Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037118 | XP_003622663.1 | 37.441 | 211 | 75 | 5 | 207 | 367 | 26 | 229 | 7.04e-26 | 117 |
MsaG037118 | XP_003622663.1 | 82.295 | 305 | 53 | 1 | 1 | 305 | 1 | 304 | 0.0 | 528 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037118 | sp|Q9ZSH7|Y4158_ARATH | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 3.50e-20 | 90.9 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037118 | tr|G7KVV4|G7KVV4_MEDTR | 37.441 | 211 | 75 | 5 | 207 | 367 | 26 | 229 | 3.36e-26 | 117 |
MsaG037118 | tr|G7KVV4|G7KVV4_MEDTR | 82.295 | 305 | 53 | 1 | 1 | 305 | 1 | 304 | 0.0 | 528 |
Gene ID | Type | Classification |
---|---|---|
MsaG037118 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000238 | MsaG037118 | 0.819602 | 1.863889e-52 | 4.056247e-50 |
MsaG001529 | MsaG037118 | 0.825759 | 6.993281e-54 | 1.796388e-51 |
MsaG005116 | MsaG037118 | 0.816098 | 1.142906e-51 | 2.271652e-49 |
MsaG005342 | MsaG037118 | 0.858583 | 1.457948e-62 | 1.074450e-59 |
MsaG005533 | MsaG037118 | 0.809631 | 2.937265e-50 | 4.971535e-48 |
MsaG009196 | MsaG037118 | 0.829855 | 7.321596e-55 | 2.110177e-52 |
MsaG011226 | MsaG037118 | 0.850005 | 4.273720e-60 | 2.316590e-57 |
MsaG011240 | MsaG037118 | 0.885489 | 1.679242e-71 | 3.938528e-68 |
MsaG012262 | MsaG037118 | 0.807633 | 7.809233e-50 | 1.259676e-47 |
MsaG012302 | MsaG037118 | 0.803093 | 6.912821e-49 | 1.002754e-46 |
MsaG016945 | MsaG037118 | 0.817050 | 7.007245e-52 | 1.427284e-49 |
MsaG021053 | MsaG037118 | 0.812742 | 6.258866e-51 | 1.143269e-48 |
MsaG022304 | MsaG037118 | 0.828315 | 1.722444e-54 | 4.752014e-52 |
MsaG023223 | MsaG037118 | 0.807280 | 9.271850e-50 | 1.483050e-47 |
MsaG023226 | MsaG037118 | 0.829650 | 8.210216e-55 | 2.352423e-52 |
MsaG023786 | MsaG037118 | 0.804643 | 3.305515e-49 | 4.969888e-47 |
MsaG025598 | MsaG037118 | 0.813641 | 3.981366e-51 | 7.437991e-49 |
MsaG026698 | MsaG037118 | 0.856170 | 7.481458e-62 | 5.043038e-59 |
MsaG027172 | MsaG037118 | 0.808350 | 5.505546e-50 | 9.035178e-48 |
MsaG027651 | MsaG037118 | 0.802069 | 1.121276e-48 | 1.588727e-46 |
MsaG027747 | MsaG037118 | 0.858795 | 1.261260e-62 | 9.368214e-60 |
MsaG028056 | MsaG037118 | 0.808424 | 5.309796e-50 | 8.729590e-48 |
MsaG028967 | MsaG037118 | 0.824354 | 1.495897e-53 | 3.697284e-51 |
