AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG037118


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG037118 MtrunA17_Chr7g0233521 82.671 277 47 1 28 304 1 276 5.11e-173 484
MsaG037118 MtrunA17_Chr7g0233521 81.538 65 12 0 303 367 138 202 7.96e-30 116
MsaG037118 MtrunA17_Chr7g0233541 69.932 296 71 5 28 306 1 295 2.27e-148 422
MsaG037118 MtrunA17_Chr7g0233541 90.909 66 6 0 303 368 153 218 4.03e-33 126
MsaG037118 MtrunA17_Chr7g0233561 65.015 323 95 4 1 306 6 327 1.04e-141 407
MsaG037118 MtrunA17_Chr7g0233561 72.059 68 18 1 303 369 183 250 1.17e-21 95.1
MsaG037118 MtrunA17_Chr3g0131891 65.109 321 88 5 1 306 7 318 1.11e-141 407
MsaG037118 MtrunA17_Chr3g0131891 33.937 221 83 5 204 368 29 242 4.83e-27 110
MsaG037118 MtrunA17_Chr7g0233531 66.781 292 66 4 28 304 1 276 1.44e-130 377
MsaG037118 MtrunA17_Chr7g0233531 41.341 179 54 5 239 368 26 202 3.01e-29 115
MsaG037118 MtrunA17_Chr7g0233571 61.111 216 66 2 5 203 2 216 2.38e-86 262
MsaG037118 MtrunA17_Chr8g0390841 35.082 305 164 6 11 291 37 331 3.58e-47 169
MsaG037118 MtrunA17_Chr1g0163071 34.564 298 150 7 28 291 1 287 4.28e-47 163
MsaG037118 MtrunA17_Chr1g0208771 34.130 293 148 7 29 291 13 290 1.28e-45 163
MsaG037118 MtrunA17_Chr3g0103181 34.564 298 151 9 10 290 9 279 3.51e-41 147
MsaG037118 MtrunA17_Chr1g0163181 30.892 314 193 7 22 318 14 320 1.63e-33 130
MsaG037118 MtrunA17_Chr1g0163221 31.023 303 177 10 5 290 3 290 6.03e-32 124
MsaG037118 MtrunA17_Chr3g0103191 52.252 111 50 2 1 111 1 108 7.55e-31 118
MsaG037118 MtrunA17_Chr3g0103151 54.902 102 44 1 10 111 9 108 8.26e-31 115
MsaG037118 MtrunA17_Chr1g0171611 30.450 289 163 7 10 289 6 265 6.02e-29 114
MsaG037118 MtrunA17_Chr5g0419201 46.465 99 53 0 13 111 16 114 9.41e-29 111
MsaG037118 MtrunA17_Chr1g0163251 30.323 310 202 8 22 326 14 314 2.03e-28 115
MsaG037118 MtrunA17_Chr1g0163231 30.405 296 166 9 10 289 6 277 2.12e-28 113
MsaG037118 MtrunA17_Chr3g0103171 29.455 275 166 8 29 290 6 265 4.60e-28 111
MsaG037118 MtrunA17_Chr1g0163261 29.773 309 173 9 10 298 6 290 1.66e-27 110
MsaG037118 MtrunA17_Chr4g0067431 29.043 303 188 10 11 290 13 311 2.83e-27 110
MsaG037118 MtrunA17_Chr5g0429931 28.727 275 147 8 29 294 11 245 4.97e-27 108
MsaG037118 MtrunA17_Chr1g0163201 29.964 277 170 6 29 291 19 285 6.90e-27 111
MsaG037118 MtrunA17_Chr3g0077451 27.076 277 144 7 27 294 10 237 2.28e-25 103
MsaG037118 MtrunA17_Chr3g0077411 27.797 295 168 9 11 294 260 520 1.50e-23 102
MsaG037118 MtrunA17_Chr3g0077411 26.148 283 139 8 12 286 24 244 2.60e-21 95.9
MsaG037118 MtrunA17_Chr1g0154041 25.978 358 197 12 8 304 11 361 1.72e-22 99.8
MsaG037118 MtrunA17_Chr1g0154161 24.749 299 206 4 11 299 28 317 2.41e-22 97.1
