AlfalfaGEDB | MsaG037162

M. sativa ssp. caerulea / MsaG037162

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037162	AES78893.2	90.286	175	17	0	1	175	1	175	6.57e-113	334

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037162	sp\|Q8L3W1\|VRN1_ARATH	41.414	99	58	0	13	111	6	104	4.90e-21	91.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037162	tr\|G7KVW6\|G7KVW6_MEDTR	90.286	175	17	0	1	175	1	175	3.14e-113	334

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037162	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037162	MtrunA17_Chr7g0233561	90.286	175	17	0	1	175	6	180	9.40e-117	334
MsaG037162	MtrunA17_Chr3g0131891	66.857	175	52	1	1	175	7	175	2.78e-80	241
MsaG037162	MtrunA17_Chr7g0233571	63.253	166	58	1	7	169	4	169	1.45e-68	208
MsaG037162	MtrunA17_Chr7g0233531	77.778	135	23	2	28	162	1	128	5.65e-68	208
MsaG037162	MtrunA17_Chr7g0233541	68.874	151	43	3	28	175	1	150	1.63e-67	207
MsaG037162	MtrunA17_Chr7g0233521	65.493	142	35	1	28	169	1	128	8.20e-59	185
MsaG037162	MtrunA17_Chr3g0103151	53.398	103	46	1	10	112	9	109	1.65e-34	119
MsaG037162	MtrunA17_Chr3g0103191	51.456	103	48	1	10	112	9	109	3.36e-33	118
MsaG037162	MtrunA17_Chr8g0390841	38.889	162	90	3	11	169	37	192	8.66e-33	122
MsaG037162	MtrunA17_Chr3g0103181	50.485	103	49	1	10	112	9	109	1.30e-30	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037162	AT3G18990.1	41.414	99	58	0	13	111	6	104	4.98e-22	91.3
MsaG037162	AT3G18990.2	41.414	99	58	0	13	111	6	104	6.95e-22	91.3
MsaG037162	AT1G49475.1	40.000	105	62	1	13	117	34	137	9.84e-22	87.8
MsaG037162	AT4G01580.1	39.423	104	63	0	13	116	30	133	4.74e-21	85.9
MsaG037162	AT3G18960.2	39.423	104	63	0	13	116	30	133	1.46e-20	84.7
MsaG037162	AT3G18960.1	39.423	104	63	0	13	116	30	133	1.70e-20	84.7
MsaG037162	AT3G18960.3	43.182	88	50	0	29	116	9	96	5.95e-18	77.4
MsaG037162	AT4G33280.2	35.000	100	61	2	12	107	19	118	2.60e-12	63.9
MsaG037162	AT4G33280.3	35.000	100	61	2	12	107	19	118	3.56e-12	64.3
MsaG037162	AT4G33280.1	35.000	100	61	2	12	107	19	118	4.26e-12	63.9

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Find 29 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGGAAAATCGCAGA+AGG	0.630701	7:+52868471	MsaT037162.1:CDS
AAAGATTTGTACCTCAAATT+TGG	0.180864	7:-52868272	None:intergenic
AAAGGCTTACAAGGTTTCCT+TGG	0.416023	7:-52867421	None:intergenic
AAATTTGAGGTACAAATCTT+TGG	0.253897	7:+52868274	MsaT037162.1:CDS
AATCTTTGGAAAGAGTGCTT+TGG	0.429279	7:+52868288	MsaT037162.1:CDS
ACATTGTCGATGAAATTCAA+AGG	0.588513	7:-52868425	None:intergenic
AGACTCCAAATGGTGCAAAA+TGG	0.357064	7:+52868131	MsaT037162.1:CDS
AGATATGGTTTGAGAAGGGT+TGG	0.481735	7:+52868182	MsaT037162.1:CDS
AGCAGTAGTTGTGTAAAATT+TGG	0.230825	7:+52868457	MsaT037162.1:CDS
AGGTTTATTTCCTTGACCAT+TGG	0.507461	7:-52868353	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	52867353	52868818	52867353	ID=MsaG037162
Chr7	mRNA	52867353	52868818	52867353	ID=MsaT037162.1;Parent=MsaG037162
Chr7	exon	52867353	52867433	52867353	ID=MsaT037162.1.exon1;Parent=MsaT037162.1
Chr7	CDS	52867353	52867433	52867353	ID=cds.MsaT037162.1;Parent=MsaT037162.1
Chr7	exon	52868070	52868525	52868070	ID=MsaT037162.1.exon2;Parent=MsaT037162.1
Chr7	CDS	52868070	52868525	52868070	ID=cds.MsaT037162.1;Parent=MsaT037162.1
Chr7	exon	52868807	52868818	52868807	ID=MsaT037162.1.exon3;Parent=MsaT037162.1
Chr7	CDS	52868807	52868818	52868807	ID=cds.MsaT037162.1;Parent=MsaT037162.1

Gene Sequence

>MsaT037162.1

ATGGCTAGTGAAATTGCTGAGGTGAAGCCAATCCACTTTTTCAAGATCATAGTTACTCAAAACCTTCTCCAAGGAAACCTTATGATGCCAAGAAAGTTTGTGGAAAAATATGGAAAAGGTCTACCAAAAGCTATATGTCTAGAGACTCCAAATGGTGCAAAATGGAAATTAAATTTGGCAATGAGTGATGGCAAGATATGGTTTGAGAAGGGTTGGAAACAATTTGCAGAGCATCACTCTCTAGGTCATGGCCATCTTCTGCTTTTTAGATATGAAAAAACTTCCAAATTTGAGGTACAAATCTTTGGAAAGAGTGCTTTGGAGATAGACTACTCTTTCAAAAAAGTTGAATATAAAAAGTTCTCCAATGGTCAAGGAAATAAACCTCCAAATGGTGAAAATTGTAGAGCAGCTCAAAAGAGGAAAGCTAACTCCTCCTTTGAATTTCATCGACAATGTGAAATTGGAAGCAGTAGTTGTGTAAAATTTGGAAAATCGCAGAAGGTGGATGTGCATCAAATTGATATTCGTCCAAAGGAAAACAAGTGA

Protein sequence

>MsaT037162.1

MASEIAEVKPIHFFKIIVTQNLLQGNLMMPRKFVEKYGKGLPKAICLETPNGAKWKLNLAMSDGKIWFEKGWKQFAEHHSLGHGHLLLFRYEKTSKFEVQIFGKSALEIDYSFKKVEYKKFSNGQGNKPPNGENCRAAQKRKANSSFEFHRQCEIGSSSCVKFGKSQKVDVHQIDIRPKENK*