MsaG030517 | MsaG037118 | 0.809714 | 2.819831e-50 | 4.782353e-48 |
MsaG034943 | MsaG037118 | 0.804844 | 3.002298e-49 | 4.535243e-47 |
MsaG035155 | MsaG037118 | 0.842978 | 3.462458e-58 | 1.485757e-55 |
MsaG037118 | MsaG037122 | 0.943138 | 6.226125e-102 | 7.775002e-97 |
MsaG037118 | MsaG037124 | 0.943121 | 6.413462e-102 | 7.989836e-97 |
MsaG037118 | MsaG037226 | 0.973518 | 6.360672e-136 | 8.977045e-130 |
MsaG037118 | MsaG037234 | 0.885438 | 1.754057e-71 | 4.104353e-68 |
MsaG037118 | MsaG037236 | 0.900917 | 1.046613e-77 | 5.652690e-74 |
MsaG037118 | MsaG037355 | 0.904031 | 4.398562e-79 | 2.857667e-75 |
MsaG037118 | MsaG037407 | 0.893670 | 1.131415e-74 | 4.054502e-71 |
MsaG037118 | MsaG037412 | 0.922890 | 1.420426e-88 | 3.312810e-84 |
MsaG037118 | MsaG039917 | 0.802799 | 7.945328e-49 | 1.144705e-46 |
MsaG037118 | MsaG040310 | 0.828412 | 1.632227e-54 | 4.515564e-52 |
MsaG037118 | MsaG040539 | 0.824088 | 1.725736e-53 | 4.234514e-51 |
MsaG037118 | MsaG041599 | 0.820880 | 9.528214e-53 | 2.144932e-50 |
MsaG037118 | MsaG041873 | 0.819596 | 1.870387e-52 | 4.069656e-50 |
MsaG037118 | MsaG044307 | 0.818719 | 2.955363e-52 | 6.284312e-50 |
MsaG037118 | MsaG044309 | 0.812030 | 8.937504e-51 | 1.603999e-48 |
MsaG037118 | MsaG044315 | 0.806095 | 1.645632e-49 | 2.559578e-47 |
MsaG037118 | MsaG045894 | 0.806881 | 1.125399e-49 | 1.783181e-47 |
MsaG037118 | MsaG045922 | 0.860218 | 4.731164e-63 | 3.709761e-60 |
MsaG037118 | MsaG046214 | 0.809176 | 3.674707e-50 | 6.151646e-48 |
MsaG037118 | MsaG001943 | 0.802333 | 9.903720e-49 | 1.411774e-46 |
MsaG037118 | MsaG008053 | 0.829630 | 8.299104e-55 | 2.376605e-52 |
MsaG037118 | MsaG014587 | 0.889161 | 6.794976e-73 | 1.917372e-69 |
MsaG037118 | MsaG013062 | 0.813546 | 4.176353e-51 | 7.783852e-49 |
MsaG037118 | MsaG027793 | 0.808648 | 4.758900e-50 | 7.866300e-48 |
MsaG037118 | MsaG036640 | 0.811000 | 1.492434e-50 | 2.611604e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037118 | MtrunA17_Chr7g0233521 | 82.671 | 277 | 47 | 1 | 28 | 304 | 1 | 276 | 5.11e-173 | 484 |
MsaG037118 | MtrunA17_Chr7g0233521 | 81.538 | 65 | 12 | 0 | 303 | 367 | 138 | 202 | 7.96e-30 | 116 |
MsaG037118 | MtrunA17_Chr7g0233541 | 69.932 | 296 | 71 | 5 | 28 | 306 | 1 | 295 | 2.27e-148 | 422 |
MsaG037118 | MtrunA17_Chr7g0233541 | 90.909 | 66 | 6 | 0 | 303 | 368 | 153 | 218 | 4.03e-33 | 126 |
