AlfalfaGEDB | MsaG037117

M. sativa ssp. caerulea / MsaG037117

KEGG: K11294
GO: -
PFAM: PF00583.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037117	RHN67051.1	81.935	155	27	1	1	154	1	155	1.07e-85	258

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037117	tr\|A0A396IQQ6\|A0A396IQQ6_MEDTR	81.935	155	27	1	1	154	1	155	5.12e-86	258

TFs/TRs:

Gene ID	Type	Classification
MsaG037117	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG037117	0.805464	2.229286e-49	3.416320e-47
MsaG000400	MsaG037117	0.805043	2.728217e-49	4.140457e-47
MsaG000643	MsaG037117	0.803119	6.827444e-49	9.909616e-47
MsaG001636	MsaG037117	0.801255	1.644555e-48	2.287389e-46
MsaG002414	MsaG037117	0.801341	1.579074e-48	2.200691e-46
MsaG002681	MsaG037117	0.829694	8.007196e-55	2.297119e-52
MsaG002878	MsaG037117	0.802045	1.134031e-48	1.605906e-46
MsaG003436	MsaG037117	0.801320	1.594778e-48	2.221501e-46
MsaG003684	MsaG037117	0.820404	1.224133e-52	2.721309e-50
MsaG003810	MsaG037117	0.814090	3.173717e-51	5.996288e-49
MsaG003972	MsaG037117	0.808131	6.128011e-50	1.000393e-47
MsaG004428	MsaG037117	0.804439	3.642511e-49	5.450887e-47
MsaG004432	MsaG037117	0.802741	8.165991e-49	1.174935e-46
MsaG004447	MsaG037117	0.805578	2.110494e-49	3.242853e-47
MsaG004841	MsaG037117	0.843399	2.678322e-58	1.164848e-55
MsaG005138	MsaG037117	0.812287	7.860333e-51	1.419616e-48
MsaG006013	MsaG037117	0.801112	1.758433e-48	2.437901e-46
MsaG006256	MsaG037117	0.810781	1.663835e-50	2.896022e-48
MsaG006373	MsaG037117	0.800993	1.859035e-48	2.570482e-46
MsaG006411	MsaG037117	0.801054	1.807022e-48	2.501912e-46
MsaG006517	MsaG037117	0.807350	8.962903e-50	1.436031e-47
MsaG006669	MsaG037117	0.802808	7.911112e-49	1.140021e-46
MsaG006679	MsaG037117	0.810050	2.389185e-50	4.084991e-48
MsaG006710	MsaG037117	0.819638	1.829817e-52	3.985790e-50
MsaG006788	MsaG037117	0.801997	1.160404e-48	1.641411e-46
MsaG006841	MsaG037117	0.811837	9.840071e-51	1.757651e-48
MsaG007658	MsaG037117	0.802467	9.293692e-49	1.328871e-46
MsaG009532	MsaG037117	0.810002	2.445862e-50	4.177091e-48
MsaG009916	MsaG037117	0.805113	2.638922e-49	4.011256e-47
MsaG009926	MsaG037117	0.802780	8.016449e-49	1.154449e-46
MsaG010274	MsaG037117	0.809148	3.724624e-50	6.231240e-48
MsaG010328	MsaG037117	0.807819	7.136049e-50	1.156258e-47
MsaG010372	MsaG037117	0.804421	3.674350e-49	5.496234e-47
MsaG010594	MsaG037117	0.805288	2.426265e-49	3.702982e-47
MsaG011508	MsaG037117	0.805017	2.762660e-49	4.190162e-47
MsaG011764	MsaG037117	0.811875	9.656499e-51	1.726471e-48
MsaG011983	MsaG037117	0.800754	2.078797e-48	2.858990e-46
MsaG012188	MsaG037117	0.800678	2.154664e-48	2.958263e-46
MsaG012291	MsaG037117	0.803833	4.863259e-49	7.176112e-47
MsaG012445	MsaG037117	0.803209	6.542446e-49	9.515692e-47
MsaG012754	MsaG037117	0.823584	2.262367e-53	5.475943e-51
MsaG013443	MsaG037117	0.806824	1.157150e-49	1.831014e-47
MsaG013961	MsaG037117	0.823595	2.249465e-53	5.446368e-51
MsaG014469	MsaG037117	0.826273	5.283298e-54	1.376693e-51
MsaG015258	MsaG037117	0.828422	1.623553e-54	4.492794e-52
MsaG015441	MsaG037117	0.809791	2.714369e-50	4.612142e-48
MsaG015782	MsaG037117	0.821010	8.895891e-53	2.009628e-50
MsaG016250	MsaG037117	0.834735	4.594704e-56	1.526974e-53
MsaG016377	MsaG037117	0.805911	1.797806e-49	2.784127e-47
MsaG016584	MsaG037117	0.800071	2.860147e-48	3.873315e-46