MsaG037118 MtrunA17_Chr1g0163131 28.889 315 169 10 6 287 11 303 4.81e-22 95.9
MsaG037118 MtrunA17_Chr1g0154131 28.772 285 177 7 11 278 182 457 4.98e-22 97.8
MsaG037118 MtrunA17_Chr1g0154171 25.449 334 183 10 11 290 21 342 5.40e-22 96.7
MsaG037118 MtrunA17_Chr6g0467351 38.406 138 70 3 11 139 13 144 8.56e-21 90.5
MsaG037118 MtrunA17_Chr3g0077461 29.779 272 134 9 12 278 236 455 1.01e-20 94.0
MsaG037118 MtrunA17_Chr3g0077461 39.535 86 52 0 29 114 23 108 1.37e-17 84.3
MsaG037118 MtrunA17_Chr1g0163101 36.806 144 79 3 6 149 10 141 1.28e-19 85.9
MsaG037118 MtrunA17_Chr4g0033961 40.000 105 61 1 13 115 6 110 1.74e-19 90.1
MsaG037118 MtrunA17_Chr4g0033961 30.000 130 84 3 168 296 270 393 3.71e-11 64.7
MsaG037118 MtrunA17_Chr1g0162441 40.404 99 59 0 13 111 7 105 3.79e-19 89.0
MsaG037118 MtrunA17_Chr1g0154111 23.952 334 188 9 11 283 24 352 6.54e-19 89.0
MsaG037118 MtrunA17_Chr1g0154191 24.781 343 184 9 11 289 20 352 5.68e-18 85.1
MsaG037118 MtrunA17_Chr1g0163241 46.988 83 42 1 29 111 23 103 1.52e-17 79.7
MsaG037118 MtrunA17_Chr3g0077421 27.126 247 123 8 57 294 1 199 2.02e-17 80.5
MsaG037118 MtrunA17_Chr3g0077441 27.126 247 123 8 57 294 1 199 2.02e-17 80.5
MsaG037118 MtrunA17_Chr1g0163191 43.333 90 49 1 22 111 14 101 3.25e-17 78.6
MsaG037118 MtrunA17_Chr1g0163121 40.650 123 60 3 27 149 9 118 3.62e-17 78.2
MsaG037118 MtrunA17_Chr4g0009491 35.088 114 74 0 12 125 224 337 4.46e-17 82.8
MsaG037118 MtrunA17_Chr4g0009491 36.364 88 56 0 27 114 11 98 3.18e-15 77.0
MsaG037118 MtrunA17_Chr3g0077431 26.316 247 124 6 57 294 1 198 4.70e-17 79.3
MsaG037118 MtrunA17_Chr3g0077361 26.022 269 143 8 12 278 39 253 8.66e-17 82.0
MsaG037118 MtrunA17_Chr1g0163061 39.815 108 58 2 11 114 13 117 1.40e-16 79.3
MsaG037118 MtrunA17_Chr3g0077381 34.188 117 72 2 27 142 34 146 4.40e-16 79.7
MsaG037118 MtrunA17_Chr3g0077381 34.211 114 75 0 12 125 246 359 2.51e-15 77.4
MsaG037118 MtrunA17_Chr1g0162411 38.384 99 59 1 13 111 7 103 1.72e-15 78.2
MsaG037118 MtrunA17_Chr1g0163141 36.885 122 74 2 24 145 6 124 4.71e-15 73.2
MsaG037118 MtrunA17_Chr1g0154151 23.718 312 176 6 16 283 14 307 1.31e-14 74.3
MsaG037118 MtrunA17_Chr1g0154251 35.484 93 59 1 11 103 25 116 2.58e-14 74.7
MsaG037118 MtrunA17_Chr1g0163081 36.923 130 67 5 28 157 5 119 4.33e-14 69.3
MsaG037118 MtrunA17_Chr1g0162161 32.692 156 84 6 28 178 3 142 5.14e-14 69.7
MsaG037118 MtrunA17_Chr1g0154211 35.484 93 59 1 11 103 21 112 7.77e-14 72.8
MsaG037118 MtrunA17_Chr6g0476181 47.619 84 41 2 28 111 1 81 2.36e-13 67.8
MsaG037118 MtrunA17_Chr1g0154101 30.612 147 95 2 11 151 23 168 4.77e-13 71.2
MsaG037118 MtrunA17_Chr1g0154101 25.806 155 110 2 11 162 182 334 7.79e-12 67.4