MsaG037118 | MtrunA17_Chr7g0233561 | 65.015 | 323 | 95 | 4 | 1 | 306 | 6 | 327 | 1.04e-141 | 407 |
MsaG037118 | MtrunA17_Chr7g0233561 | 72.059 | 68 | 18 | 1 | 303 | 369 | 183 | 250 | 1.17e-21 | 95.1 |
MsaG037118 | MtrunA17_Chr3g0131891 | 65.109 | 321 | 88 | 5 | 1 | 306 | 7 | 318 | 1.11e-141 | 407 |
MsaG037118 | MtrunA17_Chr3g0131891 | 33.937 | 221 | 83 | 5 | 204 | 368 | 29 | 242 | 4.83e-27 | 110 |
MsaG037118 | MtrunA17_Chr7g0233531 | 66.781 | 292 | 66 | 4 | 28 | 304 | 1 | 276 | 1.44e-130 | 377 |
MsaG037118 | MtrunA17_Chr7g0233531 | 41.341 | 179 | 54 | 5 | 239 | 368 | 26 | 202 | 3.01e-29 | 115 |
MsaG037118 | MtrunA17_Chr7g0233571 | 61.111 | 216 | 66 | 2 | 5 | 203 | 2 | 216 | 2.38e-86 | 262 |
MsaG037118 | MtrunA17_Chr8g0390841 | 35.082 | 305 | 164 | 6 | 11 | 291 | 37 | 331 | 3.58e-47 | 169 |
MsaG037118 | MtrunA17_Chr1g0163071 | 34.564 | 298 | 150 | 7 | 28 | 291 | 1 | 287 | 4.28e-47 | 163 |
MsaG037118 | MtrunA17_Chr1g0208771 | 34.130 | 293 | 148 | 7 | 29 | 291 | 13 | 290 | 1.28e-45 | 163 |
MsaG037118 | MtrunA17_Chr3g0103181 | 34.564 | 298 | 151 | 9 | 10 | 290 | 9 | 279 | 3.51e-41 | 147 |
MsaG037118 | MtrunA17_Chr1g0163181 | 30.892 | 314 | 193 | 7 | 22 | 318 | 14 | 320 | 1.63e-33 | 130 |
MsaG037118 | MtrunA17_Chr1g0163221 | 31.023 | 303 | 177 | 10 | 5 | 290 | 3 | 290 | 6.03e-32 | 124 |
MsaG037118 | MtrunA17_Chr3g0103191 | 52.252 | 111 | 50 | 2 | 1 | 111 | 1 | 108 | 7.55e-31 | 118 |
MsaG037118 | MtrunA17_Chr3g0103151 | 54.902 | 102 | 44 | 1 | 10 | 111 | 9 | 108 | 8.26e-31 | 115 |
MsaG037118 | MtrunA17_Chr1g0171611 | 30.450 | 289 | 163 | 7 | 10 | 289 | 6 | 265 | 6.02e-29 | 114 |
MsaG037118 | MtrunA17_Chr5g0419201 | 46.465 | 99 | 53 | 0 | 13 | 111 | 16 | 114 | 9.41e-29 | 111 |
MsaG037118 | MtrunA17_Chr1g0163251 | 30.323 | 310 | 202 | 8 | 22 | 326 | 14 | 314 | 2.03e-28 | 115 |
MsaG037118 | MtrunA17_Chr1g0163231 | 30.405 | 296 | 166 | 9 | 10 | 289 | 6 | 277 | 2.12e-28 | 113 |
MsaG037118 | MtrunA17_Chr3g0103171 | 29.455 | 275 | 166 | 8 | 29 | 290 | 6 | 265 | 4.60e-28 | 111 |
MsaG037118 | MtrunA17_Chr1g0163261 | 29.773 | 309 | 173 | 9 | 10 | 298 | 6 | 290 | 1.66e-27 | 110 |
MsaG037118 | MtrunA17_Chr4g0067431 | 29.043 | 303 | 188 | 10 | 11 | 290 | 13 | 311 | 2.83e-27 | 110 |
MsaG037118 | MtrunA17_Chr5g0429931 | 28.727 | 275 | 147 | 8 | 29 | 294 | 11 | 245 | 4.97e-27 | 108 |
