Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037306 | XP_013448523.1 | 95.800 | 500 | 11 | 2 | 1 | 496 | 19 | 512 | 0.0 | 978 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037306 | sp|Q9SRT2|BH062_ARATH | 46.407 | 487 | 176 | 13 | 1 | 480 | 26 | 434 | 1.01e-119 | 362 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037306 | tr|A0A072U9Q4|A0A072U9Q4_MEDTR | 95.800 | 500 | 11 | 2 | 1 | 496 | 19 | 512 | 0.0 | 978 |
Gene ID | Type | Classification |
---|---|---|
MsaG037306 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037306 | MtrunA17_Chr7g0234761 | 95.800 | 500 | 11 | 2 | 1 | 496 | 19 | 512 | 0.0 | 978 |
MsaG037306 | MtrunA17_Chr8g0339091 | 63.922 | 510 | 123 | 15 | 12 | 496 | 15 | 488 | 0.0 | 555 |
MsaG037306 | MtrunA17_Chr1g0152131 | 36.788 | 386 | 171 | 11 | 79 | 428 | 74 | 422 | 4.23e-54 | 187 |
MsaG037306 | MtrunA17_Chr8g0365941 | 38.592 | 355 | 162 | 13 | 116 | 440 | 125 | 453 | 2.55e-52 | 184 |
MsaG037306 | MtrunA17_Chr4g0035101 | 53.571 | 196 | 68 | 6 | 215 | 408 | 72 | 246 | 2.11e-50 | 175 |
MsaG037306 | MtrunA17_Chr3g0144641 | 49.107 | 224 | 99 | 6 | 281 | 495 | 170 | 387 | 5.68e-49 | 173 |
MsaG037306 | MtrunA17_Chr8g0363921 | 50.739 | 203 | 84 | 4 | 217 | 412 | 76 | 269 | 1.38e-48 | 168 |
MsaG037306 | MtrunA17_Chr8g0385911 | 69.643 | 112 | 31 | 2 | 293 | 401 | 137 | 248 | 2.75e-43 | 155 |
MsaG037306 | MtrunA17_Chr5g0415291 | 56.667 | 150 | 48 | 2 | 240 | 389 | 68 | 200 | 3.79e-43 | 152 |
MsaG037306 | MtrunA17_Chr7g0258161 | 58.333 | 132 | 44 | 3 | 298 | 420 | 170 | 299 | 1.12e-41 | 152 |
MsaG037306 | MtrunA17_Chr3g0131771 | 88.750 | 80 | 9 | 0 | 293 | 372 | 139 | 218 | 4.40e-41 | 150 |
MsaG037306 | MtrunA17_Chr1g0174161 | 61.111 | 108 | 37 | 2 | 298 | 400 | 157 | 264 | 1.28e-38 | 143 |
MsaG037306 | MtrunA17_Chr6g0484271 | 64.078 | 103 | 37 | 0 | 279 | 381 | 133 | 235 | 8.44e-37 | 137 |
MsaG037306 | MtrunA17_Chr4g0074161 | 54.054 | 111 | 42 | 4 | 301 | 405 | 206 | 313 | 1.91e-22 | 99.4 |
MsaG037306 | MtrunA17_Chr1g0190731 | 64.000 | 75 | 26 | 1 | 292 | 366 | 184 | 257 | 5.13e-22 | 97.4 |
MsaG037306 | MtrunA17_Chr4g0032951 | 58.462 | 65 | 27 | 0 | 301 | 365 | 355 | 419 | 2.45e-15 | 78.2 |
MsaG037306 | MtrunA17_Chr1g0184841 | 60.000 | 75 | 29 | 1 | 292 | 366 | 111 | 184 | 2.48e-15 | 76.3 |
MsaG037306 | MtrunA17_Chr4g0014771 | 55.385 | 65 | 29 | 0 | 301 | 365 | 118 | 182 | 3.63e-15 | 73.9 |
MsaG037306 | MtrunA17_Chr2g0329041 | 53.846 | 65 | 30 | 0 | 299 | 363 | 330 | 394 | 6.56e-15 | 76.6 |