MsaG037118 MtrunA17_Chr1g0154241 28.289 152 104 3 11 158 20 170 2.58e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG037118 AT4G01580.1 43.269 104 59 0 13 116 30 133 3.56e-21 90.9
MsaG037118 AT1G49475.1 43.137 102 57 1 13 114 34 134 7.50e-21 90.1
MsaG037118 AT3G18990.1 41.414 99 58 0 13 111 6 104 2.71e-20 91.7
MsaG037118 AT3G18990.2 41.414 99 58 0 13 111 6 104 3.99e-20 91.7
MsaG037118 AT3G18960.2 41.346 104 61 0 13 116 30 133 1.02e-19 87.0
MsaG037118 AT3G18960.1 41.346 104 61 0 13 116 30 133 1.24e-19 87.0
MsaG037118 AT3G18960.3 44.318 88 49 0 29 116 9 96 3.64e-16 76.3
MsaG037118 AT3G53310.1 34.314 102 65 2 3 104 2 101 8.03e-12 65.9
MsaG037118 AT1G49480.3 29.032 124 82 2 168 291 104 221 7.06e-11 62.4
MsaG037118 AT1G49480.1 29.032 124 82 2 168 291 104 221 7.06e-11 62.4
MsaG037118 AT1G49480.2 29.032 124 82 2 168 291 104 221 7.06e-11 62.4

Find 66 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTTAAATGAAGGAATT+TGG 0.170862 7:-52136485 MsaT037118.1:CDS
TATTTCTCCACAAACTTTCT+TGG 0.219009 7:+52137745 None:intergenic
TGCAAAGTGGAAATTAAATT+TGG 0.244297 7:-52137677 MsaT037118.1:CDS
TTCCATCAACCATGTGAAAT+TGG 0.262872 7:-52137430 MsaT037118.1:CDS
CCAAAGAGTTGCAGCTAAAA+TGG 0.273442 7:-52137494 MsaT037118.1:CDS
AGAAAGTTTGTGGAGAAATA+TGG 0.293086 7:-52137742 MsaT037118.1:CDS
TGCAGTGATGCTTCTTTAGT+TGG 0.308255 7:+52129971 None:intergenic
GAAAGGATAATTTATCTCTA+AGG 0.312559 7:+52137516 None:intergenic
CTAATCAGGATGACCCTTAC+AGG 0.321649 7:-52136450 MsaT037118.1:CDS
GGGGTATCGTGCGTTCCCTC+TGG 0.348912 7:-52130080 MsaT037118.1:CDS
AATTTCCACTTTGCACCATT+TGG 0.355722 7:+52137685 None:intergenic
ATCCTGATTAGGTACTTTGC+AGG 0.384916 7:+52136462 None:intergenic
TGGCAAAATATTCTTTGAAA+AGG 0.391627 7:-52137644 MsaT037118.1:CDS
TGGTAATAGACACTTTGATT+TGG 0.391800 7:-52131007 MsaT037118.1:CDS
TGGTAATAGACACTTTGATT+TGG 0.391800 7:-52136532 MsaT037118.1:CDS
TTCCAATTTCACATGGTTGA+TGG 0.398771 7:+52137428 None:intergenic
AAATATTCTTTGAAAAGGGT+TGG 0.421071 7:-52137639 MsaT037118.1:CDS
GTTTATTTGTTGTTAAATGA+AGG 0.421453 7:-52136492 MsaT037118.1:CDS
GGCCTGCAAAGTACCTAATC+AGG 0.423211 7:-52136464 MsaT037118.1:CDS
GGCAAAATATTCTTTGAAAA+GGG 0.426542 7:-52137643 MsaT037118.1:CDS
CTGTAAGGGTCATCCTGATT+AGG 0.427523 7:+52136451 None:intergenic
CAGAATATACCACGTTCGTT+TGG 0.431161 7:-52131027 MsaT037118.1:CDS
CAGAATATACCACGTTCGTT+TGG 0.431161 7:-52136552 MsaT037118.1:CDS
GATGATACCAAGAAAGTTTG+TGG 0.432322 7:-52137752 MsaT037118.1:CDS
GATCAATTTGTGGTCCTGTA+AGG 0.446598 7:+52136436 None:intergenic
GCAGCTAAAATGGTCTCTAA+TGG 0.456051 7:-52137484 MsaT037118.1:CDS
GGGTATCGTGCGTTCCCTCT+GGG 0.469737 7:-52130079 MsaT037118.1:CDS
TTTGTGGAGAAATATGGAAA+AGG 0.487637 7:-52137736 MsaT037118.1:CDS
ACTTTGAGATGCTGAACAAT+TGG 0.487702 7:+52136281 None:intergenic