MsaG037118 | MtrunA17_Chr1g0163201 | 29.964 | 277 | 170 | 6 | 29 | 291 | 19 | 285 | 6.90e-27 | 111 |
MsaG037118 | MtrunA17_Chr3g0077451 | 27.076 | 277 | 144 | 7 | 27 | 294 | 10 | 237 | 2.28e-25 | 103 |
MsaG037118 | MtrunA17_Chr3g0077411 | 27.797 | 295 | 168 | 9 | 11 | 294 | 260 | 520 | 1.50e-23 | 102 |
MsaG037118 | MtrunA17_Chr3g0077411 | 26.148 | 283 | 139 | 8 | 12 | 286 | 24 | 244 | 2.60e-21 | 95.9 |
MsaG037118 | MtrunA17_Chr1g0154041 | 25.978 | 358 | 197 | 12 | 8 | 304 | 11 | 361 | 1.72e-22 | 99.8 |
MsaG037118 | MtrunA17_Chr1g0154161 | 24.749 | 299 | 206 | 4 | 11 | 299 | 28 | 317 | 2.41e-22 | 97.1 |
MsaG037118 | MtrunA17_Chr1g0163131 | 28.889 | 315 | 169 | 10 | 6 | 287 | 11 | 303 | 4.81e-22 | 95.9 |
MsaG037118 | MtrunA17_Chr1g0154131 | 28.772 | 285 | 177 | 7 | 11 | 278 | 182 | 457 | 4.98e-22 | 97.8 |
MsaG037118 | MtrunA17_Chr1g0154171 | 25.449 | 334 | 183 | 10 | 11 | 290 | 21 | 342 | 5.40e-22 | 96.7 |
MsaG037118 | MtrunA17_Chr6g0467351 | 38.406 | 138 | 70 | 3 | 11 | 139 | 13 | 144 | 8.56e-21 | 90.5 |
MsaG037118 | MtrunA17_Chr3g0077461 | 29.779 | 272 | 134 | 9 | 12 | 278 | 236 | 455 | 1.01e-20 | 94.0 |
MsaG037118 | MtrunA17_Chr3g0077461 | 39.535 | 86 | 52 | 0 | 29 | 114 | 23 | 108 | 1.37e-17 | 84.3 |
MsaG037118 | MtrunA17_Chr1g0163101 | 36.806 | 144 | 79 | 3 | 6 | 149 | 10 | 141 | 1.28e-19 | 85.9 |
MsaG037118 | MtrunA17_Chr4g0033961 | 40.000 | 105 | 61 | 1 | 13 | 115 | 6 | 110 | 1.74e-19 | 90.1 |
MsaG037118 | MtrunA17_Chr4g0033961 | 30.000 | 130 | 84 | 3 | 168 | 296 | 270 | 393 | 3.71e-11 | 64.7 |
MsaG037118 | MtrunA17_Chr1g0162441 | 40.404 | 99 | 59 | 0 | 13 | 111 | 7 | 105 | 3.79e-19 | 89.0 |
MsaG037118 | MtrunA17_Chr1g0154111 | 23.952 | 334 | 188 | 9 | 11 | 283 | 24 | 352 | 6.54e-19 | 89.0 |
MsaG037118 | MtrunA17_Chr1g0154191 | 24.781 | 343 | 184 | 9 | 11 | 289 | 20 | 352 | 5.68e-18 | 85.1 |
MsaG037118 | MtrunA17_Chr1g0163241 | 46.988 | 83 | 42 | 1 | 29 | 111 | 23 | 103 | 1.52e-17 | 79.7 |
MsaG037118 | MtrunA17_Chr3g0077421 | 27.126 | 247 | 123 | 8 | 57 | 294 | 1 | 199 | 2.02e-17 | 80.5 |
MsaG037118 | MtrunA17_Chr3g0077441 | 27.126 | 247 | 123 | 8 | 57 | 294 | 1 | 199 | 2.02e-17 | 80.5 |
MsaG037118 | MtrunA17_Chr1g0163191 | 43.333 | 90 | 49 | 1 | 22 | 111 | 14 | 101 | 3.25e-17 | 78.6 |
