AlfalfaGEDB | MsaG037347

M. sativa ssp. caerulea / MsaG037347

KEGG: K11430
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0030054 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048317 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090568 GO:0090698 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
PFAM: PF18264.4

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037347	AES79083.2	91.393	732	56	3	1	725	1	732	0.0	1373

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037347	sp\|Q9ZSM8\|EZA1_ARATH	58.491	371	138	7	364	725	491	854	2.96e-140	436
MsaG037347	sp\|Q9ZSM8\|EZA1_ARATH	40.702	285	157	6	29	305	34	314	2.24e-54	204

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037347	tr\|G7L054\|G7L054_MEDTR	91.393	732	56	3	1	725	1	732	0.0	1373

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG037347	TR	SET

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037347	MtrunA17_Chr7g0235081	92.711	343	23	1	385	725	4	346	0.0	663
MsaG037347	MtrunA17_Chr7g0235091	82.090	335	36	4	65	394	1	316	0.0	543
MsaG037347	MtrunA17_Chr1g0194631	56.280	414	165	7	322	725	350	757	4.68e-152	460
MsaG037347	MtrunA17_Chr1g0194631	43.706	286	150	5	65	339	1	286	1.36e-65	231
MsaG037347	MtrunA17_Chr5g0401921	50.000	434	199	10	298	724	440	862	5.38e-128	401
MsaG037347	MtrunA17_Chr5g0401921	31.546	317	187	7	12	299	23	338	4.66e-38	152
MsaG037347	MtrunA17_Chr7g0270001	59.259	270	103	5	458	723	30	296	6.03e-104	320
MsaG037347	MtrunA17_Chr7g0270011	51.709	234	95	5	189	419	70	288	3.39e-67	224
MsaG037347	MtrunA17_Chr5g0405161	43.204	206	68	5	216	418	12	171	1.31e-40	148
MsaG037347	MtrunA17_Chr2g0297191	37.121	132	80	2	570	698	1027	1158	2.12e-21	100

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037347	AT4G02020.1	58.491	371	138	7	364	725	491	854	3.01e-141	436
MsaG037347	AT4G02020.1	40.702	285	157	6	29	305	34	314	2.28e-55	204
MsaG037347	AT2G23380.2	52.969	421	163	12	323	724	270	674	1.09e-128	397
MsaG037347	AT2G23380.2	45.556	90	46	3	214	302	7	94	5.00e-14	76.3
MsaG037347	AT2G23380.1	52.969	421	163	12	323	724	497	901	3.10e-127	400
MsaG037347	AT2G23380.1	34.839	310	174	9	12	302	21	321	4.72e-40	159
MsaG037347	AT1G02580.1	38.715	607	308	17	118	712	127	681	1.22e-120	377
MsaG037347	AT4G02020.4	58.413	315	118	5	364	669	491	801	7.80e-119	375
MsaG037347	AT4G02020.4	40.702	285	157	6	29	305	34	314	1.72e-55	204
MsaG037347	AT4G02020.3	58.363	281	104	5	364	635	491	767	1.05e-102	333

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

Find 128 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACTCTAGGTCTAG+AGG	0.620684	7:+56390388	None:intergenic
AAAATCAAAGAGCACCCTCA+TGG	0.608079	7:-56380141	MsaT037347.1:CDS
AAACATATATCTTTCTCCAA+AGG	0.515068	7:+56385296	None:intergenic
AAACATCTTAACCTTTAAGA+AGG	0.506218	7:+56381676	None:intergenic
AAACCTTTGTATGTCTCTAA+TGG	0.393901	7:+56389469	None:intergenic
AAAGAATCTACAAATTCTCA+TGG	0.561243	7:-56380085	MsaT037347.1:CDS
AAAGATCCAAAAGGAGCGGA+TGG	0.569833	7:-56390063	MsaT037347.1:CDS
AAAGGTTTCCCACAAGGTTT+GGG	0.358435	7:-56389454	MsaT037347.1:CDS
AACAATATTCAACACTTCAT+CGG	0.465426	7:+56388818	None:intergenic
AACAATCTTTACACACATCT+GGG	0.552907	7:+56382632	None:intergenic

