AlfalfaGEDB | MsaG037100

M. sativa ssp. caerulea / MsaG037100

KEGG: K09420 K09422
GO: GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037100	XP_039684150.1	85.830	247	35	0	195	441	166	412	3.58e-151	446

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037100	sp\|Q9S7L2\|MYB98_ARATH	68.852	122	38	0	219	340	216	337	7.22e-54	188

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037100	tr\|A0A072TYA6\|A0A072TYA6_MEDTR	85.830	247	35	0	195	441	166	412	1.71e-151	446

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037100	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037100	MtrunA17_Chr7g0228531	72.269	238	57	2	204	441	204	432	3.75e-119	354
MsaG037100	MtrunA17_Chr7g0228481	70.445	247	64	2	195	441	195	432	1.37e-118	353
MsaG037100	MtrunA17_Chr7g0233151	85.465	172	25	0	270	441	1	172	2.10e-104	307
MsaG037100	MtrunA17_Chr7g0228401	53.333	255	78	5	210	425	245	497	2.09e-77	249
MsaG037100	MtrunA17_Chr1g0177901	54.502	211	75	5	230	425	4	208	2.28e-65	208
MsaG037100	MtrunA17_Chr4g0046171	71.631	141	40	0	301	441	1	141	1.32e-58	188
MsaG037100	MtrunA17_Chr4g0022361	60.116	173	66	2	1	173	83	252	1.84e-56	189
MsaG037100	MtrunA17_Chr3g0117511	70.079	127	38	0	214	340	177	303	2.44e-55	190
MsaG037100	MtrunA17_Chr4g0058991	43.874	253	99	7	219	437	208	451	6.72e-55	189
MsaG037100	MtrunA17_Chr7g0233061	51.905	210	80	8	208	415	168	358	3.19e-52	179

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037100	AT4G18770.1	68.852	122	38	0	219	340	216	337	7.34e-55	188
MsaG037100	AT3G27785.1	63.846	130	41	2	219	343	188	316	6.15e-50	176
MsaG037100	AT5G58850.1	48.370	184	92	2	147	330	35	215	2.23e-48	171
MsaG037100	AT5G11050.1	65.000	120	40	1	210	327	93	212	5.95e-48	170
MsaG037100	AT5G40360.1	63.393	112	41	0	220	331	158	269	3.01e-47	166
MsaG037100	AT5G11510.3	55.046	109	48	1	215	322	76	184	3.33e-38	148
MsaG037100	AT5G11510.1	55.046	109	48	1	215	322	76	184	3.33e-38	148
MsaG037100	AT5G11510.4	55.046	109	48	1	215	322	76	184	3.33e-38	148
MsaG037100	AT5G11510.5	55.046	109	48	1	215	322	76	184	3.74e-38	147
MsaG037100	AT5G11510.2	55.046	109	48	1	215	322	76	184	4.09e-38	147

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Find 105 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGATGGTTCTGAAGTT+TGG	0.236677	7:+51714595	None:intergenic
AAATTTCAAGAAGATTGCCA+GGG	0.649002	7:-51696179	MsaT037100.1:CDS
AACACTAAGGTGTGGAACTA+AGG	0.403347	7:-51712306	MsaT037100.1:CDS
AACAGATGGTTCTGAAGTTT+GGG	0.326560	7:+51714596	None:intergenic
AACATCATCCATGTCTGAAG+AGG	0.610339	7:+51714923	None:intergenic
AACCCACAAATTTCGTTCTC+TGG	0.372683	7:+51695916	None:intergenic
AACCGAGGTAAGAGTTTAAA+GGG	0.400405	7:-51696090	MsaT037100.1:CDS
AAGAATGACACCTTAATGTT+TGG	0.374739	7:+51698292	None:intergenic
AAGGATCCCAATCAAATCAA+GGG	0.629321	7:-51698607	MsaT037100.1:CDS
AAGTTTCTGAAAGGCAGAAT+TGG	0.420799	7:-51698352	MsaT037100.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	51695762	51715087	51695762	ID=MsaG037100
Chr7	mRNA	51695762	51715087	51695762	ID=MsaT037100.1;Parent=MsaG037100
Chr7	exon	51695762	51696274	51695762	ID=MsaT037100.1.exon5;Parent=MsaT037100.1
Chr7	CDS	51695762	51696274	51695762	ID=cds.MsaT037100.1;Parent=MsaT037100.1
Chr7	exon	51698303	51698429	51698303	ID=MsaT037100.1.exon4;Parent=MsaT037100.1
Chr7	CDS	51698303	51698429	51698303	ID=cds.MsaT037100.1;Parent=MsaT037100.1
Chr7	exon	51698583	51698657	51698583	ID=MsaT037100.1.exon3;Parent=MsaT037100.1
Chr7	CDS	51698583	51698657	51698583	ID=cds.MsaT037100.1;Parent=MsaT037100.1
Chr7	exon	51712266	51712356	51712266	ID=MsaT037100.1.exon2;Parent=MsaT037100.1
Chr7	CDS	51712266	51712356	51712266	ID=cds.MsaT037100.1;Parent=MsaT037100.1
Chr7	exon	51714568	51715087	51714568	ID=MsaT037100.1.exon1;Parent=MsaT037100.1
Chr7	CDS	51714568	51715087	51714568	ID=cds.MsaT037100.1;Parent=MsaT037100.1

