AlfalfaGEDB | MsaG037150

M. sativa ssp. caerulea / MsaG037150

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037150	XP_003622663.1	90.141	213	21	0	1	213	1	213	1.98e-137	398

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037150	sp\|Q9ZSH7\|Y4158_ARATH	35.075	134	82	1	13	141	30	163	5.72e-22	92.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037150	tr\|G7KVV4\|G7KVV4_MEDTR	90.141	213	21	0	1	213	1	213	9.44e-138	398

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037150	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000032	MsaG037150	0.805886	1.819517e-49	2.816107e-47
MsaG000137	MsaG037150	0.819535	1.931130e-52	4.195161e-50
MsaG000202	MsaG037150	0.816151	1.112278e-51	2.213829e-49
MsaG000344	MsaG037150	0.807288	9.237529e-50	1.477814e-47
MsaG000350	MsaG037150	0.805795	1.901316e-49	2.936380e-47
MsaG001365	MsaG037150	0.810146	2.278440e-50	3.904742e-48
MsaG001374	MsaG037150	0.815206	1.801956e-51	3.501567e-49
MsaG001523	MsaG037150	0.804443	3.636261e-49	5.441980e-47
MsaG001767	MsaG037150	0.873885	2.142779e-67	2.934712e-64
MsaG002298	MsaG037150	0.808935	4.134415e-50	6.881455e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037150	MtrunA17_Chr7g0233521	89.785	186	19	0	28	213	1	186	5.46e-123	350
MsaG037150	MtrunA17_Chr7g0233541	75.743	202	32	3	28	213	1	201	2.78e-103	300
MsaG037150	MtrunA17_Chr7g0233561	65.351	228	63	3	1	213	6	232	8.60e-99	290
MsaG037150	MtrunA17_Chr7g0233571	63.721	215	61	1	5	202	2	216	2.16e-97	283
MsaG037150	MtrunA17_Chr3g0131891	63.596	228	59	5	1	213	7	225	4.96e-92	273
MsaG037150	MtrunA17_Chr7g0233531	60.000	200	51	4	28	213	1	185	2.64e-71	218
MsaG037150	MtrunA17_Chr8g0390841	35.294	238	127	5	11	223	37	272	1.75e-37	136
MsaG037150	MtrunA17_Chr3g0103191	31.944	216	108	6	6	201	5	201	5.98e-31	114
MsaG037150	MtrunA17_Chr3g0103181	34.685	222	107	8	6	210	5	205	6.93e-31	114
MsaG037150	MtrunA17_Chr3g0103151	49.057	106	52	1	6	111	5	108	1.82e-30	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037150	AT4G01580.1	35.075	134	82	1	13	141	30	163	5.82e-23	92.0
MsaG037150	AT3G18990.1	43.434	99	56	0	13	111	6	104	7.69e-23	95.1
MsaG037150	AT3G18990.2	43.434	99	56	0	13	111	6	104	1.12e-22	95.1
MsaG037150	AT1G49475.1	44.118	102	56	1	13	114	34	134	1.35e-22	91.3
MsaG037150	AT3G18960.2	39.423	104	63	0	13	116	30	133	1.14e-21	89.0
MsaG037150	AT3G18960.1	39.423	104	63	0	13	116	30	133	1.49e-21	89.0
MsaG037150	AT3G18960.3	42.045	88	51	0	29	116	9	96	6.69e-18	78.6