MsaG037306 | MtrunA17_Chr1g0182791 | 52.174 | 69 | 32 | 1 | 303 | 371 | 319 | 386 | 7.82e-15 | 77.0 |
MsaG037306 | MtrunA17_Chr1g0174271 | 52.174 | 69 | 33 | 0 | 301 | 369 | 298 | 366 | 2.04e-14 | 75.1 |
MsaG037306 | MtrunA17_Chr7g0258181 | 50.725 | 69 | 34 | 0 | 301 | 369 | 243 | 311 | 2.07e-14 | 74.3 |
MsaG037306 | MtrunA17_Chr1g0193321 | 51.562 | 64 | 30 | 1 | 303 | 366 | 464 | 526 | 2.85e-14 | 75.5 |
MsaG037306 | MtrunA17_Chr3g0087771 | 50.769 | 65 | 32 | 0 | 301 | 365 | 322 | 386 | 5.06e-13 | 70.9 |
MsaG037306 | MtrunA17_Chr1g0153241 | 39.560 | 91 | 47 | 2 | 277 | 367 | 68 | 150 | 1.19e-12 | 68.2 |
MsaG037306 | MtrunA17_Chr8g0351881 | 47.692 | 65 | 34 | 0 | 301 | 365 | 316 | 380 | 1.86e-12 | 68.9 |
MsaG037306 | MtrunA17_Chr1g0152651 | 53.125 | 64 | 29 | 1 | 302 | 365 | 275 | 337 | 2.72e-12 | 68.2 |
MsaG037306 | MtrunA17_Chr5g0393721 | 51.562 | 64 | 30 | 1 | 302 | 365 | 225 | 287 | 7.08e-12 | 66.6 |
MsaG037306 | MtrunA17_Chr7g0262691 | 45.946 | 74 | 39 | 1 | 293 | 366 | 244 | 316 | 1.10e-11 | 67.0 |
MsaG037306 | MtrunA17_Chr3g0095391 | 50.000 | 64 | 31 | 1 | 303 | 366 | 311 | 373 | 1.40e-11 | 66.6 |
MsaG037306 | MtrunA17_Chr3g0134741 | 53.125 | 64 | 29 | 1 | 302 | 365 | 230 | 292 | 1.53e-11 | 65.5 |
MsaG037306 | MtrunA17_Chr7g0270871 | 26.347 | 167 | 109 | 3 | 203 | 369 | 117 | 269 | 2.41e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037306 | AT3G07340.1 | 46.407 | 487 | 176 | 13 | 1 | 480 | 26 | 434 | 1.03e-120 | 362 |
MsaG037306 | AT3G07340.2 | 45.610 | 467 | 170 | 12 | 1 | 460 | 26 | 415 | 2.28e-110 | 334 |
MsaG037306 | AT5G48560.1 | 47.255 | 510 | 189 | 21 | 1 | 483 | 32 | 488 | 3.29e-103 | 318 |
MsaG037306 | AT5G48560.2 | 47.844 | 487 | 175 | 20 | 1 | 460 | 32 | 466 | 1.65e-96 | 300 |
MsaG037306 | AT3G23690.1 | 46.840 | 269 | 103 | 7 | 216 | 479 | 113 | 346 | 1.58e-60 | 203 |
MsaG037306 | AT1G68920.1 | 41.493 | 335 | 149 | 10 | 96 | 400 | 97 | 414 | 7.36e-58 | 199 |
MsaG037306 | AT1G68920.4 | 41.493 | 335 | 149 | 10 | 96 | 400 | 97 | 414 | 7.36e-58 | 199 |
MsaG037306 | AT1G68920.2 | 41.493 | 335 | 149 | 10 | 96 | 400 | 97 | 414 | 7.36e-58 | 199 |
MsaG037306 | AT1G68920.3 | 42.814 | 334 | 145 | 12 | 96 | 400 | 97 | 413 | 7.74e-58 | 199 |
MsaG037306 | AT1G26260.4 | 43.003 | 293 | 122 | 10 | 111 | 400 | 68 | 318 | 1.07e-51 | 180 |
MsaG037306 | AT1G26260.1 | 43.003 | 293 | 122 | 10 | 111 | 400 | 68 | 318 | 1.07e-51 | 180 |
MsaG037306 | AT1G26260.6 | 43.003 | 293 | 122 | 10 | 111 | 400 | 68 | 318 | 1.07e-51 | 180 |
MsaG037306 | AT1G26260.2 | 43.003 | 293 | 122 | 10 | 111 | 400 | 68 | 318 | 1.07e-51 | 180 |