Gene Sequence

>MsaT037100.1

GAGGAGAGAGCTGCTTGTCCAGAAGCTGATGCTTCAGTAGTTAATCAAGGTAATACTGATCCTCATCACATCTCTAATATAGTAGAAATCGATTCTAGTACAACCTTAGTCTCCCATTCAACCTCGGTGTCAAACTCCTCAACCTCTTCAGACATGGATGATGTTCCCTTGAACAAAATTTATGCAAATCTACATAAATCCTTATCCCCATCATCATCTACCAAGCACAAGAAAAAGCCCAATGATGATAGTTTTGAGCCAATGTATCCTAGTGTTCAAGAAAGAATACATGTAATGGCTCAAATCAGATTCAATGTTTGTGCAAGACTACCTGTTGACCATCCTCTTCAACCTTCAATGATTGAACCTATTAGCTTTGTTCCTGCTAATGCAGAGGTTATAAGTAAACAAGTAGGTTCTAGGTCTGCAAACTTTAATGAGTCGTCATCATCTCATCCCACTTCAATCACCCAAACTTCAGAACCATCTGTTTTTGAGAATTTGGTCAGTCACTACTCAGAATTTAAAACAAACAACAAACAAAAGATAACACTAAGGTGTGGAACTAAGGGTTGGTTTGTTGTTGTTTCTTCATCTTCTCCATTTCTTCAGATTCAAAATAATAATGAAATTCAACACAAGGATCCCAATCAAATCAAGGGACAATGGACTTCAAATGAGGATCGGGTTCTTGTCCAATTGGTGGATCAATTTGGGCTTAGAAAATGGTCCCGTATTGCTAAGTTTCTGAAAGGCAGAATTGGAAAACAATGCAGAGATAGATGGAATAACCATCTTCGACCAAACATTAAGAAGGATTCGTGGACCGAAGAGGAGGAAAAAAGATTAATCGAAGCTCACAAAATAGTTGGAAACAAATGGACTGAAATTTCAAGAAGATTGCCAGGGCGCACTGAGAACTCCATCAAGAACCACTGGAACGCCACTAAGCGCCGCCTAAATGCCAAGAGGAAGAACCGAGGTAAGAGTTTAAAGGGGATACTACTTCTAAAATACATAATGGAAGTCATCAATGCTAAGGAAGTTGAAAAGGAGCCGATGACGTATTCTATGAGCATGATGGACATTAGAAATCAACCAAATTTTGAAAGCTCAGAGAATGATTTTAGAACTGAAGGTTTGGCTATTCCAGAGAACGAAATTTGTGGGTTTGTTCCAATGACATTCAATGGTAATGATGGAATGGCAAGTGGATCTGGTACCATGATGAATTATGAGTTTGGATCATATGGAATGGAGTTTTTTCCTGAGGTTCCTCTTAAGCAAGAAATTGATCTCATGGAGATGATCTATAAAAACCCTTAA

Protein sequence

>MsaT037100.1

EERAACPEADASVVNQGNTDPHHISNIVEIDSSTTLVSHSTSVSNSSTSSDMDDVPLNKIYANLHKSLSPSSSTKHKKKPNDDSFEPMYPSVQERIHVMAQIRFNVCARLPVDHPLQPSMIEPISFVPANAEVISKQVGSRSANFNESSSSHPTSITQTSEPSVFENLVSHYSEFKTNNKQKITLRCGTKGWFVVVSSSSPFLQIQNNNEIQHKDPNQIKGQWTSNEDRVLVQLVDQFGLRKWSRIAKFLKGRIGKQCRDRWNNHLRPNIKKDSWTEEEEKRLIEAHKIVGNKWTEISRRLPGRTENSIKNHWNATKRRLNAKRKNRGKSLKGILLLKYIMEVINAKEVEKEPMTYSMSMMDIRNQPNFESSENDFRTEGLAIPENEICGFVPMTFNGNDGMASGSGTMMNYEFGSYGMEFFPEVPLKQEIDLMEMIYKNP*