AlfalfaGEDB | MsaG037238

M. sativa ssp. caerulea / MsaG037238

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037238	AET00651.1	73.718	156	7	1	1	122	2	157	3.34e-74	229

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037238	sp\|Q6ICW6\|WNK11_ARATH	65.789	152	18	1	5	122	10	161	3.76e-63	197

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037238	tr\|G7K4D5\|G7K4D5_MEDTR	73.718	156	7	1	1	122	2	157	1.60e-74	229

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037238	MtrunA17_Chr5g0445271	73.718	156	7	1	1	122	2	157	5.65e-77	229
MsaG037238	MtrunA17_Chr3g0101091	63.462	156	23	1	1	122	1	156	6.24e-66	201
MsaG037238	MtrunA17_Chr3g0101081	63.462	156	23	1	1	122	1	156	6.24e-66	201
MsaG037238	MtrunA17_Chr3g0101111	63.462	156	23	1	1	122	1	156	6.81e-66	201
MsaG037238	MtrunA17_Chr7g0225201	64.103	156	22	1	1	122	2	157	8.93e-66	201
MsaG037238	MtrunA17_Chr3g0132681	61.146	157	26	2	1	122	1	157	1.38e-60	187
MsaG037238	MtrunA17_Chr5g0447731	59.184	147	26	1	10	122	7	153	2.09e-56	177
MsaG037238	MtrunA17_Chr3g0116811	50.323	155	43	1	1	121	1	155	1.76e-43	149
MsaG037238	MtrunA17_Chr7g0273851	47.260	146	43	1	10	121	8	153	7.17e-39	137
MsaG037238	MtrunA17_Chr1g0205471	47.059	153	46	2	3	121	2	153	7.02e-38	135
MsaG037238	MtrunA17_Chr1g0190951	47.260	146	43	1	10	121	8	153	1.16e-37	134
MsaG037238	MtrunA17_Chr4g0013051	46.809	141	41	1	15	121	13	153	2.12e-37	133
MsaG037238	MtrunA17_Chr7g0244601	46.000	150	47	1	6	121	8	157	5.09e-37	132
MsaG037238	MtrunA17_Chr8g0346511	48.592	142	39	1	14	121	26	167	1.18e-36	131
MsaG037238	MtrunA17_Chr3g0119911	44.218	147	48	1	9	121	3	149	2.91e-36	130
MsaG037238	MtrunA17_Chr5g0432541	45.517	145	45	1	11	121	12	156	3.37e-36	129
MsaG037238	MtrunA17_Chr3g0129771	45.324	139	42	1	17	121	24	162	4.47e-33	121
MsaG037238	MtrunA17_Chr6g0455931	45.390	141	43	1	15	121	18	158	1.31e-32	119
MsaG037238	MtrunA17_Chr8g0384001	43.478	138	44	1	18	121	20	157	1.18e-31	117

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037238	AT5G55560.1	65.789	152	18	1	5	122	10	161	3.83e-64	197
MsaG037238	AT3G48260.1	53.521	142	32	1	14	121	10	151	1.01e-41	144
MsaG037238	AT3G51630.1	47.651	149	44	1	7	121	6	154	7.20e-40	139
MsaG037238	AT3G51630.2	47.651	149	44	1	7	121	6	154	7.20e-40	139
MsaG037238	AT5G28080.2	47.020	151	46	1	5	121	4	154	9.01e-40	139
MsaG037238	AT3G04910.1	47.682	151	45	1	5	121	3	153	4.97e-39	138
MsaG037238	AT3G22420.1	46.897	145	43	1	11	121	9	153	1.85e-37	133
MsaG037238	AT3G22420.5	46.897	145	43	1	11	121	9	153	2.06e-37	133
MsaG037238	AT5G41990.1	48.571	140	38	1	16	121	19	158	2.24e-37	133
MsaG037238	AT3G22420.2	46.897	145	43	1	11	121	9	153	2.31e-37	133
MsaG037238	AT3G22420.6	46.897	145	43	1	11	121	9	153	2.40e-37	133
MsaG037238	AT3G22420.4	46.897	145	43	1	11	121	80	224	2.41e-37	133
MsaG037238	AT3G22420.3	46.897	145	43	1	11	121	80	224	2.49e-37	133
MsaG037238	AT3G18750.6	48.551	138	37	1	18	121	20	157	1.75e-35	127
MsaG037238	AT3G18750.2	48.551	138	37	1	18	121	20	157	1.75e-35	127
MsaG037238	AT3G18750.1	48.551	138	37	1	18	121	20	157	3.38e-35	127
MsaG037238	AT3G18750.3	48.551	138	37	1	18	121	20	157	3.38e-35	127
MsaG037238	AT3G18750.5	48.551	138	37	1	18	121	20	157	3.38e-35	127
MsaG037238	AT1G49160.2	45.652	138	41	1	18	121	20	157	3.38e-34	124
MsaG037238	AT1G64630.1	45.000	140	43	1	16	121	6	145	7.66e-34	123
MsaG037238	AT5G58350.1	44.286	140	44	1	16	121	9	148	2.04e-33	122
MsaG037238	AT3G18750.4	46.512	129	35	1	27	121	11	139	3.01e-30	113
MsaG037238	AT1G49160.5	34.595	185	40	2	18	121	20	204	1.95e-26	102
MsaG037238	AT3G04910.2	42.857	119	34	1	37	121	12	130	2.00e-26	102
MsaG037238	AT1G49160.3	34.595	185	40	2	18	121	20	204	3.26e-26	102
MsaG037238	AT1G49160.1	42.609	115	32	1	41	121	25	139	9.08e-25	98.2
MsaG037238	AT5G28080.8	38.462	130	51	5	5	121	4	117	1.26e-19	83.6
MsaG037238	AT3G48260.2	66.071	56	17	1	68	121	1	56	9.89e-18	77.8
MsaG037238	AT5G28080.4	65.217	46	16	0	76	121	23	68	5.71e-16	72.8
MsaG037238	AT5G28080.3	65.217	46	16	0	76	121	23	68	5.71e-16	72.8
MsaG037238	AT5G28080.5	65.217	46	16	0	76	121	23	68	5.71e-16	72.8
MsaG037238	AT5G28080.6	65.217	46	16	0	76	121	23	68	5.71e-16	72.8
MsaG037238	AT5G28080.7	65.217	46	16	0	76	121	23	68	5.71e-16	72.8