MsaG037306 | AT1G10120.2 | 68.908 | 119 | 36 | 1 | 275 | 392 | 179 | 297 | 3.01e-49 | 173 |
MsaG037306 | AT1G10120.1 | 68.908 | 119 | 36 | 1 | 275 | 392 | 179 | 297 | 3.01e-49 | 173 |
MsaG037306 | AT1G59640.1 | 53.073 | 179 | 60 | 3 | 242 | 420 | 79 | 233 | 5.20e-49 | 169 |
MsaG037306 | AT1G26260.5 | 42.403 | 283 | 110 | 10 | 125 | 400 | 60 | 296 | 1.17e-48 | 172 |
MsaG037306 | AT1G26260.3 | 71.429 | 119 | 27 | 3 | 285 | 400 | 153 | 267 | 4.63e-48 | 169 |
MsaG037306 | AT1G59640.2 | 59.589 | 146 | 57 | 1 | 242 | 387 | 79 | 222 | 1.26e-46 | 166 |
MsaG037306 | AT4G34530.1 | 55.488 | 164 | 51 | 4 | 242 | 387 | 99 | 258 | 9.80e-46 | 163 |
MsaG037306 | AT2G18300.1 | 53.333 | 165 | 64 | 3 | 251 | 402 | 129 | 293 | 4.04e-45 | 161 |
MsaG037306 | AT2G18300.2 | 54.167 | 168 | 60 | 5 | 251 | 402 | 129 | 295 | 7.57e-45 | 160 |
MsaG037306 | AT2G18300.3 | 54.167 | 168 | 60 | 5 | 251 | 402 | 129 | 295 | 1.32e-44 | 160 |
MsaG037306 | AT5G50915.3 | 50.476 | 210 | 79 | 10 | 216 | 411 | 62 | 260 | 2.42e-44 | 157 |
MsaG037306 | AT5G50915.4 | 50.476 | 210 | 79 | 10 | 216 | 411 | 62 | 260 | 2.42e-44 | 157 |
MsaG037306 | AT5G50915.1 | 49.065 | 214 | 84 | 9 | 216 | 415 | 62 | 264 | 4.25e-44 | 157 |
MsaG037306 | AT5G50915.2 | 49.065 | 214 | 84 | 9 | 216 | 415 | 62 | 264 | 4.25e-44 | 157 |
MsaG037306 | AT4G36540.2 | 57.857 | 140 | 55 | 2 | 249 | 388 | 93 | 228 | 1.60e-42 | 153 |
MsaG037306 | AT4G36540.1 | 58.451 | 142 | 54 | 3 | 249 | 390 | 93 | 229 | 2.72e-42 | 153 |
MsaG037306 | AT5G62610.2 | 76.087 | 92 | 17 | 1 | 282 | 373 | 139 | 225 | 3.46e-42 | 152 |
MsaG037306 | AT5G62610.1 | 76.087 | 92 | 17 | 1 | 282 | 373 | 139 | 225 | 3.46e-42 | 152 |
MsaG037306 | AT2G42300.4 | 68.889 | 90 | 28 | 0 | 298 | 387 | 182 | 271 | 6.53e-40 | 145 |
MsaG037306 | AT3G57800.2 | 56.489 | 131 | 42 | 3 | 298 | 417 | 201 | 327 | 8.30e-40 | 148 |
MsaG037306 | AT2G42300.1 | 60.833 | 120 | 37 | 3 | 298 | 417 | 182 | 291 | 2.32e-39 | 145 |
MsaG037306 | AT1G25330.1 | 59.292 | 113 | 37 | 1 | 280 | 392 | 92 | 195 | 1.47e-36 | 135 |
MsaG037306 | AT1G18400.2 | 72.289 | 83 | 23 | 0 | 299 | 381 | 143 | 225 | 1.46e-34 | 130 |
MsaG037306 | AT1G18400.1 | 72.289 | 83 | 23 | 0 | 299 | 381 | 143 | 225 | 2.63e-34 | 130 |
MsaG037306 | AT1G73830.2 | 73.171 | 82 | 22 | 0 | 300 | 381 | 146 | 227 | 3.67e-34 | 129 |
MsaG037306 | AT1G73830.1 | 73.171 | 82 | 22 | 0 | 300 | 381 | 146 | 227 | 3.92e-34 | 129 |
MsaG037306 | AT3G57800.1 | 41.573 | 178 | 42 | 4 | 298 | 417 | 201 | 374 | 3.58e-31 | 125 |
