AlfalfaGEDB | MsaG037255

M. sativa ssp. caerulea / MsaG037255

KEGG: K11420
GO: -
PFAM: PF05033.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037255	AES79015.2	84.480	567	30	4	1	520	1	556	0.0	962

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037255	sp\|Q8GZB6\|SUVH4_ARATH	55.060	336	146	4	189	520	290	624	9.30e-127	386

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037255	tr\|G7KY38\|G7KY38_MEDTR	84.480	567	30	4	1	520	1	556	0.0	962

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037255	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG037255	0.886160	9.418797e-72	2.284265e-68
MsaG000081	MsaG037255	0.867319	3.007396e-65	3.119893e-62
MsaG000234	MsaG037255	0.904009	4.497908e-79	2.918074e-75
MsaG000364	MsaG037255	0.923846	4.053722e-89	1.016764e-84
MsaG000379	MsaG037255	0.859478	7.890740e-63	6.014522e-60
MsaG000479	MsaG037255	0.852541	8.273129e-61	4.897465e-58
MsaG000520	MsaG037255	0.947449	2.061526e-105	3.745492e-100
MsaG000553	MsaG037255	0.823611	2.230065e-53	5.401811e-51
MsaG000842	MsaG037255	0.874085	1.835215e-67	2.535472e-64
MsaG001223	MsaG037255	0.822284	4.530368e-53	1.058647e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037255	MtrunA17_Chr7g0234361	77.746	355	22	3	1	309	1	344	0.0	531
MsaG037255	MtrunA17_Chr6g0476121	55.655	336	145	3	189	520	308	643	3.71e-126	382
MsaG037255	MtrunA17_Chr7g0252211	55.655	336	145	3	189	520	422	757	1.51e-125	384
MsaG037255	MtrunA17_Chr6g0476111	55.357	336	146	3	189	520	359	694	3.23e-125	382
MsaG037255	MtrunA17_Chr5g0399801	44.781	297	136	9	234	520	811	1089	7.57e-68	236
MsaG037255	MtrunA17_Chr4g0003501	41.615	322	170	8	202	520	649	955	1.43e-66	231
MsaG037255	MtrunA17_Chr4g0003511	43.197	294	153	9	230	520	770	1052	2.17e-66	232
MsaG037255	MtrunA17_Chr7g0255181	30.514	331	201	6	191	516	395	701	2.13e-46	172
MsaG037255	MtrunA17_Chr7g0232841	34.983	303	151	10	230	520	260	528	7.34e-46	168
MsaG037255	MtrunA17_Chr7g0232811	34.106	302	154	9	230	520	272	539	9.10e-45	165

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037255	AT5G13960.2	55.060	336	146	4	189	520	156	490	1.74e-128	384
MsaG037255	AT5G13960.1	55.060	336	146	4	189	520	290	624	9.46e-128	386
MsaG037255	AT2G22740.2	38.941	321	154	9	219	520	493	790	4.77e-59	209
MsaG037255	AT2G22740.1	38.941	321	154	9	219	520	493	790	4.77e-59	209
MsaG037255	AT2G35160.5	37.267	322	161	9	201	520	476	758	1.40e-58	207
MsaG037255	AT2G35160.2	37.267	322	161	9	201	520	512	794	2.92e-58	207
MsaG037255	AT2G35160.3	37.267	322	161	9	201	520	512	794	2.92e-58	207
MsaG037255	AT2G35160.1	37.267	322	161	9	201	520	512	794	2.92e-58	207
MsaG037255	AT2G35160.4	37.267	322	161	9	201	520	512	794	2.92e-58	207
MsaG037255	AT1G73100.1	31.008	387	247	9	135	516	294	665	2.75e-47	174

