AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG037156


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG037156 MtrunA17_Chr7g0233531 80.913 241 30 1 28 268 1 225 2.13e-136 387
MsaG037156 MtrunA17_Chr7g0233561 68.148 270 71 3 1 263 6 267 7.78e-123 354
MsaG037156 MtrunA17_Chr3g0131891 65.625 256 77 2 1 255 7 252 6.46e-118 342
MsaG037156 MtrunA17_Chr7g0233541 62.055 253 62 4 28 263 1 236 1.28e-101 299
MsaG037156 MtrunA17_Chr7g0233521 62.979 235 57 7 28 255 1 212 1.11e-89 268
MsaG037156 MtrunA17_Chr7g0233571 55.204 221 81 5 7 217 4 216 1.61e-75 230
MsaG037156 MtrunA17_Chr8g0390841 33.858 254 146 7 11 250 37 282 2.38e-35 133
MsaG037156 MtrunA17_Chr3g0103191 33.333 213 116 5 10 216 9 201 3.27e-33 122
MsaG037156 MtrunA17_Chr1g0163071 31.727 249 144 6 28 255 1 244 1.16e-31 119
MsaG037156 MtrunA17_Chr5g0419201 35.976 164 100 2 13 173 16 177 1.75e-29 110
MsaG037156 MtrunA17_Chr1g0208771 32.500 240 138 8 29 252 13 244 4.71e-29 115
MsaG037156 MtrunA17_Chr3g0103181 33.198 247 122 9 10 246 9 222 1.16e-28 110
MsaG037156 MtrunA17_Chr3g0103151 49.038 104 51 1 10 113 9 110 1.78e-28 107
MsaG037156 MtrunA17_Chr1g0163231 29.333 225 136 6 10 234 6 207 5.79e-25 101
MsaG037156 MtrunA17_Chr1g0163261 31.933 238 143 7 10 246 6 225 1.67e-23 97.4
MsaG037156 MtrunA17_Chr6g0467351 37.349 166 84 4 11 168 13 166 2.21e-22 93.2
MsaG037156 MtrunA17_Chr1g0171611 29.958 237 129 7 10 244 6 207 2.32e-21 91.7
MsaG037156 MtrunA17_Chr1g0162441 41.414 99 58 0 13 111 7 105 3.34e-21 92.8
MsaG037156 MtrunA17_Chr3g0103171 28.866 194 114 4 29 216 6 181 1.19e-20 89.0
MsaG037156 MtrunA17_Chr1g0163181 30.317 221 137 7 22 234 14 225 7.08e-20 89.0
MsaG037156 MtrunA17_Chr4g0033961 38.095 105 63 1 13 115 6 110 9.47e-20 88.6
MsaG037156 MtrunA17_Chr4g0067431 39.669 121 72 1 11 130 13 133 1.75e-19 87.0
MsaG037156 MtrunA17_Chr1g0163101 36.923 130 77 3 8 135 12 138 4.41e-19 82.8
MsaG037156 MtrunA17_Chr1g0154161 26.293 232 142 4 11 233 28 239 3.50e-18 83.2
MsaG037156 MtrunA17_Chr3g0077411 38.095 105 64 1 11 114 260 364 4.82e-18 84.0
MsaG037156 MtrunA17_Chr3g0077411 32.673 101 68 0 12 112 24 124 1.59e-16 79.7
MsaG037156 MtrunA17_Chr3g0077461 39.640 111 65 1 4 114 230 338 7.90e-18 83.2
MsaG037156 MtrunA17_Chr3g0077461 29.907 107 74 1 29 134 23 129 3.04e-14 72.8
MsaG037156 MtrunA17_Chr1g0163251 29.555 247 148 8 22 263 14 239 3.24e-17 81.3
MsaG037156 MtrunA17_Chr1g0162411 38.384 99 59 1 13 111 7 103 1.79e-16 79.3
MsaG037156 MtrunA17_Chr1g0163141 40.594 101 52 3 27 127 9 101 2.07e-16 75.9
MsaG037156 MtrunA17_Chr1g0154131 26.744 258 169 6 11 261 182 426 2.25e-16 79.0
MsaG037156 MtrunA17_Chr1g0154131 27.737 137 83 2 11 132 24 159 8.61e-12 65.5
MsaG037156 MtrunA17_Chr1g0163221 26.923 260 175 6 7 263 5 252 4.18e-16 77.8