MsaG037306 | AT2G24260.2 | 66.667 | 72 | 23 | 1 | 295 | 366 | 29 | 99 | 9.47e-24 | 100 |
MsaG037306 | AT4G30980.1 | 53.922 | 102 | 36 | 3 | 265 | 366 | 104 | 194 | 3.91e-23 | 100 |
MsaG037306 | AT5G58010.1 | 54.545 | 99 | 44 | 1 | 268 | 366 | 66 | 163 | 6.27e-23 | 99.4 |
MsaG037306 | AT4G30980.2 | 53.922 | 102 | 36 | 3 | 265 | 366 | 152 | 242 | 8.84e-23 | 100 |
MsaG037306 | AT2G24260.1 | 66.667 | 72 | 23 | 1 | 295 | 366 | 132 | 202 | 1.03e-22 | 99.8 |
MsaG037306 | AT2G42300.5 | 83.721 | 43 | 7 | 0 | 298 | 340 | 182 | 224 | 1.33e-18 | 85.1 |
MsaG037306 | AT2G42300.3 | 83.721 | 43 | 7 | 0 | 298 | 340 | 182 | 224 | 1.33e-18 | 85.1 |
MsaG037306 | AT2G42300.2 | 83.721 | 43 | 7 | 0 | 298 | 340 | 182 | 224 | 1.51e-18 | 85.1 |
MsaG037306 | AT4G28790.1 | 37.302 | 126 | 61 | 3 | 241 | 366 | 228 | 335 | 4.42e-15 | 77.8 |
MsaG037306 | AT2G20180.7 | 53.968 | 63 | 28 | 1 | 304 | 366 | 210 | 271 | 1.73e-14 | 75.9 |
MsaG037306 | AT2G20180.1 | 53.968 | 63 | 28 | 1 | 304 | 366 | 210 | 271 | 1.73e-14 | 75.9 |
MsaG037306 | AT2G20180.5 | 53.968 | 63 | 28 | 1 | 304 | 366 | 210 | 271 | 1.73e-14 | 75.9 |
MsaG037306 | AT4G09180.1 | 52.239 | 67 | 32 | 0 | 299 | 365 | 182 | 248 | 1.95e-14 | 73.9 |
MsaG037306 | AT2G20180.4 | 53.968 | 63 | 28 | 1 | 304 | 366 | 281 | 342 | 2.35e-14 | 75.9 |
MsaG037306 | AT2G20180.6 | 53.968 | 63 | 28 | 1 | 304 | 366 | 281 | 342 | 2.35e-14 | 75.9 |
MsaG037306 | AT2G20180.2 | 53.968 | 63 | 28 | 1 | 304 | 366 | 281 | 342 | 2.35e-14 | 75.9 |
MsaG037306 | AT2G20180.3 | 53.968 | 63 | 28 | 1 | 304 | 366 | 281 | 342 | 2.35e-14 | 75.9 |
MsaG037306 | AT4G02590.3 | 57.500 | 80 | 29 | 2 | 291 | 366 | 69 | 147 | 2.93e-14 | 73.2 |
MsaG037306 | AT4G02590.2 | 57.500 | 80 | 29 | 2 | 291 | 366 | 132 | 210 | 3.85e-14 | 73.6 |
MsaG037306 | AT4G02590.1 | 57.500 | 80 | 29 | 2 | 291 | 366 | 132 | 210 | 3.85e-14 | 73.6 |
MsaG037306 | AT2G42280.1 | 53.125 | 64 | 30 | 0 | 301 | 364 | 279 | 342 | 4.03e-14 | 74.3 |
MsaG037306 | AT1G51140.1 | 56.250 | 64 | 28 | 0 | 301 | 364 | 304 | 367 | 4.83e-14 | 74.3 |
MsaG037306 | AT1G09530.3 | 51.562 | 64 | 30 | 1 | 303 | 366 | 339 | 401 | 6.08e-14 | 74.7 |
MsaG037306 | AT1G09530.2 | 51.562 | 64 | 30 | 1 | 303 | 366 | 339 | 401 | 6.08e-14 | 74.7 |
MsaG037306 | AT1G09530.5 | 51.562 | 64 | 30 | 1 | 303 | 366 | 339 | 401 | 6.08e-14 | 74.7 |
MsaG037306 | AT1G09530.1 | 51.562 | 64 | 30 | 1 | 303 | 366 | 339 | 401 | 6.08e-14 | 74.7 |
MsaG037306 | AT1G09530.4 | 51.562 | 64 | 30 | 1 | 303 | 366 | 339 | 401 | 6.08e-14 | 74.7 |