MsaG037118 | MtrunA17_Chr1g0163121 | 40.650 | 123 | 60 | 3 | 27 | 149 | 9 | 118 | 3.62e-17 | 78.2 |
MsaG037118 | MtrunA17_Chr4g0009491 | 35.088 | 114 | 74 | 0 | 12 | 125 | 224 | 337 | 4.46e-17 | 82.8 |
MsaG037118 | MtrunA17_Chr4g0009491 | 36.364 | 88 | 56 | 0 | 27 | 114 | 11 | 98 | 3.18e-15 | 77.0 |
MsaG037118 | MtrunA17_Chr3g0077431 | 26.316 | 247 | 124 | 6 | 57 | 294 | 1 | 198 | 4.70e-17 | 79.3 |
MsaG037118 | MtrunA17_Chr3g0077361 | 26.022 | 269 | 143 | 8 | 12 | 278 | 39 | 253 | 8.66e-17 | 82.0 |
MsaG037118 | MtrunA17_Chr1g0163061 | 39.815 | 108 | 58 | 2 | 11 | 114 | 13 | 117 | 1.40e-16 | 79.3 |
MsaG037118 | MtrunA17_Chr3g0077381 | 34.188 | 117 | 72 | 2 | 27 | 142 | 34 | 146 | 4.40e-16 | 79.7 |
MsaG037118 | MtrunA17_Chr3g0077381 | 34.211 | 114 | 75 | 0 | 12 | 125 | 246 | 359 | 2.51e-15 | 77.4 |
MsaG037118 | MtrunA17_Chr1g0162411 | 38.384 | 99 | 59 | 1 | 13 | 111 | 7 | 103 | 1.72e-15 | 78.2 |
MsaG037118 | MtrunA17_Chr1g0163141 | 36.885 | 122 | 74 | 2 | 24 | 145 | 6 | 124 | 4.71e-15 | 73.2 |
MsaG037118 | MtrunA17_Chr1g0154151 | 23.718 | 312 | 176 | 6 | 16 | 283 | 14 | 307 | 1.31e-14 | 74.3 |
MsaG037118 | MtrunA17_Chr1g0154251 | 35.484 | 93 | 59 | 1 | 11 | 103 | 25 | 116 | 2.58e-14 | 74.7 |
MsaG037118 | MtrunA17_Chr1g0163081 | 36.923 | 130 | 67 | 5 | 28 | 157 | 5 | 119 | 4.33e-14 | 69.3 |
MsaG037118 | MtrunA17_Chr1g0162161 | 32.692 | 156 | 84 | 6 | 28 | 178 | 3 | 142 | 5.14e-14 | 69.7 |
MsaG037118 | MtrunA17_Chr1g0154211 | 35.484 | 93 | 59 | 1 | 11 | 103 | 21 | 112 | 7.77e-14 | 72.8 |
MsaG037118 | MtrunA17_Chr6g0476181 | 47.619 | 84 | 41 | 2 | 28 | 111 | 1 | 81 | 2.36e-13 | 67.8 |
MsaG037118 | MtrunA17_Chr1g0154101 | 30.612 | 147 | 95 | 2 | 11 | 151 | 23 | 168 | 4.77e-13 | 71.2 |
MsaG037118 | MtrunA17_Chr1g0154101 | 25.806 | 155 | 110 | 2 | 11 | 162 | 182 | 334 | 7.79e-12 | 67.4 |
MsaG037118 | MtrunA17_Chr1g0154241 | 28.289 | 152 | 104 | 3 | 11 | 158 | 20 | 170 | 2.58e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037118 | AT4G01580.1 | 43.269 | 104 | 59 | 0 | 13 | 116 | 30 | 133 | 3.56e-21 | 90.9 |
MsaG037118 | AT1G49475.1 | 43.137 | 102 | 57 | 1 | 13 | 114 | 34 | 134 | 7.50e-21 | 90.1 |
MsaG037118 | AT3G18990.1 | 41.414 | 99 | 58 | 0 | 13 | 111 | 6 | 104 | 2.71e-20 | 91.7 |
MsaG037118 | AT3G18990.2 | 41.414 | 99 | 58 | 0 | 13 | 111 | 6 | 104 | 3.99e-20 | 91.7 |