TGAAGTTGAGAAATTGCAAA+AGG 0.487851 7:-52137392 MsaT037118.1:CDS
TTTGATTTGGATAAGAAAAG+AGG 0.493087 7:-52130994 MsaT037118.1:CDS
ATATATCTAAAGACTCCAAA+TGG 0.496307 7:-52137700 MsaT037118.1:CDS
TTAAATTTGGTAAATAGTGA+TGG 0.506736 7:-52137664 MsaT037118.1:CDS
AATGAAGGTAAGTATAGTGC+TGG 0.512079 7:+52136338 None:intergenic
ATAACAAAACAAAGTCCTAC+AGG 0.512900 7:+52130004 None:intergenic
TCTAAAGATGTGCACAATGA+AGG 0.513673 7:+52136323 None:intergenic
GAGGACAATAACTTGAAAGT+TGG 0.514989 7:-52136387 MsaT037118.1:CDS
CCAACTGTGAGATCAATTTG+TGG 0.524959 7:+52136426 None:intergenic
TTAGCTGCAACTCTTTGGAA+AGG 0.537642 7:+52137499 None:intergenic
CATATCTGAAAAGCACAAGA+TGG 0.540339 7:+52137581 None:intergenic
TGCAACTTACCAGACGAAAA+CGG 0.547167 7:+52137067 None:intergenic
ATCAATTTGTGGTCCTGTAA+GGG 0.548089 7:+52136437 None:intergenic
CGCATGACAACAACAAAGGA+TGG 0.548509 7:+52131643 None:intergenic
CGCATGGCAACAACAAAGGA+TGG 0.550805 7:+52137108 None:intergenic
CCACAAATTGATCTCACAGT+TGG 0.558906 7:-52136426 MsaT037118.1:CDS
CTATTGCTTCCAATTTCACA+TGG 0.560323 7:+52137421 None:intergenic
GAGTATCATTCTCTAGCTCA+TGG 0.575939 7:-52137604 MsaT037118.1:CDS
TTTGATTTGGATAAGAAGAG+AGG 0.576081 7:-52136519 MsaT037118.1:CDS
AAATTGATCTCACAGTTGGA+TGG 0.578678 7:-52136422 MsaT037118.1:CDS
ATCTTGTTGTTGCAGAGTCG+TGG 0.579184 7:-52130036 MsaT037118.1:CDS
TGGTTGATGGAATTTAAAAG+AGG 0.579281 7:+52137441 None:intergenic
GTAGCAACTTTATATCATGC+TGG 0.590309 7:-52137370 MsaT037118.1:CDS
CATGGCTAGTGAAACTTCTG+AGG 0.608748 7:-52138952 MsaT037118.1:CDS
AGACTCCAAATGGTGCAAAG+TGG 0.616755 7:-52137690 MsaT037118.1:CDS
AACGACGAGGACCACCCAGA+GGG 0.637534 7:+52130065 None:intergenic
TTCAACGTATGATGCACGCA+TGG 0.638803 7:+52137092 None:intergenic
TGCACGCATGGCAACAACAA+AGG 0.639444 7:+52137104 None:intergenic
TCGTGGTTACAGAAGCCTGT+AGG 0.660207 7:-52130019 MsaT037118.1:CDS
TATCGTGCGTTCCCTCTGGG+TGG 0.661312 7:-52130076 MsaT037118.1:CDS
TGGATGGAAGACATTTGCAG+AGG 0.667798 7:-52136406 MsaT037118.1:CDS
TGCACGCATGACAACAACAA+AGG 0.693553 7:+52131639 None:intergenic
CAACGACGAGGACCACCCAG+AGG 0.710888 7:+52130064 None:intergenic
ACAAGATCACAACAACGACG+AGG 0.724020 7:+52130052 None:intergenic
TGTCTATTACCAAACGAACG+TGG 0.725731 7:+52131018 None:intergenic
TGTCTATTACCAAACGAACG+TGG 0.725731 7:+52136543 None:intergenic
CATGCTGGCAGAGAGTCCAG+AGG 0.751318 7:-52137355 MsaT037118.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 52129967 52138973 52129967 ID=MsaG037118
Chr7 mRNA 52129967 52138973 52129967 ID=MsaT037118.1;Parent=MsaG037118
Chr7 exon 52129967 52130101 52129967 ID=MsaT037118.1.exon7;Parent=MsaT037118.1
Chr7 CDS 52129967 52130101 52129967 ID=cds.MsaT037118.1;Parent=MsaT037118.1