MsaG016796	MsaG037117	0.800389	2.466192e-48	3.363876e-46
MsaG017087	MsaG037117	0.807632	7.815365e-50	1.260616e-47
MsaG017192	MsaG037117	0.809791	2.714742e-50	4.612750e-48
MsaG017203	MsaG037117	0.827548	2.628130e-54	7.096593e-52
MsaG017271	MsaG037117	0.801220	1.671812e-48	2.323404e-46
MsaG017348	MsaG037117	0.834209	6.218363e-56	2.034180e-53
MsaG017459	MsaG037117	0.804752	3.137229e-49	4.728920e-47
MsaG017616	MsaG037117	0.804288	3.915978e-49	5.839811e-47
MsaG018074	MsaG037117	0.820711	1.041450e-52	2.333911e-50
MsaG018355	MsaG037117	0.803858	4.806330e-49	7.096217e-47
MsaG018511	MsaG037117	0.822923	3.223327e-53	7.663186e-51
MsaG018876	MsaG037117	0.811832	9.868863e-51	1.762541e-48
MsaG019358	MsaG037117	0.801585	1.408103e-48	1.973260e-46
MsaG019533	MsaG037117	0.806997	1.063959e-49	1.690446e-47
MsaG019783	MsaG037117	0.803740	5.084219e-49	7.486195e-47
MsaG020004	MsaG037117	0.812875	5.855425e-51	1.073136e-48
MsaG020396	MsaG037117	0.831595	2.756460e-55	8.352507e-53
MsaG020601	MsaG037117	0.811477	1.177733e-50	2.085159e-48
MsaG020627	MsaG037117	0.843116	3.183623e-58	1.372110e-55
MsaG020648	MsaG037117	0.820753	1.018868e-52	2.285867e-50
MsaG020885	MsaG037117	0.817019	7.121364e-52	1.449345e-49
MsaG021032	MsaG037117	0.800848	1.990066e-48	2.742649e-46
MsaG021053	MsaG037117	0.816512	9.241960e-52	1.856460e-49
MsaG021087	MsaG037117	0.804041	4.405464e-49	6.532387e-47
MsaG021781	MsaG037117	0.822864	3.325889e-53	7.894728e-51
MsaG021783	MsaG037117	0.834581	5.020532e-56	1.660798e-53
MsaG021836	MsaG037117	0.833804	7.843841e-56	2.535276e-53
MsaG022048	MsaG037117	0.810647	1.778120e-50	3.084838e-48
MsaG022571	MsaG037117	0.806062	1.672162e-49	2.598794e-47
MsaG022609	MsaG037117	0.815807	1.326059e-51	2.616310e-49
MsaG022654	MsaG037117	0.814703	2.326244e-51	4.463264e-49
MsaG023249	MsaG037117	0.803851	4.823111e-49	7.119754e-47
MsaG023415	MsaG037117	0.820370	1.246099e-52	2.767681e-50
MsaG023590	MsaG037117	0.806226	1.544493e-49	2.409795e-47
MsaG023664	MsaG037117	0.810974	1.512476e-50	2.644945e-48
MsaG023645	MsaG037117	0.819655	1.813394e-52	3.951787e-50
MsaG024908	MsaG037117	0.813621	4.022199e-51	7.510456e-49
MsaG025489	MsaG037117	0.802798	7.947632e-49	1.145018e-46
MsaG026021	MsaG037117	0.803982	4.530511e-49	6.708323e-47
MsaG026614	MsaG037117	0.806973	1.076432e-49	1.709287e-47
MsaG027323	MsaG037117	0.800543	2.294777e-48	3.140994e-46
MsaG027528	MsaG037117	0.807273	9.305664e-50	1.488176e-47
MsaG027829	MsaG037117	0.812249	8.010131e-51	1.445299e-48
MsaG027950	MsaG037117	0.800436	2.412766e-48	3.294471e-46
MsaG027991	MsaG037117	0.819431	2.038886e-52	4.417447e-50
MsaG028254	MsaG037117	0.803470	5.780649e-49	8.458416e-47
MsaG028308	MsaG037117	0.810936	1.541145e-50	2.692585e-48
MsaG028481	MsaG037117	0.822921	3.226165e-53	7.669682e-51
MsaG029082	MsaG037117	0.801462	1.491846e-48	2.084807e-46
MsaG029083	MsaG037117	0.806861	1.136090e-49	1.799300e-47
MsaG030265	MsaG037117	0.812797	6.087633e-51	1.113526e-48
MsaG030605	MsaG037117	0.801986	1.166109e-48	1.649111e-46
MsaG030781	MsaG037117	0.803340	6.149138e-49	8.970511e-47
MsaG031064	MsaG037117	0.810472	1.939122e-50	3.349916e-48
MsaG031267	MsaG037117	0.809933	2.530532e-50	4.314422e-48
MsaG035456	MsaG037117	0.802485	9.215214e-49	1.318195e-46
MsaG037117	MsaG038058	0.804430	3.659269e-49	5.474774e-47
MsaG037117	MsaG038991	0.803555	5.550269e-49	8.137517e-47