MsaG037118 | AT3G18960.2 | 41.346 | 104 | 61 | 0 | 13 | 116 | 30 | 133 | 1.02e-19 | 87.0 |
MsaG037118 | AT3G18960.1 | 41.346 | 104 | 61 | 0 | 13 | 116 | 30 | 133 | 1.24e-19 | 87.0 |
MsaG037118 | AT3G18960.3 | 44.318 | 88 | 49 | 0 | 29 | 116 | 9 | 96 | 3.64e-16 | 76.3 |
MsaG037118 | AT3G53310.1 | 34.314 | 102 | 65 | 2 | 3 | 104 | 2 | 101 | 8.03e-12 | 65.9 |
MsaG037118 | AT1G49480.3 | 29.032 | 124 | 82 | 2 | 168 | 291 | 104 | 221 | 7.06e-11 | 62.4 |
MsaG037118 | AT1G49480.1 | 29.032 | 124 | 82 | 2 | 168 | 291 | 104 | 221 | 7.06e-11 | 62.4 |
MsaG037118 | AT1G49480.2 | 29.032 | 124 | 82 | 2 | 168 | 291 | 104 | 221 | 7.06e-11 | 62.4 |
Find 66 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTGTTAAATGAAGGAATT+TGG | 0.170862 | 7:-52136485 | MsaT037118.1:CDS |
TATTTCTCCACAAACTTTCT+TGG | 0.219009 | 7:+52137745 | None:intergenic |
TGCAAAGTGGAAATTAAATT+TGG | 0.244297 | 7:-52137677 | MsaT037118.1:CDS |
TTCCATCAACCATGTGAAAT+TGG | 0.262872 | 7:-52137430 | MsaT037118.1:CDS |
CCAAAGAGTTGCAGCTAAAA+TGG | 0.273442 | 7:-52137494 | MsaT037118.1:CDS |
AGAAAGTTTGTGGAGAAATA+TGG | 0.293086 | 7:-52137742 | MsaT037118.1:CDS |
TGCAGTGATGCTTCTTTAGT+TGG | 0.308255 | 7:+52129971 | None:intergenic |
GAAAGGATAATTTATCTCTA+AGG | 0.312559 | 7:+52137516 | None:intergenic |
CTAATCAGGATGACCCTTAC+AGG | 0.321649 | 7:-52136450 | MsaT037118.1:CDS |
GGGGTATCGTGCGTTCCCTC+TGG | 0.348912 | 7:-52130080 | MsaT037118.1:CDS |
AATTTCCACTTTGCACCATT+TGG | 0.355722 | 7:+52137685 | None:intergenic |
ATCCTGATTAGGTACTTTGC+AGG | 0.384916 | 7:+52136462 | None:intergenic |
TGGCAAAATATTCTTTGAAA+AGG | 0.391627 | 7:-52137644 | MsaT037118.1:CDS |
TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7:-52131007 | MsaT037118.1:CDS |
TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7:-52136532 | MsaT037118.1:CDS |
TTCCAATTTCACATGGTTGA+TGG | 0.398771 | 7:+52137428 | None:intergenic |
AAATATTCTTTGAAAAGGGT+TGG | 0.421071 | 7:-52137639 | MsaT037118.1:CDS |
GTTTATTTGTTGTTAAATGA+AGG | 0.421453 | 7:-52136492 | MsaT037118.1:CDS |
GGCCTGCAAAGTACCTAATC+AGG | 0.423211 | 7:-52136464 | MsaT037118.1:CDS |
GGCAAAATATTCTTTGAAAA+GGG | 0.426542 | 7:-52137643 | MsaT037118.1:CDS |
CTGTAAGGGTCATCCTGATT+AGG | 0.427523 | 7:+52136451 | None:intergenic |
CAGAATATACCACGTTCGTT+TGG | 0.431161 | 7:-52131027 | MsaT037118.1:CDS |