MsaG037156 MtrunA17_Chr3g0077381 32.203 118 71 2 27 144 34 142 4.76e-16 77.8
MsaG037156 MtrunA17_Chr3g0077381 29.452 146 90 2 12 156 246 379 1.45e-13 70.5
MsaG037156 MtrunA17_Chr1g0163121 42.708 96 52 2 27 122 9 101 5.13e-16 73.6
MsaG037156 MtrunA17_Chr3g0077451 31.356 118 66 2 27 141 10 115 5.54e-16 75.9
MsaG037156 MtrunA17_Chr1g0163131 37.069 116 70 2 7 122 12 124 1.25e-15 75.9
MsaG037156 MtrunA17_Chr4g0009491 30.137 146 89 2 12 156 224 357 1.32e-15 76.6
MsaG037156 MtrunA17_Chr4g0009491 30.579 121 83 1 27 146 11 131 8.16e-15 74.3
MsaG037156 MtrunA17_Chr1g0163201 30.622 209 132 7 29 234 19 217 1.62e-15 76.3
MsaG037156 MtrunA17_Chr1g0163241 37.000 100 61 1 29 128 23 120 2.07e-15 72.4
MsaG037156 MtrunA17_Chr1g0163061 36.364 121 76 1 11 130 13 133 2.46e-15 74.3
MsaG037156 MtrunA17_Chr1g0163191 37.037 108 60 2 22 129 14 113 3.73e-15 71.6
MsaG037156 MtrunA17_Chr1g0154211 23.711 291 150 9 11 233 21 307 8.30e-15 73.9
MsaG037156 MtrunA17_Chr1g0154251 36.559 93 58 1 11 103 25 116 1.02e-14 73.9
MsaG037156 MtrunA17_Chr1g0154171 25.385 260 160 6 11 237 21 279 1.38e-14 73.2
MsaG037156 MtrunA17_Chr1g0154191 25.097 259 155 4 11 233 20 275 1.90e-14 72.8
MsaG037156 MtrunA17_Chr1g0154101 37.634 93 56 2 11 103 182 272 5.59e-14 72.4
MsaG037156 MtrunA17_Chr1g0154101 35.870 92 59 0 11 102 23 114 7.50e-14 72.0
MsaG037156 MtrunA17_Chr5g0429931 34.524 84 55 0 29 112 11 94 7.97e-14 69.7
MsaG037156 MtrunA17_Chr1g0154111 23.906 297 176 8 11 261 24 316 9.15e-14 71.2
MsaG037156 MtrunA17_Chr3g0077361 27.273 143 102 2 12 152 39 181 1.13e-13 70.9
MsaG037156 MtrunA17_Chr1g0154241 35.052 97 62 1 11 107 20 115 5.29e-13 67.8
MsaG037156 MtrunA17_Chr1g0154151 27.049 244 143 6 16 233 14 248 6.28e-13 68.2
MsaG037156 MtrunA17_Chr6g0476181 38.710 93 54 2 28 120 1 90 1.28e-12 64.7
MsaG037156 MtrunA17_Chr1g0154071 34.043 94 61 1 14 107 157 249 2.59e-12 67.0
MsaG037156 MtrunA17_Chr1g0154071 31.959 97 65 1 11 107 26 121 8.03e-12 65.5
MsaG037156 MtrunA17_Chr1g0163081 36.842 95 57 2 28 122 5 96 3.58e-12 63.2
MsaG037156 MtrunA17_Chr1g0162161 28.369 141 89 4 28 168 3 131 3.90e-12 63.2
MsaG037156 MtrunA17_Chr1g0154041 32.673 101 67 1 8 108 11 110 1.47e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG037156 AT3G18990.1 27.526 287 161 6 13 255 6 289 4.68e-25 102
MsaG037156 AT3G18990.2 28.571 287 158 8 13 255 6 289 3.23e-23 98.2
MsaG037156 AT4G01580.1 43.269 104 59 0 13 116 30 133 7.93e-23 93.6
MsaG037156 AT1G49475.1 40.517 116 68 1 13 128 34 148 1.36e-22 92.8
MsaG037156 AT3G18960.2 34.211 152 84 2 13 148 30 181 1.53e-21 90.1
MsaG037156 AT3G18960.1 34.211 152 84 2 13 148 30 181 2.49e-21 90.1
MsaG037156 AT3G18960.3 35.294 136 72 2 29 148 9 144 6.10e-18 80.1
MsaG037156 AT3G53310.1 33.333 102 63 2 3 104 5 101 5.78e-12 65.5
MsaG037156 AT5G66980.1 31.148 122 78 3 9 125 6 126 6.52e-11 62.8

