Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037347 | AES79083.2 | 91.393 | 732 | 56 | 3 | 1 | 725 | 1 | 732 | 0.0 | 1373 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037347 | sp|Q9ZSM8|EZA1_ARATH | 58.491 | 371 | 138 | 7 | 364 | 725 | 491 | 854 | 2.96e-140 | 436 |
MsaG037347 | sp|Q9ZSM8|EZA1_ARATH | 40.702 | 285 | 157 | 6 | 29 | 305 | 34 | 314 | 2.24e-54 | 204 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037347 | tr|G7L054|G7L054_MEDTR | 91.393 | 732 | 56 | 3 | 1 | 725 | 1 | 732 | 0.0 | 1373 |
Gene ID | Type | Classification |
---|---|---|
MsaG037347 | TR | SET |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037347 | MtrunA17_Chr7g0235081 | 92.711 | 343 | 23 | 1 | 385 | 725 | 4 | 346 | 0.0 | 663 |
MsaG037347 | MtrunA17_Chr7g0235091 | 82.090 | 335 | 36 | 4 | 65 | 394 | 1 | 316 | 0.0 | 543 |
MsaG037347 | MtrunA17_Chr1g0194631 | 56.280 | 414 | 165 | 7 | 322 | 725 | 350 | 757 | 4.68e-152 | 460 |
MsaG037347 | MtrunA17_Chr1g0194631 | 43.706 | 286 | 150 | 5 | 65 | 339 | 1 | 286 | 1.36e-65 | 231 |
MsaG037347 | MtrunA17_Chr5g0401921 | 50.000 | 434 | 199 | 10 | 298 | 724 | 440 | 862 | 5.38e-128 | 401 |
MsaG037347 | MtrunA17_Chr5g0401921 | 31.546 | 317 | 187 | 7 | 12 | 299 | 23 | 338 | 4.66e-38 | 152 |
MsaG037347 | MtrunA17_Chr7g0270001 | 59.259 | 270 | 103 | 5 | 458 | 723 | 30 | 296 | 6.03e-104 | 320 |
MsaG037347 | MtrunA17_Chr7g0270011 | 51.709 | 234 | 95 | 5 | 189 | 419 | 70 | 288 | 3.39e-67 | 224 |
MsaG037347 | MtrunA17_Chr5g0405161 | 43.204 | 206 | 68 | 5 | 216 | 418 | 12 | 171 | 1.31e-40 | 148 |
MsaG037347 | MtrunA17_Chr2g0297191 | 37.121 | 132 | 80 | 2 | 570 | 698 | 1027 | 1158 | 2.12e-21 | 100 |
MsaG037347 | MtrunA17_Chr1g0201621 | 35.625 | 160 | 83 | 4 | 534 | 691 | 61 | 202 | 3.60e-19 | 91.3 |
MsaG037347 | MtrunA17_Chr1g0201311 | 35.625 | 160 | 83 | 4 | 534 | 691 | 61 | 202 | 6.49e-19 | 90.5 |
MsaG037347 | MtrunA17_Chr1g0147121 | 33.582 | 134 | 87 | 2 | 564 | 695 | 881 | 1014 | 7.29e-17 | 85.5 |
MsaG037347 | MtrunA17_Chr7g0221611 | 35.537 | 121 | 75 | 1 | 574 | 691 | 904 | 1024 | 1.51e-16 | 84.3 |
MsaG037347 | MtrunA17_Chr3g0126701 | 34.426 | 122 | 78 | 2 | 576 | 695 | 922 | 1043 | 8.45e-16 | 82.0 |
MsaG037347 | MtrunA17_Chr2g0305371 | 32.800 | 125 | 80 | 2 | 572 | 693 | 330 | 453 | 1.22e-15 | 80.5 |
MsaG037347 | MtrunA17_Chr1g0149611 | 32.540 | 126 | 79 | 1 | 572 | 691 | 360 | 485 | 1.94e-15 | 79.7 |
MsaG037347 | MtrunA17_Chr7g0275611 | 34.146 | 123 | 79 | 2 | 576 | 696 | 823 | 945 | 2.39e-15 | 80.5 |
MsaG037347 | MtrunA17_Chr8g0347071 | 31.967 | 122 | 81 | 2 | 576 | 695 | 808 | 929 | 2.81e-14 | 77.0 |
MsaG037347 | MtrunA17_Chr1g0149581 | 30.952 | 126 | 81 | 1 | 572 | 691 | 1518 | 1643 | 6.91e-14 | 75.9 |
MsaG037347 | MtrunA17_Chr6g0477001 | 32.231 | 121 | 80 | 2 | 575 | 693 | 112 | 232 | 9.54e-13 | 70.1 |
MsaG037347 | MtrunA17_Chr4g0003511 | 30.233 | 172 | 81 | 5 | 554 | 692 | 859 | 1024 | 3.34e-11 | 67.0 |