Find 24 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTAGATATCTCGAACTATT+AGG	0.324894	7:+54284966	MsaT037238.1:CDS
CGAGTCTTTGTCGGATGAAC+TGG	0.338955	7:-54284907	None:intergenic
CTACGAAGGCATTGAAGAAA+TGG	0.389902	7:+54285264	MsaT037238.1:CDS
ACTGATCCAACTGGTAGATA+TGG	0.411689	7:+54284945	MsaT037238.1:CDS
CAAAGACTCGGAGGCATTTG+CGG	0.448101	7:+54284920	MsaT037238.1:CDS
AAATGCCTCCGAGTCTTTGT+CGG	0.474803	7:-54284916	None:intergenic
AGAAGTTCTTTAACTTCACT+TGG	0.512640	7:-54285055	None:intergenic
TAAAGCCTCTCTATCATAGC+AGG	0.530301	7:-54285086	None:intergenic
GCGGGAATTTGAGAGAGTAT+AGG	0.534123	7:+54285222	MsaT037238.1:intron
AAGAAGGAATTGAGGTAGCA+TGG	0.534488	7:+54285030	MsaT037238.1:CDS
TTTGCGGAAACTGATCCAAC+TGG	0.537245	7:+54284936	MsaT037238.1:CDS
TATCTACCATATCTACCAGT+TGG	0.545948	7:-54284951	None:intergenic
CGTGCATTCGATCAAGAAGA+AGG	0.547354	7:+54285014	MsaT037238.1:CDS
CTTCTTCTTGATCGAATGCA+CGG	0.570276	7:-54285013	None:intergenic
CAGTTCATCCGACAAAGACT+CGG	0.590927	7:+54284908	MsaT037238.1:CDS
AGAGGCTTTATTCTGAAGTG+AGG	0.595040	7:+54285099	MsaT037238.1:CDS
CGATCAAGAAGAAGGAATTG+AGG	0.599987	7:+54285022	MsaT037238.1:CDS
TATCTCGAACTATTAGGATG+TGG	0.600519	7:+54284972	MsaT037238.1:CDS
ATGAACCTGCTATGATAGAG+AGG	0.603501	7:+54285081	MsaT037238.1:CDS
AGGCATTGAAGAAATGGTCA+AGG	0.623333	7:+54285270	MsaT037238.1:CDS
AGATCTCTATGAATGATGCA+AGG	0.646829	7:-54285332	None:intergenic
GATGAACTGGAGTTAATACT+CGG	0.646884	7:-54284894	None:intergenic
ACATAGACATGTTTCTACGA+AGG	0.672498	7:+54285250	MsaT037238.1:CDS
TTCATCCGACAAAGACTCGG+AGG	0.700354	7:+54284911	MsaT037238.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	54284891	54285367	54284891	ID=MsaG037238
Chr7	mRNA	54284891	54285367	54284891	ID=MsaT037238.1;Parent=MsaG037238
Chr7	exon	54284891	54285120	54284891	ID=MsaT037238.1.exon1;Parent=MsaT037238.1
Chr7	CDS	54284891	54285120	54284891	ID=cds.MsaT037238.1;Parent=MsaT037238.1
Chr7	exon	54285223	54285367	54285223	ID=MsaT037238.1.exon2;Parent=MsaT037238.1
Chr7	CDS	54285223	54285367	54285223	ID=cds.MsaT037238.1;Parent=MsaT037238.1

Gene Sequence	>MsaT037238.1 ATGCCGAGTATTAACTCCAGTTCATCCGACAAAGACTCGGAGGCATTTGCGGAAACTGATCCAACTGGTAGATATGGTAGATATCTCGAACTATTAGGATGTGGTGCTGTGAAGAAAGTGTACCGTGCATTCGATCAAGAAGAAGGAATTGAGGTAGCATGGAACCAAGTGAAGTTAAAGAACTTCTATGATGAACCTGCTATGATAGAGAGGCTTTATTCTGAAGTGAGCGGGAATTTGAGAGAGTATAGGAAGAAACATAGACATGTTTCTACGAAGGCATTGAAGAAATGGTCAAGGCAGATTTTGAAGGGGTTGAATTATTTGCACACTCATGAGCCTTGCATCATTCATAGAGATCTGAATTTGCAGTAA
Protein sequence	>MsaT037238.1 MPSINSSSSDKDSEAFAETDPTGRYGRYLELLGCGAVKKVYRAFDQEEGIEVAWNQVKLKNFYDEPAMIERLYSEVSGNLREYRKKHRHVSTKALKKWSRQILKGLNYLHTHEPCIIHRDLNLQ*