Showing 1 to 10 of 128 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	56380063	56390435	56380063	ID=MsaG037347
Chr7	mRNA	56380063	56390435	56380063	ID=MsaT037347.1;Parent=MsaG037347
Chr7	exon	56380063	56380257	56380063	ID=MsaT037347.1.exon17;Parent=MsaT037347.1
Chr7	CDS	56380063	56380257	56380063	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56380774	56380851	56380774	ID=MsaT037347.1.exon16;Parent=MsaT037347.1
Chr7	CDS	56380774	56380851	56380774	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56381409	56381537	56381409	ID=MsaT037347.1.exon15;Parent=MsaT037347.1
Chr7	CDS	56381409	56381537	56381409	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56381688	56381735	56381688	ID=MsaT037347.1.exon14;Parent=MsaT037347.1
Chr7	CDS	56381688	56381735	56381688	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56381827	56381917	56381827	ID=MsaT037347.1.exon13;Parent=MsaT037347.1
Chr7	CDS	56381827	56381917	56381827	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56382625	56382756	56382625	ID=MsaT037347.1.exon12;Parent=MsaT037347.1
Chr7	CDS	56382625	56382756	56382625	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56382880	56383106	56382880	ID=MsaT037347.1.exon11;Parent=MsaT037347.1
Chr7	CDS	56382880	56383106	56382880	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56383714	56383837	56383714	ID=MsaT037347.1.exon10;Parent=MsaT037347.1
Chr7	CDS	56383714	56383837	56383714	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56385266	56385516	56385266	ID=MsaT037347.1.exon9;Parent=MsaT037347.1
Chr7	CDS	56385266	56385516	56385266	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56386142	56386210	56386142	ID=MsaT037347.1.exon8;Parent=MsaT037347.1
Chr7	CDS	56386142	56386210	56386142	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56386289	56386336	56386289	ID=MsaT037347.1.exon7;Parent=MsaT037347.1
Chr7	CDS	56386289	56386336	56386289	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56388214	56388354	56388214	ID=MsaT037347.1.exon6;Parent=MsaT037347.1
Chr7	CDS	56388214	56388354	56388214	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56388782	56388866	56388782	ID=MsaT037347.1.exon5;Parent=MsaT037347.1
Chr7	CDS	56388782	56388866	56388782	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56389101	56389256	56389101	ID=MsaT037347.1.exon4;Parent=MsaT037347.1
Chr7	CDS	56389101	56389256	56389101	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56389358	56389620	56389358	ID=MsaT037347.1.exon3;Parent=MsaT037347.1
Chr7	CDS	56389358	56389620	56389358	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56390052	56390153	56390052	ID=MsaT037347.1.exon2;Parent=MsaT037347.1
Chr7	CDS	56390052	56390153	56390052	ID=cds.MsaT037347.1;Parent=MsaT037347.1
Chr7	exon	56390397	56390435	56390397	ID=MsaT037347.1.exon1;Parent=MsaT037347.1
Chr7	CDS	56390397	56390435	56390397	ID=cds.MsaT037347.1;Parent=MsaT037347.1

