AlfalfaGEDB | MsaG037062

M. sativa ssp. caerulea / MsaG037062

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037062	XP_039683887.1	90.041	241	24	0	1	241	1	241	1.15e-153	456

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037062	sp\|Q9SWG3\|FAR1_ARATH	31.343	201	129	5	48	241	51	249	1.00e-19	91.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037062	tr\|A0A2K3JN18\|A0A2K3JN18_TRIPR	55.838	197	86	1	46	241	30	226	5.60e-74	236

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037062	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000213	MsaG037062	0.821535	6.741681e-53	1.544217e-50
MsaG000243	MsaG037062	0.802316	9.980325e-49	1.422159e-46
MsaG000247	MsaG037062	0.820450	1.194706e-52	2.659203e-50
MsaG000400	MsaG037062	0.803120	6.824807e-49	9.905968e-47
MsaG000403	MsaG037062	0.814396	2.718241e-51	5.175438e-49
MsaG000455	MsaG037062	0.826284	5.252387e-54	1.369065e-51
MsaG000478	MsaG037062	0.800424	2.425707e-48	3.311323e-46
MsaG000491	MsaG037062	0.803322	6.202554e-49	9.044675e-47
MsaG000493	MsaG037062	0.810523	1.891166e-50	3.271043e-48
MsaG000663	MsaG037062	0.805998	1.724501e-49	2.675966e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037062	MtrunA17_Chr5g0441581	52.792	197	84	2	46	241	30	218	1.78e-63	209
MsaG037062	MtrunA17_Chr6g0451441	42.473	186	104	2	45	229	84	267	5.41e-47	162
MsaG037062	MtrunA17_Chr2g0296781	39.791	191	113	2	52	241	1	190	1.24e-39	145
MsaG037062	MtrunA17_Chr1g0196541	35.417	192	120	3	52	241	1	190	9.93e-25	102
MsaG037062	MtrunA17_Chr7g0258861	28.713	202	137	5	46	241	8	208	5.39e-20	86.7
MsaG037062	MtrunA17_Chr2g0324011	29.353	201	136	3	46	241	8	207	8.84e-20	87.8
MsaG037062	MtrunA17_Chr1g0207551	28.500	200	137	3	46	241	32	229	1.28e-18	84.7
MsaG037062	MtrunA17_Chr1g0202341	27.363	201	136	6	48	241	51	248	4.27e-18	83.2
MsaG037062	MtrunA17_Chr6g0477261	47.436	78	41	0	164	241	2	79	2.94e-17	80.5
MsaG037062	MtrunA17_Chr2g0290391	28.251	223	130	7	43	241	46	262	5.58e-16	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037062	AT4G15090.1	31.343	201	129	5	48	241	51	249	1.02e-20	91.3
MsaG037062	AT4G15090.5	31.343	201	129	5	48	241	51	249	1.02e-20	91.3
MsaG037062	AT4G15090.3	31.343	201	129	5	48	241	51	249	1.02e-20	91.3
MsaG037062	AT4G15090.2	31.343	201	129	5	48	241	51	249	1.02e-20	91.3
MsaG037062	AT4G15090.4	31.343	201	129	5	48	241	51	249	1.02e-20	91.3
MsaG037062	AT4G38180.1	25.103	243	162	7	8	239	38	271	3.50e-15	75.1
MsaG037062	AT1G76320.2	26.289	194	131	5	52	241	1	186	2.45e-13	69.3
MsaG037062	AT1G76320.1	26.289	194	131	5	52	241	1	186	2.57e-13	69.3
MsaG037062	AT1G76320.4	26.289	194	131	5	52	241	1	186	2.57e-13	69.3
MsaG037062	AT1G76320.3	26.289	194	131	5	52	241	1	186	3.37e-13	68.9

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Find 55 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGAAACTCTAAGAA+AGG	0.460549	7:+51064985	MsaT037062.1:CDS
AAACGATCAGGCAGGTGTAC+GGG	0.512319	7:+51065266	MsaT037062.1:CDS
AAACTAGAAACTCTAAGAAA+GGG	0.523644	7:+51064986	MsaT037062.1:CDS
AAAGGATGATCGATCAATAT+AGG	0.415391	7:-51064775	None:intergenic
AACTCTAAGAAAGGGTCCGA+TGG	0.598447	7:+51064994	MsaT037062.1:CDS
ACCACCGGCATCACATACCA+TGG	0.613048	7:-51065307	None:intergenic
ACTAACTCACGGTTGTTTGC+TGG	0.361959	7:+51065201	MsaT037062.1:CDS
AGAAAGACACCTTCTCGGGA+AGG	0.609091	7:+51065380	MsaT037062.1:CDS
AGACACCTTCTCGGGAAGGA+AGG	0.553011	7:+51065384	MsaT037062.1:CDS
AGATAAGTCCAACTAACTCA+CGG	0.662773	7:+51065190	MsaT037062.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	51064760	51065488	51064760	ID=MsaG037062
Chr7	mRNA	51064760	51065488	51064760	ID=MsaT037062.1;Parent=MsaG037062
Chr7	exon	51064760	51065488	51064760	ID=MsaT037062.1.exon1;Parent=MsaT037062.1
Chr7	CDS	51064760	51065488	51064760	ID=cds.MsaT037062.1;Parent=MsaT037062.1

Gene Sequence

>MsaT037062.1

ATGGCTGATGGTCCTCCTATATTGATCGATCATCCTTTATTACCCCCTGACGGAGAGCTAGCTGATGGTGCTGCTCGTGTTGACGTTTCGGATTCCGGGACCTTTGAAACAACAAATGCTGTCGCAACAGATAAATTCACGCCTACTATCGGTATGTCTTTTAAATCGGTTGCAGATTGTAAGTCTTTTTACCGAGAATATGCCATGAAACAAGGGTTTGCGATCAAAACTAGAAACTCTAAGAAAGGGTCCGATGGCATGTTAAAATATTTCATTCTAACTTGTGCAAGAGAAGGTCACCATGAATCAAACATACCACCAACTTTGAAGACGAATCCAACGAAGAAACTTGATTGCTCAGCTAAGATAACGGTTGCTTTAAAGAAGGGTCTATGGACTATTTTGTCTTTTAATTCATGTCATAATCATGAGATAAGTCCAACTAACTCACGGTTGTTTGCTGGCAATAAGAAGATTGATATGCATGCACAGCGGACAATTTTGATAAACGATCAGGCAGGTGTACGGGTGAACAAAAGTTTCCGTTCCATGGTATGTGATGCCGGTGGTTACGAAAATCTAACATTTGTGGAGAGAGATGTCAGAAACTTTGTGGCAAAAGAAAGACACCTTCTCGGGAAGGAAGGAGATGGCAGGGCACTTTTATCCTACTTTGCTAGAATGAGGGAATGCAACAAAGACTTTTTCTATGAGATTGACATGTTCTAA

Protein sequence

>MsaT037062.1

MADGPPILIDHPLLPPDGELADGAARVDVSDSGTFETTNAVATDKFTPTIGMSFKSVADCKSFYREYAMKQGFAIKTRNSKKGSDGMLKYFILTCAREGHHESNIPPTLKTNPTKKLDCSAKITVALKKGLWTILSFNSCHNHEISPTNSRLFAGNKKIDMHAQRTILINDQAGVRVNKSFRSMVCDAGGYENLTFVERDVRNFVAKERHLLGKEGDGRALLSYFARMRECNKDFFYEIDMF*