MsaG037306 | AT1G09530.6 | 51.562 | 64 | 30 | 1 | 303 | 366 | 339 | 401 | 6.08e-14 | 74.7 |
MsaG037306 | AT4G28790.2 | 35.156 | 128 | 65 | 3 | 241 | 368 | 228 | 337 | 6.64e-14 | 73.6 |
MsaG037306 | AT2G42280.3 | 54.545 | 66 | 28 | 1 | 301 | 364 | 279 | 344 | 6.88e-14 | 73.6 |
MsaG037306 | AT1G35460.1 | 52.308 | 65 | 31 | 0 | 301 | 365 | 181 | 245 | 1.09e-13 | 71.6 |
MsaG037306 | AT4G28815.2 | 56.897 | 58 | 24 | 1 | 304 | 361 | 71 | 127 | 1.49e-13 | 70.5 |
MsaG037306 | AT1G03040.2 | 63.636 | 66 | 23 | 1 | 301 | 366 | 139 | 203 | 1.60e-13 | 71.6 |
MsaG037306 | AT1G03040.1 | 63.636 | 66 | 23 | 1 | 301 | 366 | 144 | 208 | 1.78e-13 | 71.6 |
MsaG037306 | AT1G03040.3 | 63.636 | 66 | 23 | 1 | 301 | 366 | 144 | 208 | 3.21e-13 | 71.2 |
MsaG037306 | AT4G33880.1 | 43.000 | 100 | 54 | 2 | 266 | 365 | 233 | 329 | 3.78e-13 | 71.2 |
MsaG037306 | AT2G20180.8 | 53.333 | 60 | 27 | 1 | 304 | 363 | 281 | 339 | 5.53e-13 | 70.5 |
MsaG037306 | AT4G28815.1 | 56.897 | 58 | 24 | 1 | 304 | 361 | 147 | 203 | 5.59e-13 | 70.1 |
MsaG037306 | AT4G28800.1 | 53.226 | 62 | 28 | 1 | 304 | 365 | 252 | 312 | 1.46e-12 | 70.1 |
MsaG037306 | AT2G46970.1 | 38.462 | 104 | 49 | 3 | 268 | 366 | 194 | 287 | 1.54e-12 | 69.7 |
MsaG037306 | AT2G46970.2 | 38.462 | 104 | 49 | 3 | 268 | 366 | 163 | 256 | 1.85e-12 | 69.3 |
MsaG037306 | AT2G14760.1 | 44.318 | 88 | 48 | 1 | 278 | 365 | 214 | 300 | 1.96e-12 | 68.9 |
MsaG037306 | AT2G46970.3 | 38.095 | 105 | 48 | 4 | 267 | 366 | 173 | 265 | 1.97e-12 | 69.3 |
MsaG037306 | AT1G27740.1 | 43.617 | 94 | 44 | 2 | 272 | 365 | 146 | 230 | 5.17e-12 | 66.6 |
MsaG037306 | AT4G28800.2 | 35.484 | 124 | 63 | 3 | 239 | 362 | 215 | 321 | 5.34e-12 | 68.2 |
MsaG037306 | AT2G43140.1 | 48.611 | 72 | 35 | 1 | 295 | 364 | 126 | 197 | 1.27e-11 | 64.7 |
MsaG037306 | AT4G00050.2 | 50.769 | 65 | 31 | 1 | 301 | 365 | 105 | 168 | 3.05e-11 | 64.7 |
MsaG037306 | AT4G00050.1 | 50.769 | 65 | 31 | 1 | 301 | 365 | 207 | 270 | 5.63e-11 | 64.7 |
MsaG037306 | AT4G00050.3 | 50.769 | 65 | 31 | 1 | 301 | 365 | 207 | 270 | 6.73e-11 | 64.3 |
MsaG037306 | AT4G36930.1 | 50.820 | 61 | 29 | 1 | 307 | 367 | 197 | 256 | 8.01e-11 | 64.3 |
Find 88 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGAATTGATTGGTAAATT+AGG | 0.220575 | 7:+55604316 | MsaT037306.1:CDS |
GCAGTTCCTATCTATGAAAT+TGG | 0.223353 | 7:+55605917 | MsaT037306.1:intron |
TCCTCAGCACCATCCTATTA+TGG | 0.234641 | 7:+55606150 | MsaT037306.1:CDS |
TCTACTCCATTGTTGGAAAA+TGG | 0.244193 | 7:+55604598 | MsaT037306.1:CDS |
GTTTCAATCAAATAATTCTT+TGG | 0.281320 | 7:+55606104 | MsaT037306.1:CDS |