Gene Sequence

>MsaT037347.1

ATGGCGTCTAACATCGCAACTTCTGCCTCTAGACCTAGAGAACAACAGGGAGAGGCGACGATTGAAGATCCTCAAATCTTGATGAACAAGATAAAATTGTTAAAAGAAAAGATCCAAAAGGAGCGGATGGAAACAGTTCAAAAGAAACTTCAGATAAATGAGAAGAATCTCCAATGTGAACTTTCCAAGGTCATGACAACAGTGTCAAGATATAACTCATCAATAACTGGGAAGGATAATGTTCAAATTCATTCATTAAAAATTCACCATCCATTAGAGACATACAAAGGTTTCCCACAAGGTTTGGGAAATAAATGCCTTCATGTTGTATTATTTAAGCATACTTCTGGATTACAACGTGTTCAAAAGATACCTCATTATACATCATGGATACACTTGTTTAGAAATGAGAGAATGACGAAAGCTGATGCATTTTCTGCAAGACGAAACATATATTACGATCAACATGCAGGTGAAACAATCATATGTAGTGATACTGATGAAGAAGAGAACAAAGAAGTTAAACGTGACTTTTCTTATGGTGAAGACGAACTTCTATGGATGACATTTGAAGAATATGGTTTAACCGATGAAGTGTTGAATATTGTTCGAAGCTATATTGGAGGTACCACTGCAGAAATTGAGGAGAGGTATAAATATCTCAAAGAAAAGAGCATGCTTTCTAAAGATTCAAGAGAAAATGCATCTAATTCTGGCCTATGTTTGGATAAAAGTTTGAGTGAGGCTTTAAGTACTTTTGATCACTTTTTCTGTCGTCGTTGCTTGATCTTTGATTGTCCTCTGCACGGATGTTCTCAACCATTAATATATTCTAGGGAAAAGCAACCAATTTGGCAACCAGAAGGTGAGAGGGAAGTATGTGGAGATCATTGTTACCTTAAGTTAAAGGATGTCAATATCTCATCAGAAGGTTCAACTTCAGGGTCTTTTCCGGATAATGAAATTCAAACAATGGAGAATGTAGATGAGATATTGGCACCCTCTAATTCAAAGGAAATCACTGATAAAATAGAATTGATGCGTTTATCCAACTCAATGGAAGGGCAAGATGTTATGATGTATAATATCACAGAATGGAAACCTTTGGAGAAAGATATATGTTTAAAGGGAATAGAGATGTTTGGAAAAAACAGTTGTCTTATATGTCGGAACTTACTTGTTGGCTTCAAGACGTGCATGGAAATAGGCAGATACATGCATGAAGAGATGCCAAATGGATCTATAGATGAAAATGGAACATTTGTTGCACAATACAATGACCATGAGGTGCCATCAAGCTCCAAGAGAGGTAGGAGAAAAGGGAAAAACAAGAAGGTCAGATCTTTTTCAAAGTCTCGAGGCATCCGATCTTGGCGAAAAAGAATGATTGCTGGGGATAACGAACCCTATAAGCCTCACTATACACCTTGTGAGTGTCAAGGAATGTGTACGAAGAAAGAATGTTCTTGTCTTCTTAAAGGATCTTGTTGTGAGAAATACTGCGGGTGTGACAAGCAATGTAGACATCGATTCAGAGGATGTCTTTGTGTTAAAAGTCAATGCAGAACTCGACAATGTCCATGTTTTGCAGCAAAACGAGAATGTGACCCAGATGTGTGTAAAGATTGTTGGGCTAGTTGTGGTGATGATACGTTTGAAGGGCCAGTTCCTCGTGGAGATGGTCAATGTGAAAATATGAATCTTCTTTTGGGGAAAAATAAACAAAGGATTTTTTTAGCAAGGTCTGATGTTGCTGGATGGGGAGCCTTCTTAAAGAACCCTGTCAACAAAAATGAGTATTTAGGAGAGTACACAGGTGAATTAATCTCTCACAAAGAAGCAGAAAAGCGTGGTAAATTGTATGAACGTGAAAACTTCTCTTTCCTTTTTGACGTGGATGATAAGTATTGTATTGATGCTTATCGCAAGGGAGACAAGTTAAAATTTGCAAACCACTCTTCAGAACCCAACTGTTATCCACAGGGTATGTTTGTTGCTGGAGACTATCGTGTAGCCATATTTGCTAAGGAACGCATTGAAGCTGGTGAGGAACTTTTCTATGATTACAATTATACGGAAAATCAAAGAGCACCCTCATGGTTTCTTGAAGCCAATAAAAATGCTTCCAAGAAAAAAGAATCTACAAATTCTCATGGCAAAGGCAAGAAATTTGAGTAA

Protein sequence

>MsaT037347.1

MASNIATSASRPREQQGEATIEDPQILMNKIKLLKEKIQKERMETVQKKLQINEKNLQCELSKVMTTVSRYNSSITGKDNVQIHSLKIHHPLETYKGFPQGLGNKCLHVVLFKHTSGLQRVQKIPHYTSWIHLFRNERMTKADAFSARRNIYYDQHAGETIICSDTDEEENKEVKRDFSYGEDELLWMTFEEYGLTDEVLNIVRSYIGGTTAEIEERYKYLKEKSMLSKDSRENASNSGLCLDKSLSEALSTFDHFFCRRCLIFDCPLHGCSQPLIYSREKQPIWQPEGEREVCGDHCYLKLKDVNISSEGSTSGSFPDNEIQTMENVDEILAPSNSKEITDKIELMRLSNSMEGQDVMMYNITEWKPLEKDICLKGIEMFGKNSCLICRNLLVGFKTCMEIGRYMHEEMPNGSIDENGTFVAQYNDHEVPSSSKRGRRKGKNKKVRSFSKSRGIRSWRKRMIAGDNEPYKPHYTPCECQGMCTKKECSCLLKGSCCEKYCGCDKQCRHRFRGCLCVKSQCRTRQCPCFAAKRECDPDVCKDCWASCGDDTFEGPVPRGDGQCENMNLLLGKNKQRIFLARSDVAGWGAFLKNPVNKNEYLGEYTGELISHKEAEKRGKLYERENFSFLFDVDDKYCIDAYRKGDKLKFANHSSEPNCYPQGMFVAGDYRVAIFAKERIEAGEELFYDYNYTENQRAPSWFLEANKNASKKKESTNSHGKGKKFE*