MsaG037117	MsaG039649	0.813671	3.921385e-51	7.331422e-49
MsaG037117	MsaG040342	0.803294	6.284630e-49	9.158511e-47
MsaG037117	MsaG040354	0.802608	8.694883e-49	1.247288e-46
MsaG037117	MsaG040499	0.829436	9.249883e-55	2.634071e-52
MsaG037117	MsaG040674	0.804055	4.376278e-49	6.491167e-47
MsaG037117	MsaG040907	0.815513	1.541023e-51	3.017781e-49
MsaG037117	MsaG040923	0.803483	5.744600e-49	8.408247e-47
MsaG037117	MsaG041066	0.809016	3.973250e-50	6.626203e-48
MsaG037117	MsaG041128	0.800478	2.365584e-48	3.233137e-46
MsaG037117	MsaG041135	0.807640	7.783261e-50	1.255686e-47
MsaG037117	MsaG041534	0.818604	3.137523e-52	6.651803e-50
MsaG037117	MsaG041776	0.819811	1.670838e-52	3.656314e-50
MsaG037117	MsaG041894	0.807156	9.847828e-50	1.570542e-47
MsaG037117	MsaG042050	0.800219	2.669816e-48	3.627537e-46
MsaG037117	MsaG042799	0.822610	3.809377e-53	8.980245e-51
MsaG037117	MsaG043354	0.807615	7.878598e-50	1.270317e-47
MsaG037117	MsaG043499	0.803986	4.521700e-49	6.695876e-47
MsaG037117	MsaG043787	0.801281	1.624533e-48	2.260879e-46
MsaG037117	MsaG043815	0.820253	1.325638e-52	2.935308e-50
MsaG037117	MsaG043850	0.809452	3.208379e-50	5.407155e-48
MsaG037117	MsaG043880	0.800262	2.616251e-48	3.558272e-46
MsaG037117	MsaG044434	0.830973	3.912028e-55	1.164166e-52
MsaG037117	MsaG044627	0.809372	3.336707e-50	5.612288e-48
MsaG037117	MsaG044946	0.805607	2.081663e-49	3.200772e-47
MsaG037117	MsaG045037	0.805360	2.344130e-49	3.583684e-47
MsaG037117	MsaG045061	0.805304	2.408143e-49	3.676688e-47
MsaG037117	MsaG045314	0.826133	5.703495e-54	1.480490e-51
MsaG037117	MsaG045492	0.809284	3.483937e-50	5.847366e-48
MsaG037117	MsaG045672	0.823087	2.952460e-53	7.050580e-51
MsaG037117	MsaG046153	0.805145	2.597975e-49	3.952073e-47
MsaG037117	MsaG046281	0.808197	5.934430e-50	9.703338e-48
MsaG037117	MsaG046329	0.807767	7.316993e-50	1.184099e-47
MsaG037117	MsaG046662	0.815987	1.209384e-51	2.397041e-49
MsaG037117	MsaG046700	0.809274	3.501807e-50	5.875901e-48
MsaG037117	MsaG046944	0.805090	2.667807e-49	4.053053e-47
MsaG037117	MsaG004542	0.816927	7.465697e-52	1.515824e-49
MsaG037117	MsaG012254	0.833794	7.888519e-56	2.548971e-53
MsaG037117	MsaG011916	0.822893	3.274234e-53	7.777963e-51
MsaG037117	MsaG018328	0.821052	8.702740e-53	1.968121e-50
MsaG037117	MsaG018508	0.806291	1.497070e-49	2.339424e-47
MsaG037117	MsaG018051	0.800655	2.177476e-48	2.988048e-46
MsaG037117	MsaG020214	0.823043	3.023188e-53	7.210812e-51
MsaG037117	MsaG026612	0.811223	1.336572e-50	2.351659e-48
MsaG037117	MsaG027478	0.802011	1.152816e-48	1.631186e-46
MsaG037117	MsaG025429	0.803524	5.634211e-49	8.254474e-47
MsaG037117	MsaG033142	0.806405	1.416630e-49	2.219698e-47
MsaG037117	MsaG032944	0.802322	9.954815e-49	1.418704e-46
MsaG037117	MsaG033056	0.812237	8.059814e-51	1.453824e-48
MsaG037117	MsaG033379	0.801563	1.423253e-48	1.993452e-46
MsaG037117	MsaG034192	0.803700	5.180615e-49	7.621100e-47
MsaG037117	MsaG035348	0.806522	1.339081e-49	2.103938e-47
MsaG037117	MsaG036507	0.802488	9.204367e-49	1.316717e-46
MsaG037117	MsaG041479	0.802445	9.392480e-49	1.342322e-46
MsaG037117	MsaG041359	0.828452	1.596357e-54	4.421430e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037117	MtrunA17_Chr3g0098461	81.935	155	27	1	1	154	1	155	9.86e-90	258
MsaG037117	MtrunA17_Chr0c05g0492161	71.074	121	34	1	1	120	1	121	5.50e-56	171