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Find 100 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCTTCAATGTCATTG+TGG	0.646249	7:-54927926	MsaT037255.1:CDS
AAGACATCGTGGTCGAATGT+GGG	0.613095	7:-54929574	MsaT037255.1:CDS
AAGAGGAATACCTGATAGGG+AGG	0.649275	7:+54928894	None:intergenic
AAGCCTAGATGTTTCTCTCA+AGG	0.570477	7:+54932326	None:intergenic
AAGCTCTTTCTTCTTCTCCA+AGG	0.537121	7:-54930166	MsaT037255.1:intron
AAGGTTGGGCGGTAAGAACA+TGG	0.558115	7:-54929373	MsaT037255.1:CDS
AAGTTTGGTATCAACAACAA+AGG	0.612619	7:-54932577	MsaT037255.1:CDS
AATGATTCACTTGTCTTTGA+TGG	0.221527	7:-54932372	MsaT037255.1:CDS
AATGTAAAATGACCTCAAGT+CGG	0.632516	7:+54929492	None:intergenic
ACAAAGAGGAATACCTGATA+GGG	0.490411	7:+54928891	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	54927895	54932763	54927895	ID=MsaG037255
Chr7	mRNA	54927895	54932763	54927895	ID=MsaT037255.1;Parent=MsaG037255
Chr7	exon	54927895	54928008	54927895	ID=MsaT037255.1.exon10;Parent=MsaT037255.1
Chr7	CDS	54927895	54928008	54927895	ID=cds.MsaT037255.1;Parent=MsaT037255.1
Chr7	exon	54928905	54929138	54928905	ID=MsaT037255.1.exon9;Parent=MsaT037255.1
Chr7	CDS	54928905	54929138	54928905	ID=cds.MsaT037255.1;Parent=MsaT037255.1
Chr7	exon	54929232	54929414	54929232	ID=MsaT037255.1.exon8;Parent=MsaT037255.1
Chr7	CDS	54929232	54929414	54929232	ID=cds.MsaT037255.1;Parent=MsaT037255.1
Chr7	exon	54929505	54929610	54929505	ID=MsaT037255.1.exon7;Parent=MsaT037255.1
Chr7	CDS	54929505	54929610	54929505	ID=cds.MsaT037255.1;Parent=MsaT037255.1
Chr7	exon	54929735	54929885	54929735	ID=MsaT037255.1.exon6;Parent=MsaT037255.1
Chr7	CDS	54929735	54929885	54929735	ID=cds.MsaT037255.1;Parent=MsaT037255.1
Chr7	exon	54929977	54930065	54929977	ID=MsaT037255.1.exon5;Parent=MsaT037255.1
Chr7	CDS	54929977	54930065	54929977	ID=cds.MsaT037255.1;Parent=MsaT037255.1
Chr7	exon	54930167	54930216	54930167	ID=MsaT037255.1.exon4;Parent=MsaT037255.1
Chr7	CDS	54930167	54930216	54930167	ID=cds.MsaT037255.1;Parent=MsaT037255.1
Chr7	exon	54930843	54930944	54930843	ID=MsaT037255.1.exon3;Parent=MsaT037255.1
Chr7	CDS	54930843	54930944	54930843	ID=cds.MsaT037255.1;Parent=MsaT037255.1
Chr7	exon	54931483	54931554	54931483	ID=MsaT037255.1.exon2;Parent=MsaT037255.1
Chr7	CDS	54931483	54931554	54931483	ID=cds.MsaT037255.1;Parent=MsaT037255.1
Chr7	exon	54932302	54932763	54932302	ID=MsaT037255.1.exon1;Parent=MsaT037255.1
Chr7	CDS	54932302	54932763	54932302	ID=cds.MsaT037255.1;Parent=MsaT037255.1

