AlfalfaGEDB | MsaG037097

M. sativa ssp. caerulea / MsaG037097

KEGG: K09420 K09422
GO: GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037097	XP_039684150.1	87.843	255	30	1	4	258	72	325	9.61e-159	457

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037097	sp\|Q9S7L2\|MYB98_ARATH	71.311	122	35	0	123	244	216	337	8.76e-59	195

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037097	tr\|A0A072TYA6\|A0A072TYA6_MEDTR	87.843	255	30	1	4	258	72	325	4.59e-159	457

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037097	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037097	MtrunA17_Chr7g0228531	70.980	255	71	3	4	258	102	353	1.04e-123	358
MsaG037097	MtrunA17_Chr7g0228481	69.804	255	74	3	4	258	102	353	8.14e-121	351
MsaG037097	MtrunA17_Chr7g0233161	85.465	172	24	1	4	175	180	350	2.75e-102	301
MsaG037097	MtrunA17_Chr7g0228401	48.039	306	96	3	14	256	107	412	3.45e-84	260
MsaG037097	MtrunA17_Chr4g0046181	71.176	170	49	0	11	180	108	277	3.36e-70	218
MsaG037097	MtrunA17_Chr7g0233061	49.200	250	107	5	12	258	82	314	2.20e-64	204
MsaG037097	MtrunA17_Chr3g0117511	74.194	124	32	0	121	244	180	303	8.87e-60	195
MsaG037097	MtrunA17_Chr4g0058991	68.033	122	39	0	123	244	208	329	3.86e-57	189
MsaG037097	MtrunA17_Chr1g0177901	68.000	125	39	1	134	257	4	128	1.53e-54	175
MsaG037097	MtrunA17_Chr5g0429661	62.698	126	45	1	123	246	121	246	2.07e-53	176

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037097	AT4G18770.1	71.311	122	35	0	123	244	216	337	8.90e-60	195
MsaG037097	AT3G27785.1	54.545	176	71	4	81	248	143	317	2.23e-53	179
MsaG037097	AT5G58850.1	48.634	183	87	1	52	234	40	215	6.03e-52	175
MsaG037097	AT5G40360.1	54.248	153	67	2	99	248	132	284	8.07e-50	167
MsaG037097	AT5G11050.1	65.546	119	39	1	115	231	94	212	2.21e-49	168
MsaG037097	AT2G25230.1	46.575	146	76	1	103	248	7	150	2.67e-39	137
MsaG037097	AT5G11510.3	52.830	106	50	0	119	224	76	181	1.95e-38	143
MsaG037097	AT5G11510.1	52.830	106	50	0	119	224	76	181	1.95e-38	143
MsaG037097	AT5G11510.4	52.830	106	50	0	119	224	76	181	1.95e-38	143
MsaG037097	AT5G11510.2	52.830	106	50	0	119	224	76	181	1.98e-38	142

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Find 69 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCCAAGAGGAAGAAC+CGG	0.423904	7:-51628751	MsaT037097.1:CDS
AAATCCCGAGAATATGATCA+AGG	0.552306	7:-51631406	MsaT037097.1:CDS
AAATGCCAAGAGGAAGAACC+GGG	0.554441	7:-51628750	MsaT037097.1:CDS
AAATTCCTTTGCTAGTGTTA+AGG	0.422850	7:+51631587	None:intergenic
AAATTCTCTCTGATACCCAT+TGG	0.560239	7:+51631676	None:intergenic
AACCGGGGTAAGAGTTCAAA+GGG	0.562064	7:-51628734	MsaT037097.1:CDS
AAGAATGAGACCTTAATGTC+TGG	0.513472	7:+51631012	None:intergenic
AAGGATCCTAATCAAATCAA+GGG	0.616665	7:-51631322	MsaT037097.1:CDS
AAGTTTATGAAAGGAAGAAT+TGG	0.434545	7:-51631072	MsaT037097.1:CDS
AATAAGATGGAAGACATACA+TGG	0.632344	7:-51631613	MsaT037097.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	51628667	51631695	51628667	ID=MsaG037097
Chr7	mRNA	51628667	51631695	51628667	ID=MsaT037097.1;Parent=MsaG037097
Chr7	exon	51628667	51628918	51628667	ID=MsaT037097.1.exon3;Parent=MsaT037097.1
Chr7	CDS	51628667	51628918	51628667	ID=cds.MsaT037097.1;Parent=MsaT037097.1
Chr7	exon	51631023	51631149	51631023	ID=MsaT037097.1.exon2;Parent=MsaT037097.1
Chr7	CDS	51631023	51631149	51631023	ID=cds.MsaT037097.1;Parent=MsaT037097.1
Chr7	exon	51631298	51631695	51631298	ID=MsaT037097.1.exon1;Parent=MsaT037097.1
Chr7	CDS	51631298	51631695	51631298	ID=cds.MsaT037097.1;Parent=MsaT037097.1

Gene Sequence

>MsaT037097.1

ATGGGTATCAGAGAGAATTTATCGGTCTTTCGAAATTCAATGATCTTTGCACCAAACCATAATAAGATGGAAGACATACATGGTCGCCTTAACACTAGCAAAGGAATTTTGGATTTGTCTACAAAAAATCTCTTTCAATATGGTGAAACTTCACAACCTCGGGTAAGTCCCTCTCTATCACCATCACTAGCTTATGATGCACATAAATATGTGTCAATTAATCCTGAGCTTCAAGGACATCTATCATGCAATGATGGAATTGGAAACAAATCCCGAGAATATGATCAAGGATTCGTGCTCAGTGCCCAAAAGCGGCTGAAGAGGATTCAAAAGAATAATAAAATTCAACACAAGGATCCTAATCAAATCAAGGGACAATGGACATCAAATGAGGATCGGGTTCTTGTCCAATTGGTGGATCACTTTGGGCTAAGAAAATGGTCGCGTATTGCTAAGTTTATGAAAGGAAGAATTGGAAAACAGTGCAGAGAGAGATGGAACAACCATCTTCGACCAGACATTAAGAAGGATTCATGGTCTGAAGAGGAGGACAAAATACTAATCGAAGCTCACAAAATAGTTGGAAACAAGTGGACTGAAATTTCAAGAAGATTGCCCGGACGCACCAAGAACTCCATCAAGAACCACTGGAACGCCACTAAGCGCCGCCAAAATGCCAAGAGGAAGAACCGGGGTAAGAGTTCAAAGGGAAGACTACTTATGAAATACATAATGGAAGTCACCAATGCTAAGGAAGTTGAAAAGGAGCCGATGTAG

Protein sequence

>MsaT037097.1

MGIRENLSVFRNSMIFAPNHNKMEDIHGRLNTSKGILDLSTKNLFQYGETSQPRVSPSLSPSLAYDAHKYVSINPELQGHLSCNDGIGNKSREYDQGFVLSAQKRLKRIQKNNKIQHKDPNQIKGQWTSNEDRVLVQLVDHFGLRKWSRIAKFMKGRIGKQCRERWNNHLRPDIKKDSWSEEEDKILIEAHKIVGNKWTEISRRLPGRTKNSIKNHWNATKRRQNAKRKNRGKSSKGRLLMKYIMEVTNAKEVEKEPM*