Chr7 exon 52130978 52131046 52130978 ID=MsaT037118.1.exon6;Parent=MsaT037118.1
Chr7 CDS 52130978 52131046 52130978 ID=cds.MsaT037118.1;Parent=MsaT037118.1
Chr7 exon 52131612 52131733 52131612 ID=MsaT037118.1.exon5;Parent=MsaT037118.1
Chr7 CDS 52131612 52131733 52131612 ID=cds.MsaT037118.1;Parent=MsaT037118.1
Chr7 exon 52136283 52136571 52136283 ID=MsaT037118.1.exon4;Parent=MsaT037118.1
Chr7 CDS 52136283 52136571 52136283 ID=cds.MsaT037118.1;Parent=MsaT037118.1
Chr7 exon 52137077 52137201 52137077 ID=MsaT037118.1.exon3;Parent=MsaT037118.1
Chr7 CDS 52137077 52137201 52137077 ID=cds.MsaT037118.1;Parent=MsaT037118.1
Chr7 exon 52137356 52137773 52137356 ID=MsaT037118.1.exon2;Parent=MsaT037118.1
Chr7 CDS 52137356 52137773 52137356 ID=cds.MsaT037118.1;Parent=MsaT037118.1
Chr7 exon 52138893 52138973 52138893 ID=MsaT037118.1.exon1;Parent=MsaT037118.1
Chr7 CDS 52138893 52138973 52138893 ID=cds.MsaT037118.1;Parent=MsaT037118.1
Gene Sequence

>MsaT037118.1

ATGGCTAGTGAAACTTCTGAGGTGAAGCCAATCCACTTTTTCAAGATAATACTTGCTCAAAATCTTCATGCAGAAAAGCTTATGATACCAAGAAAGTTTGTGGAGAAATATGGAAAAGGTTTATCAAATACTATATATCTAAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTGGTAAATAGTGATGGCAAAATATTCTTTGAAAAGGGTTGGAAAGAATTTGCAGAGTATCATTCTCTAGCTCATGGCCATCTTGTGCTTTTCAGATATGAAAAAACATCTCTTTTTGAGGTACATATCTTTGATAAGAGTGCCTTAGAGATAAATTATCCTTTCCAAAGAGTTGCAGCTAAAATGGTCTCTAATGGTCAAAAGAGAAAAGCTAACTCCTCTTTTAAATTCCATCAACCATGTGAAATTGGAAGCAATAGTTGTGTTGAAGTTGAGAAATTGCAAAAGGTAGCAACTTTATATCATGCTGGCAGAGAGTCCAGAGGAAAACAAGTGATTCCTACTGCTGAGAAAATTACAACTGTTGAAAGAGCACAATCTTTCAAAACAAGTAATCCATCCTTTGTTGTTGCCATGCGTGCATCATACGTTGAACACCGTTTTCGTCTGAATATACCACGTTCGTTTGGTAATAGACACTTTGATTTGGATAAGAAGAGAGGAGATGTTTATTTGTTGTTAAATGAAGGAATTTGGCCTGCAAAGTACCTAATCAGGATGACCCTTACAGGACCACAAATTGATCTCACAGTTGGATGGAAGACATTTGCAGAGGACAATAACTTGAAAGTTGGCGATATTTGCAAATTTGAGCTCATCTCCAGCACTATACTTACCTTCATTGTGCACATCTTTAGAGAGACTGACAATGACAACACCAATTGTTCAGCATCTCAAAGGAAAGAAGTGATTACTGCTAAGAGAGTTACAGCTCTTGAAAGAGCACAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGCGTGCATCATACGTTGAACATCATTTTCTACTGAATATACCACGTTCGTTTGGTAATAGACACTTTGATTTGGATAAGAAAAGAGGAGATATTCATTTTCAGGGGTATCGTGCGTTCCCTCTGGGTGGTCCTCGTCGTTGTTGTGATCTTGTTGTTGCAGAGTCGTGGTTACAGAAGCCTGTAGGACTTTGTTTTGTTATTGCAGCTGCTCCAACTAAAGAAGCATCACTGCAATAA

Protein sequence

>MsaT037118.1

MASETSEVKPIHFFKIILAQNLHAEKLMIPRKFVEKYGKGLSNTIYLKTPNGAKWKLNLVNSDGKIFFEKGWKEFAEYHSLAHGHLVLFRYEKTSLFEVHIFDKSALEINYPFQRVAAKMVSNGQKRKANSSFKFHQPCEIGSNSCVEVEKLQKVATLYHAGRESRGKQVIPTAEKITTVERAQSFKTSNPSFVVAMRASYVEHRFRLNIPRSFGNRHFDLDKKRGDVYLLLNEGIWPAKYLIRMTLTGPQIDLTVGWKTFAEDNNLKVGDICKFELISSTILTFIVHIFRETDNDNTNCSASQRKEVITAKRVTALERAQSFKTCNPSFVVVMRASYVEHHFLLNIPRSFGNRHFDLDKKRGDIHFQGYRAFPLGGPRRCCDLVVAESWLQKPVGLCFVIAAAPTKEASLQ*