AlfalfaGEDB | MsaG037087

M. sativa ssp. caerulea / MsaG037087

KEGG: K09422 K16599
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037087	KEH22465.1	79.600	250	51	0	1	250	70	319	8.13e-142	411

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037087	sp\|Q9S7L2\|MYB98_ARATH	52.597	154	71	1	81	234	210	361	1.79e-49	171

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037087	tr\|A0A072U9H1\|A0A072U9H1_MEDTR	79.600	250	51	0	1	250	70	319	3.88e-142	411

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037087	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000003	MsaG037087	0.822622	3.785205e-53	8.926136e-51
MsaG000006	MsaG037087	0.823410	2.484468e-53	5.984890e-51
MsaG000045	MsaG037087	0.805381	2.320640e-49	3.549434e-47
MsaG000179	MsaG037087	0.868918	9.249922e-66	1.024539e-62
MsaG000180	MsaG037087	0.817648	5.148106e-52	1.064776e-49
MsaG000207	MsaG037087	0.825791	6.872166e-54	1.766884e-51
MsaG000222	MsaG037087	0.806461	1.378705e-49	2.163167e-47
MsaG000250	MsaG037087	0.800086	2.840564e-48	3.848003e-46
MsaG000321	MsaG037087	0.832266	1.884905e-55	5.824190e-53
MsaG000352	MsaG037087	0.820415	1.217049e-52	2.706361e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037087	MtrunA17_Chr7g0233061	76.400	250	57	1	1	250	93	340	2.33e-134	382
MsaG037087	MtrunA17_Chr7g0228481	45.126	277	119	9	1	250	120	390	3.26e-64	206
MsaG037087	MtrunA17_Chr7g0228531	44.928	276	121	9	1	250	120	390	2.39e-63	204
MsaG037087	MtrunA17_Chr7g0228401	36.334	311	133	6	3	250	156	464	2.21e-50	172
MsaG037087	MtrunA17_Chr3g0117511	56.944	144	60	1	78	221	173	314	1.07e-48	166
MsaG037087	MtrunA17_Chr4g0058991	56.934	137	57	2	82	218	203	337	1.15e-45	158
MsaG037087	MtrunA17_Chr1g0177901	56.000	125	54	1	97	221	3	126	1.66e-43	146
MsaG037087	MtrunA17_Chr5g0429661	50.746	134	61	1	87	215	121	254	1.70e-42	147
MsaG037087	MtrunA17_Chr7g0238631	53.774	106	46	1	87	192	112	214	9.38e-32	122
MsaG037087	MtrunA17_Chr3g0139671	43.357	143	64	1	87	229	84	209	1.12e-31	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037087	AT4G18770.1	52.597	154	71	1	81	234	210	361	1.82e-50	171
MsaG037087	AT3G27785.1	52.410	166	73	3	58	218	157	321	6.80e-48	164
MsaG037087	AT5G40360.1	46.774	186	90	2	30	215	109	285	8.16e-48	162
MsaG037087	AT5G58850.1	50.725	138	57	1	87	213	104	241	4.43e-42	149
MsaG037087	AT5G11050.1	51.429	140	55	2	87	213	104	243	1.09e-41	147
MsaG037087	AT2G25230.1	46.309	149	76	2	68	215	6	151	5.03e-38	133
MsaG037087	AT5G40430.1	46.763	139	71	2	82	220	48	183	6.44e-37	131
MsaG037087	AT5G02320.3	53.774	106	46	1	87	192	66	168	3.14e-32	123
MsaG037087	AT5G02320.1	53.774	106	46	1	87	192	126	228	3.73e-32	123
MsaG037087	AT5G02320.2	53.774	106	46	1	87	192	126	228	3.73e-32	123