GAGGAATCTAATGGGAATAT+TGG | 0.295383 | 7:-55606132 | None:intergenic |
ATAAGTGCATGCCAAGGTTT+TGG | 0.306516 | 7:-55606266 | None:intergenic |
ACTAGAAGTTGAAGTTTCTT+TGG | 0.309086 | 7:-55604821 | None:intergenic |
ACAATTGTTCAGATGGGATT+TGG | 0.313660 | 7:+55606815 | MsaT037306.1:CDS |
ATTCACAATAATATTTCTAA+TGG | 0.321191 | 7:+55606198 | MsaT037306.1:CDS |
TTCTGCAACAGTTGAATTCA+TGG | 0.325717 | 7:-55604473 | None:intergenic |
GAATCAACAATCTCTGAAAA+TGG | 0.326758 | 7:+55604739 | MsaT037306.1:CDS |
ATTGTTGAGATGTTCAATTT+TGG | 0.329946 | 7:-55604448 | None:intergenic |
GAAATATTATTGTGAATTGC+TGG | 0.332246 | 7:-55606192 | None:intergenic |
TTACTCTTTCTGCAAGACTA+TGG | 0.332464 | 7:-55605177 | None:intergenic |
CTTCTCCTTATGTGAATTCA+AGG | 0.338861 | 7:+55604770 | MsaT037306.1:CDS |
TCATCTTCAGAGAATGTTAA+TGG | 0.340270 | 7:-55606785 | None:intergenic |
TCTTGTCCCTGGTTGCAATA+AGG | 0.355254 | 7:+55605500 | MsaT037306.1:CDS |
TGGCATAAACCACCATCTAA+TGG | 0.361230 | 7:-55606246 | None:intergenic |
GCTGCAAAATTCTCTTGCTT+TGG | 0.361360 | 7:+55604526 | MsaT037306.1:CDS |
GAATTGTTCTGCTCAATTGC+AGG | 0.362293 | 7:+55604687 | MsaT037306.1:CDS |
GGCATAAACCACCATCTAAT+GGG | 0.369801 | 7:-55606245 | None:intergenic |
CAGTGGCCAATTTCATAGAT+AGG | 0.382519 | 7:-55605923 | None:intergenic |
CCTCAGCACCATCCTATTAT+GGG | 0.394260 | 7:+55606151 | MsaT037306.1:CDS |
AGGAATCTAATGGGAATATT+GGG | 0.404291 | 7:-55606131 | None:intergenic |
GATCCAAGTTCTTTCAATGA+TGG | 0.405954 | 7:-55604646 | None:intergenic |
AATTCTCTTGCTTTGGAAGT+AGG | 0.408436 | 7:+55604533 | MsaT037306.1:CDS |
TTCAAATTATGAAATTGTAT+TGG | 0.408593 | 7:-55606860 | None:intergenic |
CTGGTGTTGTTGCCCATAAT+AGG | 0.412733 | 7:-55606163 | None:intergenic |
TCAAAGATCTACTCCATTGT+TGG | 0.414601 | 7:+55604591 | MsaT037306.1:CDS |
CTGACATGAATGTAATCCTT+TGG | 0.422273 | 7:-55605127 | None:intergenic |
GATGGTGCTGAGGAATCTAA+TGG | 0.422338 | 7:-55606141 | None:intergenic |
GTTGTTGACTTATCCCATAT+TGG | 0.422874 | 7:-55604196 | None:intergenic |
GCAGAATTCTCAACTGATCC+TGG | 0.423123 | 7:+55604490 | MsaT037306.1:CDS |
TATTATTCCTTCTAGGTCAC+TGG | 0.424071 | 7:+55605598 | MsaT037306.1:intron |
TGATTCAGCACTTAGTTCAA+TGG | 0.424451 | 7:+55604240 | MsaT037306.1:CDS |
CTAAGTGGATTTAATGAAGC+TGG | 0.440757 | 7:+55606294 | MsaT037306.1:CDS |
TTTGTCATCAGAGAATTGAT+TGG | 0.446145 | 7:+55604307 | MsaT037306.1:CDS |
ATTGGTAAATTAGGAAACAT+TGG | 0.447086 | 7:+55604325 | MsaT037306.1:CDS |
ATGTAATCCTTTGGAGCCTC+TGG | 0.449212 | 7:-55605118 | None:intergenic |