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCTAACTCCTTTGAATT+TGG 0.175508 7:+52780169 MsaT037156.1:CDS
TGGAAAATGGAAATTAAATT+TGG 0.234349 7:+52779901 MsaT037156.1:CDS
AGAAAATTTGTGGAGAAATA+TGG 0.268462 7:+52779836 MsaT037156.1:CDS
GTCTTTAGACATGTTTCTTT+TGG 0.282527 7:-52779869 None:intergenic
AGACTCCAAATGGTGGAAAA+TGG 0.283126 7:+52779888 MsaT037156.1:CDS
AAGAAGCTACATAAGGATAA+AGG 0.305671 7:+52781208 MsaT037156.1:CDS
CAAGGAAATGAATCTCTAAA+TGG 0.329233 7:+52780118 MsaT037156.1:CDS
ATGTAGCTTCTTCTTTCATT+TGG 0.329258 7:-52781197 None:intergenic
AGTAGTAGTTGTGTTAAAGT+TGG 0.371498 7:+52780193 MsaT037156.1:CDS
AGGTGTTAAATGAAGGAGTT+TGG 0.387476 7:+52780878 MsaT037156.1:CDS
TGGTAATAGACACTTTGATT+TGG 0.391800 7:+52780828 MsaT037156.1:CDS
CAGAATATACCACGTATGTT+TGG 0.412403 7:+52780808 MsaT037156.1:intron
GATGATGCCAAGAAAATTTG+TGG 0.418421 7:+52779826 MsaT037156.1:intron
GTAGTAGTTGTGTTAAAGTT+GGG 0.429796 7:+52780194 MsaT037156.1:CDS
AGAAGCTACATAAGGATAAA+GGG 0.438433 7:+52781209 MsaT037156.1:CDS
AGATTCATTTCCTTGATCAA+TGG 0.441958 7:-52780110 None:intergenic
TGGCAAGGTATGGTTTGAAA+AGG 0.450397 7:+52779934 MsaT037156.1:CDS
ATGAAGGAGTTTGGCCTACA+AGG 0.459083 7:+52780887 MsaT037156.1:CDS
CATTAAGATCTAAAACTCCT+TGG 0.470934 7:-52781277 None:intergenic
CGCATGACAACAACAAATGA+TGG 0.473085 7:-52780453 None:intergenic
AAAGGCTTACAAGCTTTCCT+TGG 0.474678 7:-52779039 None:intergenic
TTTGATTTGGATAAGAAAAG+AGG 0.493087 7:+52780841 MsaT037156.1:CDS
ATGAAAGAAGAAGCTACATA+AGG 0.494645 7:+52781201 MsaT037156.1:CDS
CATGGCTAGTGAAATTTATG+AGG 0.497255 7:+52778970 None:intergenic
ACATGTCTAAAGACTCCAAA+TGG 0.505252 7:+52779878 MsaT037156.1:CDS
TTACAAGCTTTCCTTGGTGA+AGG 0.528265 7:-52779033 None:intergenic
AGGTATGGTTTGAAAAGGGT+TGG 0.528620 7:+52779939 MsaT037156.1:CDS
TTCCTGATAGAAAACCTTGT+AGG 0.540464 7:-52780901 None:intergenic
GGCAAGGTATGGTTTGAAAA+GGG 0.548981 7:+52779935 MsaT037156.1:CDS
ACTACTACTTCCAAATTCAA+AGG 0.556173 7:-52780179 None:intergenic
TAAGATCTAAAACTCCTTGG+TGG 0.557548 7:-52781274 None:intergenic
TGTTGAACATAGATTTCTGA+TGG 0.558556 7:+52780485 MsaT037156.1:CDS
ATATGTACCTCAAAATTGGA+AGG 0.569214 7:-52780025 None:intergenic
GATCTAAAACTCCTTGGTGG+TGG 0.569454 7:-52781271 None:intergenic
GAGCATCACTCTCTAGCTCA+TGG 0.577825 7:+52779974 MsaT037156.1:CDS
AAATCACAAAAGAAGTCCAA+AGG 0.633010 7:+52780217 MsaT037156.1:CDS
TGTCTAAAGACTCCAAATGG+TGG 0.636064 7:+52779881 MsaT037156.1:CDS
CTTGCTCAAAACCTTCACCA+AGG 0.698372 7:+52779022 MsaT037156.1:CDS
TCAAATCACTACCACCACCA+AGG 0.707386 7:+52781260 MsaT037156.1:CDS
TGTCTATTACCAAACATACG+TGG 0.737084 7:-52780817 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 52778971 52781307 52778971 ID=MsaG037156
Chr7 mRNA 52778971 52781307 52778971 ID=MsaT037156.1;Parent=MsaG037156
Chr7 exon 52778971 52779051 52778971 ID=MsaT037156.1.exon1;Parent=MsaT037156.1
Chr7 CDS 52778971 52779051 52778971 ID=cds.MsaT037156.1;Parent=MsaT037156.1
Chr7 exon 52779827 52780295 52779827 ID=MsaT037156.1.exon2;Parent=MsaT037156.1
Chr7 CDS 52779827 52780295 52779827 ID=cds.MsaT037156.1;Parent=MsaT037156.1
Chr7 exon 52780391 52780506 52780391 ID=MsaT037156.1.exon3;Parent=MsaT037156.1
Chr7 CDS 52780391 52780506 52780391 ID=cds.MsaT037156.1;Parent=MsaT037156.1
Chr7 exon 52780811 52780908 52780811 ID=MsaT037156.1.exon4;Parent=MsaT037156.1
Chr7 CDS 52780811 52780908 52780811 ID=cds.MsaT037156.1;Parent=MsaT037156.1
Chr7 exon 52781190 52781307 52781190 ID=MsaT037156.1.exon5;Parent=MsaT037156.1
Chr7 CDS 52781190 52781307 52781190 ID=cds.MsaT037156.1;Parent=MsaT037156.1
Gene Sequence