CAGAATATACCACGTTCGTT+TGG | 0.431161 | 7:-52136552 | MsaT037118.1:CDS |
GATGATACCAAGAAAGTTTG+TGG | 0.432322 | 7:-52137752 | MsaT037118.1:CDS |
GATCAATTTGTGGTCCTGTA+AGG | 0.446598 | 7:+52136436 | None:intergenic |
GCAGCTAAAATGGTCTCTAA+TGG | 0.456051 | 7:-52137484 | MsaT037118.1:CDS |
GGGTATCGTGCGTTCCCTCT+GGG | 0.469737 | 7:-52130079 | MsaT037118.1:CDS |
TTTGTGGAGAAATATGGAAA+AGG | 0.487637 | 7:-52137736 | MsaT037118.1:CDS |
ACTTTGAGATGCTGAACAAT+TGG | 0.487702 | 7:+52136281 | None:intergenic |
TGAAGTTGAGAAATTGCAAA+AGG | 0.487851 | 7:-52137392 | MsaT037118.1:CDS |
TTTGATTTGGATAAGAAAAG+AGG | 0.493087 | 7:-52130994 | MsaT037118.1:CDS |
ATATATCTAAAGACTCCAAA+TGG | 0.496307 | 7:-52137700 | MsaT037118.1:CDS |
TTAAATTTGGTAAATAGTGA+TGG | 0.506736 | 7:-52137664 | MsaT037118.1:CDS |
AATGAAGGTAAGTATAGTGC+TGG | 0.512079 | 7:+52136338 | None:intergenic |
ATAACAAAACAAAGTCCTAC+AGG | 0.512900 | 7:+52130004 | None:intergenic |
TCTAAAGATGTGCACAATGA+AGG | 0.513673 | 7:+52136323 | None:intergenic |
GAGGACAATAACTTGAAAGT+TGG | 0.514989 | 7:-52136387 | MsaT037118.1:CDS |
CCAACTGTGAGATCAATTTG+TGG | 0.524959 | 7:+52136426 | None:intergenic |
TTAGCTGCAACTCTTTGGAA+AGG | 0.537642 | 7:+52137499 | None:intergenic |
CATATCTGAAAAGCACAAGA+TGG | 0.540339 | 7:+52137581 | None:intergenic |
TGCAACTTACCAGACGAAAA+CGG | 0.547167 | 7:+52137067 | None:intergenic |
ATCAATTTGTGGTCCTGTAA+GGG | 0.548089 | 7:+52136437 | None:intergenic |
CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7:+52131643 | None:intergenic |
CGCATGGCAACAACAAAGGA+TGG | 0.550805 | 7:+52137108 | None:intergenic |
CCACAAATTGATCTCACAGT+TGG | 0.558906 | 7:-52136426 | MsaT037118.1:CDS |
CTATTGCTTCCAATTTCACA+TGG | 0.560323 | 7:+52137421 | None:intergenic |
GAGTATCATTCTCTAGCTCA+TGG | 0.575939 | 7:-52137604 | MsaT037118.1:CDS |
TTTGATTTGGATAAGAAGAG+AGG | 0.576081 | 7:-52136519 | MsaT037118.1:CDS |
AAATTGATCTCACAGTTGGA+TGG | 0.578678 | 7:-52136422 | MsaT037118.1:CDS |
ATCTTGTTGTTGCAGAGTCG+TGG | 0.579184 | 7:-52130036 | MsaT037118.1:CDS |
TGGTTGATGGAATTTAAAAG+AGG | 0.579281 | 7:+52137441 | None:intergenic |
GTAGCAACTTTATATCATGC+TGG | 0.590309 | 7:-52137370 | MsaT037118.1:CDS |
CATGGCTAGTGAAACTTCTG+AGG | 0.608748 | 7:-52138952 | MsaT037118.1:CDS |
AGACTCCAAATGGTGCAAAG+TGG | 0.616755 | 7:-52137690 | MsaT037118.1:CDS |