AACTCAGTGGACCCATTAGA+TGG | 0.450062 | 7:+55606234 | MsaT037306.1:CDS |
AAACAGAGGAAGAGTCAAAA+GGG | 0.465436 | 7:+55605038 | MsaT037306.1:CDS |
AGTCCATCATTGAAAGAACT+TGG | 0.466629 | 7:+55604643 | MsaT037306.1:CDS |
AAAATTGTCATTTGACATGT+TGG | 0.469622 | 7:-55604287 | None:intergenic |
TAATGGGTCCACTGAGTTGT+GGG | 0.475871 | 7:-55606229 | None:intergenic |
AAATATTATTGTGAATTGCT+GGG | 0.490799 | 7:-55606191 | None:intergenic |
CTAATGGGTCCACTGAGTTG+TGG | 0.497924 | 7:-55606230 | None:intergenic |
AAAACAGAGGAAGAGTCAAA+AGG | 0.503167 | 7:+55605037 | MsaT037306.1:CDS |
CCTCAACACAATTGTTCAGA+TGG | 0.508498 | 7:+55606808 | MsaT037306.1:CDS |
CTTGAATTCACATAAGGAGA+AGG | 0.513147 | 7:-55604769 | None:intergenic |
GCAGCTCTTTCTGCAAAACC+AGG | 0.515215 | 7:-55604508 | None:intergenic |
TTTGGAAGTAGGAGTTTCAA+TGG | 0.516264 | 7:+55604544 | MsaT037306.1:CDS |
AAAAGAAAAGTTTCTTCCAA+AGG | 0.532200 | 7:+55604793 | MsaT037306.1:CDS |
TGATGAGATCTCACAAACAT+TGG | 0.547828 | 7:+55604357 | MsaT037306.1:CDS |
ATACAATTTCATAATTTGAA+CGG | 0.549604 | 7:+55606863 | MsaT037306.1:CDS |
AACCATCTTCAATGCCTACA+TGG | 0.550038 | 7:+55604128 | None:intergenic |
CTTCTACAAGATCTTGTCCC+TGG | 0.550938 | 7:+55605489 | MsaT037306.1:CDS |
ATTTAATGAAGCTGGCTCAC+AGG | 0.551026 | 7:+55606302 | MsaT037306.1:CDS |
CTCAATACTAAAATCCACCT+TGG | 0.554681 | 7:-55605952 | None:intergenic |
AAGCGTATGAAAACAAATGA+AGG | 0.556302 | 7:+55604989 | MsaT037306.1:CDS |
ATGGTGCTGAGGAATCTAAT+GGG | 0.559576 | 7:-55606140 | None:intergenic |
GGAGGGAGAAAATCAGTGAA+AGG | 0.560766 | 7:+55605460 | MsaT037306.1:CDS |
GATGAAAGTGATTGCCATGT+AGG | 0.566700 | 7:-55604142 | None:intergenic |
AAAACCTCCAGAGGCTCCAA+AGG | 0.572707 | 7:+55605111 | MsaT037306.1:CDS |
TACCAACCTTATTGCAACCA+GGG | 0.572746 | 7:-55605506 | None:intergenic |
TAATCCTTTGGAGCCTCTGG+AGG | 0.576053 | 7:-55605115 | None:intergenic |
ATCATTGCAGCGTCAAGTTG+AGG | 0.580066 | 7:+55605660 | MsaT037306.1:CDS |
ATGCACTTATCTTCACTAAG+TGG | 0.581033 | 7:+55606279 | MsaT037306.1:CDS |
CTCAACACAATTGTTCAGAT+GGG | 0.581106 | 7:+55606809 | MsaT037306.1:CDS |
GGTGGTTTATGCCAAAACCT+TGG | 0.587041 | 7:+55606255 | MsaT037306.1:CDS |
TTACCAACCTTATTGCAACC+AGG | 0.614090 | 7:-55605507 | None:intergenic |
ATGTTGGAATTTGAAGCTGC+AGG | 0.621377 | 7:-55604271 | None:intergenic |
CCATCTGAACAATTGTGTTG+AGG | 0.622085 | 7:-55606808 | None:intergenic |
AACTTCTAGTAACCCTCCAA+TGG | 0.622580 | 7:+55604834 | MsaT037306.1:CDS |
AAAATTGAACATCTCAACAA+TGG | 0.629044 | 7:+55604450 | MsaT037306.1:CDS |
GGTACATATAGTAATAATGG+AGG | 0.636075 | 7:+55605061 | MsaT037306.1:CDS |