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGCGTCAGTGTTGGTCTTC+GGG	0.301799	7:-52110051	None:intergenic
GGTTTCATCGTCTTTGATAT+TGG	0.310497	7:+52109760	MsaT037117.1:CDS
AACCTTGTCCAAGTCCATTT+CGG	0.354048	7:-52109878	None:intergenic
AATGCGTCAGTGTTGGTCTT+CGG	0.376239	7:-52110052	None:intergenic
ACTTGTGACCATGGCCGAAA+TGG	0.380600	7:+52109864	MsaT037117.1:CDS
CATCCACAAGAATCTTAAAT+AGG	0.405177	7:-52109651	None:intergenic
AACCCTATCTTTCGGAGAAA+AGG	0.415290	7:+52109829	MsaT037117.1:CDS
GTGAAGAGCAATAATATTGA+TGG	0.429245	7:+52110109	MsaT037117.1:CDS
TGACGTGGATGCTAAAAGTT+TGG	0.430756	7:+52109684	MsaT037117.1:CDS
TCTTCGTTAACCCTATCTTT+CGG	0.431368	7:+52109821	MsaT037117.1:CDS
GTCCAAGTCCATTTCGGCCA+TGG	0.446272	7:-52109872	None:intergenic
GACCATGGCCGAAATGGACT+TGG	0.499061	7:+52109870	MsaT037117.1:CDS
GATCTGAAGCATACTGGTTA+TGG	0.504056	7:+52109784	MsaT037117.1:CDS
GGACCTATTTAAGATTCTTG+TGG	0.505182	7:+52109648	MsaT037117.1:CDS
GAGCAATAATATTGATGGGA+AGG	0.524325	7:+52110114	MsaT037117.1:CDS
ATTGGTGATCTGAAGCATAC+TGG	0.528676	7:+52109778	MsaT037117.1:CDS
GTCGCCGAGGATAAACTCCT+AGG	0.541691	7:+52109727	MsaT037117.1:CDS
GGCCGAAATGGACTTGGACA+AGG	0.545609	7:+52109876	MsaT037117.1:CDS
TGAAGAGCAATAATATTGAT+GGG	0.562579	7:+52110110	MsaT037117.1:CDS
GCATCTCTTACGACCACATG+TGG	0.566352	7:-52109616	None:intergenic
AGAATCTTAAATAGGTCCAC+AGG	0.578847	7:-52109643	None:intergenic
AAACTCCTAGGGTTTATCCT+CGG	0.580594	7:+52109739	MsaT037117.1:CDS
ATCATGACGAAGAAGCTCGA+GGG	0.582010	7:+52110151	MsaT037117.1:CDS
CGCTACTCGACTTGTGACCA+TGG	0.583316	7:+52109855	MsaT037117.1:CDS
TAAGAGTAATGCGTCAGTGT+TGG	0.594559	7:-52110059	None:intergenic
AAAGATAGGGTTAACGAAGA+GGG	0.602204	7:-52109818	None:intergenic
TCGCCGAGGATAAACTCCTA+GGG	0.604901	7:+52109728	MsaT037117.1:CDS
AAACCCTAGGAGTTTATCCT+CGG	0.607628	7:-52109731	None:intergenic
GAAAGATAGGGTTAACGAAG+AGG	0.620492	7:-52109819	None:intergenic
GTCAGTGTTGGTCTTCGGGA+CGG	0.627712	7:-52110047	None:intergenic
ATCTCTTACGACCACATGTG+GGG	0.629012	7:-52109614	None:intergenic
TGAAACCGAGGATAAACCCT+AGG	0.631949	7:-52109744	None:intergenic
CATCTCTTACGACCACATGT+GGG	0.632600	7:-52109615	None:intergenic
CGTAAGAGATGCAACACCTG+TGG	0.632733	7:+52109627	MsaT037117.1:CDS
GATGCTAAAAGTTTGGCGAA+TGG	0.635951	7:+52109691	MsaT037117.1:CDS
CATCATGACGAAGAAGCTCG+AGG	0.646448	7:+52110150	MsaT037117.1:CDS
TCATGACGAAGAAGCTCGAG+GGG	0.655307	7:+52110152	MsaT037117.1:CDS
AAAGATGGAGTCCCCACATG+TGG	0.657747	7:+52109603	None:intergenic
TATCAAAGACGATGAAACCG+AGG	0.669702	7:-52109756	None:intergenic
TAAGATTCTTCAAGTCGCCG+AGG	0.715340	7:+52109714	MsaT037117.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	52109607	52110195	52109607	ID=MsaG037117
Chr7	mRNA	52109607	52110195	52109607	ID=MsaT037117.1;Parent=MsaG037117
Chr7	exon	52109607	52109897	52109607	ID=MsaT037117.1.exon1;Parent=MsaT037117.1
Chr7	CDS	52109607	52109897	52109607	ID=cds.MsaT037117.1;Parent=MsaT037117.1
Chr7	exon	52110022	52110195	52110022	ID=MsaT037117.1.exon2;Parent=MsaT037117.1
Chr7	CDS	52110022	52110195	52110022	ID=cds.MsaT037117.1;Parent=MsaT037117.1