>MsaT037156.1

ATGGCTAGTGAAATTTATGAGGTGAAGCCAATTCACTTTTTCAAGATCATACTTGCTCAAAACCTTCACCAAGGAAAGCTTATGATGCCAAGAAAATTTGTGGAGAAATATGGAAAAAGTCTACCAAAAGAAACATGTCTAAAGACTCCAAATGGTGGAAAATGGAAATTAAATTTGGTAAAAAGTGATGGCAAGGTATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGCATCACTCTCTAGCTCATGGCCATCTTCTGCTTTTTAGATATGAAAAACCTTCCAATTTTGAGGTACATATTTTTGAAAAGAGTGCGTTGGAGACAAATTACCCTACCAAAAGAGTTGAAGATAAAAAGATCTCCATTGATCAAGGAAATGAATCTCTAAATGGTGAAAATTGTAGAGCAGCTCAAAAGAGAAAAGCTAACTCCTTTGAATTTGGAAGTAGTAGTTGTGTTAAAGTTGGGAAATCACAAAAGAAGTCCAAAGGTAAAAAAAAAAAAAGGATTTTACGTCTTCAATGTCTCATGAAAGCTTCACAAGTATTGATTACTGCTGCTGAAAAAGTTACAACTCTTGAAAGAGCAGAATCTTTCAAAATAATAAATCCATCATTTGTTGTTGTCATGCGTGCATCATATGTTGAACATAGATTTCTGATGAATATACCACGTATGTTTGGTAATAGACACTTTGATTTGGATAAGAAAAGAGGAGATATTTATTTTCAGGTGTTAAATGAAGGAGTTTGGCCTACAAGAATCTCTCCAAATGAAAGAAGAAGCTACATAAGGATAAAGGGAATCGTTCTCATTACTGCAAATCTACAATCAAATCACTACCACCACCAAGGAGTTTTAGATCTTAATGAAGCTTAA

Protein sequence

>MsaT037156.1

MASEIYEVKPIHFFKIILAQNLHQGKLMMPRKFVEKYGKSLPKETCLKTPNGGKWKLNLVKSDGKVWFEKGWKEFAEHHSLAHGHLLLFRYEKPSNFEVHIFEKSALETNYPTKRVEDKKISIDQGNESLNGENCRAAQKRKANSFEFGSSSCVKVGKSQKKSKGKKKKRILRLQCLMKASQVLITAAEKVTTLERAESFKIINPSFVVVMRASYVEHRFLMNIPRMFGNRHFDLDKKRGDIYFQVLNEGVWPTRISPNERRSYIRIKGIVLITANLQSNHYHHQGVLDLNEA*