TGTTGTTGCCCATAATAGGA+TGG | 0.639120 | 7:-55606159 | None:intergenic |
GTGAAGATAAGTGCATGCCA+AGG | 0.643919 | 7:-55606272 | None:intergenic |
ATTCATGTCAGAGCAAGAAG+AGG | 0.647303 | 7:+55605139 | MsaT037306.1:CDS |
GAGCAATTCAAAACCTCCAG+AGG | 0.649431 | 7:+55605102 | MsaT037306.1:CDS |
AACAGAGGAAGAGTCAAAAG+GGG | 0.649630 | 7:+55605039 | MsaT037306.1:CDS |
CCCATAATAGGATGGTGCTG+AGG | 0.665748 | 7:-55606151 | None:intergenic |
AACTGTGACCCACAACTCAG+TGG | 0.673850 | 7:+55606221 | MsaT037306.1:CDS |
TCAGTGGACCCATTAGATGG+TGG | 0.680214 | 7:+55606237 | MsaT037306.1:CDS |
ATCCACCTTGGTGTTAACAG+TGG | 0.694539 | 7:-55605940 | None:intergenic |
ACAGAGGAAGAGTCAAAAGG+GGG | 0.718122 | 7:+55605040 | MsaT037306.1:CDS |
ATTGGCCACTGTTAACACCA+AGG | 0.721123 | 7:+55605935 | MsaT037306.1:CDS |
GGCCACTGTTAACACCAAGG+TGG | 0.728183 | 7:+55605938 | MsaT037306.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 55604139 | 55607310 | 55604139 | ID=MsaG037306 |
Chr7 | mRNA | 55604139 | 55607310 | 55604139 | ID=MsaT037306.1;Parent=MsaG037306 |
Chr7 | exon | 55604139 | 55604855 | 55604139 | ID=MsaT037306.1.exon1;Parent=MsaT037306.1 |
Chr7 | CDS | 55604139 | 55604855 | 55604139 | ID=cds.MsaT037306.1;Parent=MsaT037306.1 |
Chr7 | exon | 55604962 | 55605195 | 55604962 | ID=MsaT037306.1.exon2;Parent=MsaT037306.1 |
Chr7 | CDS | 55604962 | 55605195 | 55604962 | ID=cds.MsaT037306.1;Parent=MsaT037306.1 |
Chr7 | exon | 55605456 | 55605521 | 55605456 | ID=MsaT037306.1.exon3;Parent=MsaT037306.1 |
Chr7 | CDS | 55605456 | 55605521 | 55605456 | ID=cds.MsaT037306.1;Parent=MsaT037306.1 |
Chr7 | exon | 55605613 | 55605681 | 55605613 | ID=MsaT037306.1.exon4;Parent=MsaT037306.1 |
Chr7 | CDS | 55605613 | 55605681 | 55605613 | ID=cds.MsaT037306.1;Parent=MsaT037306.1 |
Chr7 | exon | 55605921 | 55605992 | 55605921 | ID=MsaT037306.1.exon5;Parent=MsaT037306.1 |
Chr7 | CDS | 55605921 | 55605992 | 55605921 | ID=cds.MsaT037306.1;Parent=MsaT037306.1 |
Chr7 | exon | 55606102 | 55606323 | 55606102 | ID=MsaT037306.1.exon6;Parent=MsaT037306.1 |
Chr7 | CDS | 55606102 | 55606323 | 55606102 | ID=cds.MsaT037306.1;Parent=MsaT037306.1 |
Chr7 | exon | 55606782 | 55606884 | 55606782 | ID=MsaT037306.1.exon7;Parent=MsaT037306.1 |
Chr7 | CDS | 55606782 | 55606884 | 55606782 | ID=cds.MsaT037306.1;Parent=MsaT037306.1 |
Chr7 | exon | 55607303 | 55607310 | 55607303 | ID=MsaT037306.1.exon8;Parent=MsaT037306.1 |
Chr7 | CDS | 55607303 | 55607310 | 55607303 | ID=cds.MsaT037306.1;Parent=MsaT037306.1 |
Gene Sequence |
Protein sequence |