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Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAATGATGGGTAAT+GGG	0.426031	7:-51378190	MsaT037087.1:CDS
AAAATCCTTTGTCAGTGTTT+AGG	0.328248	7:+51379706	None:intergenic
AAAGACTGGGAAACAGTGTT+GGG	0.552335	7:-51379149	MsaT037087.1:CDS
AAAGTTACTCATACAATCAA+AGG	0.548539	7:-51379483	MsaT037087.1:CDS
AACAAAATGGAAGCCGTGCA+TGG	0.535185	7:-51379732	None:intergenic
AACATCATTTCTTGGATTTG+AGG	0.356591	7:+51379636	None:intergenic
AATGATGGGTAATGGGAATG+AGG	0.605215	7:-51378183	MsaT037087.1:CDS
AATTCTTGGATGGAAAGACT+GGG	0.644480	7:-51379162	MsaT037087.1:CDS
AATTGCTTCAAAACTATATT+AGG	0.144743	7:-51378238	MsaT037087.1:CDS
ACCATCTTCAACCAAATATT+AGG	0.197577	7:-51379114	MsaT037087.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	51378118	51379748	51378118	ID=MsaG037087
Chr7	mRNA	51378118	51379748	51378118	ID=MsaT037087.1;Parent=MsaG037087
Chr7	exon	51378118	51378453	51378118	ID=MsaT037087.1.exon3;Parent=MsaT037087.1
Chr7	CDS	51378118	51378453	51378118	ID=cds.MsaT037087.1;Parent=MsaT037087.1
Chr7	exon	51379114	51379240	51379114	ID=MsaT037087.1.exon2;Parent=MsaT037087.1
Chr7	CDS	51379114	51379240	51379114	ID=cds.MsaT037087.1;Parent=MsaT037087.1
Chr7	exon	51379459	51379748	51379459	ID=MsaT037087.1.exon1;Parent=MsaT037087.1
Chr7	CDS	51379459	51379748	51379459	ID=cds.MsaT037087.1;Parent=MsaT037087.1

Gene Sequence

>MsaT037087.1

ATGGAAGCCGTGCATGGCTACCTAAACACTGACAAAGGATTTTGGAATTTCTACCAAAACAATTCCCTTCAATCTAGTAAACCTTCAGAACCTCAAATCCAAGAAATGATGTTTAAGCTCCAAGAACATCTTTATTTCATTGATAGAACTGAAAACAACCCCCTGTATGCTAATCAAAGACTCGTTCTTGTTGACAAGAACCAACAAAAGAGTGATCAAGTAAAGAATAATGAAATTTTGACCAAAGTTACTCATACAATCAAAGGCAAATGGACTGCAGATGAGGACATCATTCTTGTCCAGTTCGTGAGTTTGTTAGGGCTTAAACAATGGTCATATATTGCTGAATTCTTGGATGGAAAGACTGGGAAACAGTGTTGGGAGAGATGGACTAACCATCTTCAACCAAATATTAGGAAGGGGCCATGGAACGAAGAGGAGGATGCAATTCTAATTGATGCTCATAAAGAAGTTGGGAACAAGTGGGTAGAAATTTCAAAGAGATTGCCAGGACGTACTGAGAATTCCATCAAGAATCATTGGAATGCTACTAAGAGGAGTCTGAAGTCCAAGATGAAAGAAAAGAGGAGCAACACTAGTCCAAGAAGAAAATTGCTTCAAAACTATATTAGGGAAGTCACAATTGCTCAAGATTGTGAAAAGAAAATGATGGGTAATGGGAATGAGGATGACAACAATGACTTCAACTATGAAGATTGGGCAACTCAAGAGGATGATGTTGGTGGCTATTGA

Protein sequence

>MsaT037087.1

MEAVHGYLNTDKGFWNFYQNNSLQSSKPSEPQIQEMMFKLQEHLYFIDRTENNPLYANQRLVLVDKNQQKSDQVKNNEILTKVTHTIKGKWTADEDIILVQFVSLLGLKQWSYIAEFLDGKTGKQCWERWTNHLQPNIRKGPWNEEEDAILIDAHKEVGNKWVEISKRLPGRTENSIKNHWNATKRSLKSKMKEKRSNTSPRRKLLQNYIREVTIAQDCEKKMMGNGNEDDNNDFNYEDWATQEDDVGGY*