Gene Sequence

>MsaT037255.1

ATGGAGGCTACTAAGAGTTCTGAAAATGAGGCTATGATGGTACCAACAAGAGTGAGTTCAAGAATCCAGAATCACTCTAAGATTCAATATAACATTTACAACAGCAGCGGCGACAAAGTTTTTGCCCAACATGTTGAAAATATTGAACTTGGAAGTAAAGAGGAAAGTTTGGTATCAACAACAAAGGTTTGTTCACAACTTCAAAATCGAAACGAAATTCCAGATGATATTAACCATAAGAGAGGCATGATCAGTATTGAAGACAATATTGTCGAGAAGAGAACCAAGCTCAACTCTTTGAGAAGAAAACCTTGCTCTCATTCAAGTTCAAGAAGTGGTTCAACAATCTCTCGTTCAAAATCAACAAGTAATGATTCACTTGTCTTTGATGGACTTGACTTTAGAGGCATTTTGTCCTTGAGAGAAACATCTAGGCTTGCCAATCTTCGTCTCCTTGCTAAGGAAGAGAAGAATCAAAGCAAGAATCGACACAAGATAGGGAAAAATATTGCGACACTTTTGAGTGCAAGCAATGTAGAGAAAAATGGCATTGATAACGAATACGTTCCTGGAATCACTACATCGAAGTATCTGATAAATAAGCTTCGGGAAATTGCTAAAATGGGAACATACAAGGTTCATTTAATGGAAGGACAAGTCTCTAAAGCTCTTTCTTCTTCTCCAAGTTTGGTATGCAAGGACATTAGCAATGGACAAGAAGCTATCAGCATTATTGCAACCAATGATTTTGATGATCCTCCAGTTGCGCCCACAGGTTTTGAATACATTTCATCAAATAAAGTTTCACCAAGCATTGAGGTTCCATCTAGTGCTGCGGGATGCAATTGCAAGGGAAGTTGTAGAACCAAGAGATGTTCTTGTGCTAATCATAATGGCTCGAAGTTTTCATACAATAACATTGGCAGATTGATTGAGCCTCAAGACATCGTGGTCGAATGTGGGCCGCAATGTGGATGCGGACCTAAATGTGGAAACAAGGTTTCTCAACAGGGTTTAAGTTACCGACTTGAGGTTTATCGTACTCCCAAGAAAGGTTGGGCGGTAAGAACATGGGACTTTATCCCATCAGGTGCACCAGTTGTCGAGTATATCGGTGTACTTATTAGAGACGATGAGCTAGGAAGTGCCAACGGAAATGATTATATCTTCGATATTGATTGTTTGCACACAATCAATAGTGTAGATGGAAGAGAGAGACGGTTGGGTAACGTACCATTACCTATAAACAATTTATCTGAAAAAAGGGACGAGTTAATGGAAAAAGATCCTGAATATTGCATAGATGCTGGTTCTTTTGGTAATGTTTCGAGATTTATCAACCATGGATGTGAACCAAACCTCTTTGTACAATGTGTTCTCAGCAGCCACAGAGATCCTAGACTAGCTCGTGTAGTGCTATTTGCAGCAGAAGACATACCTCCCTATCAGGAACTCACCTATGACTATGGTTACACACTCGATAGTGTGTCTGATTCTGATGGAAACATCAAACAGCTTCAATGTCATTGTGGTGCAAAGGAATGTCGTAAGCGCTTGTACTAG

Protein sequence

>MsaT037255.1

MEATKSSENEAMMVPTRVSSRIQNHSKIQYNIYNSSGDKVFAQHVENIELGSKEESLVSTTKVCSQLQNRNEIPDDINHKRGMISIEDNIVEKRTKLNSLRRKPCSHSSSRSGSTISRSKSTSNDSLVFDGLDFRGILSLRETSRLANLRLLAKEEKNQSKNRHKIGKNIATLLSASNVEKNGIDNEYVPGITTSKYLINKLREIAKMGTYKVHLMEGQVSKALSSSPSLVCKDISNGQEAISIIATNDFDDPPVAPTGFEYISSNKVSPSIEVPSSAAGCNCKGSCRTKRCSCANHNGSKFSYNNIGRLIEPQDIVVECGPQCGCGPKCGNKVSQQGLSYRLEVYRTPKKGWAVRTWDFIPSGAPVVEYIGVLIRDDELGSANGNDYIFDIDCLHTINSVDGRERRLGNVPLPINNLSEKRDELMEKDPEYCIDAGSFGNVSRFINHGCEPNLFVQCVLSSHRDPRLARVVLFAAEDIPPYQELTYDYGYTLDSVSDSDGNIKQLQCHCGAKECRKRLY*