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Find 33 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAAAGTTTGTGGAGAAATA+TGG	0.293086	7:+52573188	MsaT037150.1:CDS
AGAAGCTTCTTCTTTCACTT+GGG	0.559960	7:-52574533	None:intergenic
AGACTCCAAATGGTGCAAAA+TGG	0.337543	7:+52573240	MsaT037150.1:CDS
AGCAACTTACCATAAGAAAT+CGG	0.473971	7:-52573771	None:intergenic
ATATATCTAAAGACTCCAAA+TGG	0.494837	7:+52573230	MsaT037150.1:CDS
CAGAATATACCACGTATGTT+CGG	0.512344	7:+52574152	MsaT037150.1:intron
CATGCTGGCAGAGAGTCCAA+AGG	0.714363	7:+52573575	MsaT037150.1:CDS
CCAAAGAGTTGCAGCTAAAA+AGG	0.311285	7:+52573436	MsaT037150.1:CDS
CCACGTGAAATAGGAAGCAA+TGG	0.577300	7:+52573509	MsaT037150.1:CDS
CCATTGCTTCCTATTTCACG+TGG	0.606111	7:-52573509	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	52572259	52574564	52572259	ID=MsaG037150
Chr7	mRNA	52572259	52574564	52572259	ID=MsaT037150.1;Parent=MsaG037150
Chr7	exon	52572259	52572339	52572259	ID=MsaT037150.1.exon1;Parent=MsaT037150.1
Chr7	CDS	52572259	52572339	52572259	ID=cds.MsaT037150.1;Parent=MsaT037150.1
Chr7	exon	52573179	52573596	52573179	ID=MsaT037150.1.exon2;Parent=MsaT037150.1
Chr7	CDS	52573179	52573596	52573179	ID=cds.MsaT037150.1;Parent=MsaT037150.1
Chr7	exon	52573662	52573783	52573662	ID=MsaT037150.1.exon3;Parent=MsaT037150.1
Chr7	CDS	52573662	52573783	52573662	ID=cds.MsaT037150.1;Parent=MsaT037150.1
Chr7	exon	52574155	52574173	52574155	ID=MsaT037150.1.exon4;Parent=MsaT037150.1
Chr7	CDS	52574155	52574173	52574155	ID=cds.MsaT037150.1;Parent=MsaT037150.1
Chr7	exon	52574527	52574564	52574527	ID=MsaT037150.1.exon5;Parent=MsaT037150.1
Chr7	CDS	52574527	52574564	52574527	ID=cds.MsaT037150.1;Parent=MsaT037150.1

Gene Sequence

>MsaT037150.1

ATGGCTAGTGAAACTAATGAGTTGAAGCCAATCCACTTTTTCAAGATAATACTTGCTCAAAATCTTCATGAAGGAAAGCTTATGATGCCAAGAAAGTTTGTGGAGAAATATGGAAAAGGTTTATCAAATGCTATATATCTAAAGACTCCAAATGGTGCAAAATGGAAATTAAATTTGGTAAAAAGTGATGGCAAGGTATGGTTTGAAAAAGGTTGGAAAGAATTTGCAGATCATCACTCTCTAGCTGATGGCCATCTTCTGCTGTTCAAATATCTAAGAAGTTCTCGTTTTCTTCTGCGCATCTTTGAAAAGAGTGCCTTAGAGATAAATTATCCATTCCAAAGAGTTGCAGCTAAAAAGGTCTCCAATGGTCAAAAGAGAAAAACTAACTCCTCTTTTGAATTCCATCAACCACGTGAAATAGGAAGCAATGGTTGTGTTGAAGTTGAGAAATTGCCAAAGGTAGCAACTTTGCATCATGCTGGCAGAGAGTCCAAAGGGAAACAAGTGCTTACTGCTAAGAGAGTAACAGCTCTTGAAAGAGCACAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGCGTGCATCATACGTGGAACACCGATTTCTTATGAATATACCACGTATGTTCGACTTTTCCCAAGTGAAAGAAGAAGCTTCTCAAGGATAA

Protein sequence

>MsaT037150.1

MASETNELKPIHFFKIILAQNLHEGKLMMPRKFVEKYGKGLSNAIYLKTPNGAKWKLNLVKSDGKVWFEKGWKEFADHHSLADGHLLLFKYLRSSRFLLRIFEKSALEINYPFQRVAAKKVSNGQKRKTNSSFEFHQPREIGSNGCVEVEKLPKVATLHHAGRESKGKQVLTAKRVTALERAQSFKTCNPSFVVVMRASYVEHRFLMNIPRMFDFSQVKEEASQG*