Gene Sequence

>MsaT037117.1

ATGGAGTCCCCACATGTGGTCGTAAGAGATGCAACACCTGTGGACCTATTTAAGATTCTTGTGGATGCTGTTTTACCTGACGTGGATGCTAAAAGTTTGGCGAATGGTAAGATTCTTCAAGTCGCCGAGGATAAACTCCTAGGGTTTATCCTCGGTTTCATCGTCTTTGATATTGGTGATCTGAAGCATACTGGTTATGGTCATATCACTTCCCTCTTCGTTAACCCTATCTTTCGGAGAAAAGGACACGCTACTCGACTTGTGACCATGGCCGAAATGGACTTGGACAAGCAAGGTGCTGCTTACGTCTCAGTGACCGTCCCGAAGACCAACACTGACGCATTACTCTTATTCAAAAAGATGAAGTATGAGGAGGCTGTGAAGAGCAATAATATTGATGGGAAGGATGATGCTAATGTCATCATGACGAAGAAGCTCGAGGGGAAGCAGATGCATTCTGCGTAG

Protein sequence

>MsaT037117.1

MESPHVVVRDATPVDLFKILVDAVLPDVDAKSLANGKILQVAEDKLLGFILGFIVFDIGDLKHTGYGHITSLFVNPIFRRKGHATRLVTMAEMDLDKQGAAYVSVTVPKTNTDALLLFKKMKYEEAVKSNNIDGKDDANVIMTKKLEGKQMHSA*