AACGACGAGGACCACCCAGA+GGG | 0.637534 | 7:+52130065 | None:intergenic |
TTCAACGTATGATGCACGCA+TGG | 0.638803 | 7:+52137092 | None:intergenic |
TGCACGCATGGCAACAACAA+AGG | 0.639444 | 7:+52137104 | None:intergenic |
TCGTGGTTACAGAAGCCTGT+AGG | 0.660207 | 7:-52130019 | MsaT037118.1:CDS |
TATCGTGCGTTCCCTCTGGG+TGG | 0.661312 | 7:-52130076 | MsaT037118.1:CDS |
TGGATGGAAGACATTTGCAG+AGG | 0.667798 | 7:-52136406 | MsaT037118.1:CDS |
TGCACGCATGACAACAACAA+AGG | 0.693553 | 7:+52131639 | None:intergenic |
CAACGACGAGGACCACCCAG+AGG | 0.710888 | 7:+52130064 | None:intergenic |
ACAAGATCACAACAACGACG+AGG | 0.724020 | 7:+52130052 | None:intergenic |
TGTCTATTACCAAACGAACG+TGG | 0.725731 | 7:+52131018 | None:intergenic |
TGTCTATTACCAAACGAACG+TGG | 0.725731 | 7:+52136543 | None:intergenic |
CATGCTGGCAGAGAGTCCAG+AGG | 0.751318 | 7:-52137355 | MsaT037118.1:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 52129967 | 52138973 | 52129967 | ID=MsaG037118 |
Chr7 | mRNA | 52129967 | 52138973 | 52129967 | ID=MsaT037118.1;Parent=MsaG037118 |
Chr7 | exon | 52129967 | 52130101 | 52129967 | ID=MsaT037118.1.exon7;Parent=MsaT037118.1 |
Chr7 | CDS | 52129967 | 52130101 | 52129967 | ID=cds.MsaT037118.1;Parent=MsaT037118.1 |
Chr7 | exon | 52130978 | 52131046 | 52130978 | ID=MsaT037118.1.exon6;Parent=MsaT037118.1 |
Chr7 | CDS | 52130978 | 52131046 | 52130978 | ID=cds.MsaT037118.1;Parent=MsaT037118.1 |
Chr7 | exon | 52131612 | 52131733 | 52131612 | ID=MsaT037118.1.exon5;Parent=MsaT037118.1 |
Chr7 | CDS | 52131612 | 52131733 | 52131612 | ID=cds.MsaT037118.1;Parent=MsaT037118.1 |
Chr7 | exon | 52136283 | 52136571 | 52136283 | ID=MsaT037118.1.exon4;Parent=MsaT037118.1 |
Chr7 | CDS | 52136283 | 52136571 | 52136283 | ID=cds.MsaT037118.1;Parent=MsaT037118.1 |
Chr7 | exon | 52137077 | 52137201 | 52137077 | ID=MsaT037118.1.exon3;Parent=MsaT037118.1 |
Chr7 | CDS | 52137077 | 52137201 | 52137077 | ID=cds.MsaT037118.1;Parent=MsaT037118.1 |
Chr7 | exon | 52137356 | 52137773 | 52137356 | ID=MsaT037118.1.exon2;Parent=MsaT037118.1 |
Chr7 | CDS | 52137356 | 52137773 | 52137356 | ID=cds.MsaT037118.1;Parent=MsaT037118.1 |
Chr7 | exon | 52138893 | 52138973 | 52138893 | ID=MsaT037118.1.exon1;Parent=MsaT037118.1 |
Chr7 | CDS | 52138893 | 52138973 | 52138893 | ID=cds.MsaT037118.1;Parent=MsaT037118.1 |
Gene Sequence |
Protein sequence |