MsaG037347 | MtrunA17_Chr5g0399801 | 32.934 | 167 | 71 | 6 | 563 | 695 | 905 | 1064 | 4.01e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037347 | AT4G02020.1 | 58.491 | 371 | 138 | 7 | 364 | 725 | 491 | 854 | 3.01e-141 | 436 |
MsaG037347 | AT4G02020.1 | 40.702 | 285 | 157 | 6 | 29 | 305 | 34 | 314 | 2.28e-55 | 204 |
MsaG037347 | AT2G23380.2 | 52.969 | 421 | 163 | 12 | 323 | 724 | 270 | 674 | 1.09e-128 | 397 |
MsaG037347 | AT2G23380.2 | 45.556 | 90 | 46 | 3 | 214 | 302 | 7 | 94 | 5.00e-14 | 76.3 |
MsaG037347 | AT2G23380.1 | 52.969 | 421 | 163 | 12 | 323 | 724 | 497 | 901 | 3.10e-127 | 400 |
MsaG037347 | AT2G23380.1 | 34.839 | 310 | 174 | 9 | 12 | 302 | 21 | 321 | 4.72e-40 | 159 |
MsaG037347 | AT1G02580.1 | 38.715 | 607 | 308 | 17 | 118 | 712 | 127 | 681 | 1.22e-120 | 377 |
MsaG037347 | AT4G02020.4 | 58.413 | 315 | 118 | 5 | 364 | 669 | 491 | 801 | 7.80e-119 | 375 |
MsaG037347 | AT4G02020.4 | 40.702 | 285 | 157 | 6 | 29 | 305 | 34 | 314 | 1.72e-55 | 204 |
MsaG037347 | AT4G02020.3 | 58.363 | 281 | 104 | 5 | 364 | 635 | 491 | 767 | 1.05e-102 | 333 |
MsaG037347 | AT4G02020.3 | 40.702 | 285 | 157 | 6 | 29 | 305 | 34 | 314 | 1.65e-55 | 204 |
MsaG037347 | AT4G02020.2 | 58.363 | 281 | 104 | 5 | 364 | 635 | 491 | 767 | 1.05e-102 | 333 |
MsaG037347 | AT4G02020.2 | 40.702 | 285 | 157 | 6 | 29 | 305 | 34 | 314 | 1.65e-55 | 204 |
MsaG037347 | AT1G02580.2 | 36.105 | 493 | 249 | 17 | 118 | 596 | 127 | 567 | 1.68e-78 | 263 |
MsaG037347 | AT5G42400.7 | 31.443 | 194 | 120 | 4 | 508 | 698 | 1192 | 1375 | 2.99e-20 | 97.1 |
MsaG037347 | AT5G42400.2 | 31.443 | 194 | 120 | 4 | 508 | 698 | 1192 | 1375 | 2.99e-20 | 97.1 |
MsaG037347 | AT5G42400.8 | 31.443 | 194 | 120 | 4 | 508 | 698 | 1192 | 1375 | 2.99e-20 | 97.1 |
MsaG037347 | AT5G42400.5 | 31.443 | 194 | 120 | 4 | 508 | 698 | 1192 | 1375 | 2.99e-20 | 97.1 |
MsaG037347 | AT5G42400.4 | 31.443 | 194 | 120 | 4 | 508 | 698 | 1192 | 1375 | 2.99e-20 | 97.1 |
MsaG037347 | AT5G42400.1 | 31.443 | 194 | 120 | 4 | 508 | 698 | 1192 | 1375 | 2.99e-20 | 97.1 |
MsaG037347 | AT5G42400.3 | 31.443 | 194 | 120 | 4 | 508 | 698 | 1192 | 1375 | 2.99e-20 | 97.1 |
MsaG037347 | AT5G42400.6 | 31.443 | 194 | 120 | 4 | 508 | 698 | 1192 | 1375 | 2.99e-20 | 97.1 |
MsaG037347 | AT1G76710.4 | 34.286 | 175 | 94 | 5 | 519 | 691 | 52 | 207 | 3.58e-18 | 89.0 |
MsaG037347 | AT1G76710.2 | 34.286 | 175 | 94 | 5 | 519 | 691 | 52 | 207 | 3.85e-18 | 88.6 |
MsaG037347 | AT1G76710.1 | 34.286 | 175 | 94 | 5 | 519 | 691 | 52 | 207 | 3.85e-18 | 88.6 |
MsaG037347 | AT1G76710.3 | 34.286 | 175 | 94 | 5 | 519 | 691 | 52 | 207 | 4.20e-18 | 88.6 |
MsaG037347 | AT2G31650.1 | 38.017 | 121 | 72 | 1 | 574 | 691 | 897 | 1017 | 8.74e-18 | 89.0 |
MsaG037347 | AT4G30860.1 | 33.333 | 126 | 78 | 2 | 572 | 693 | 323 | 446 | 3.02e-17 | 85.9 |
MsaG037347 | AT1G05830.2 | 37.190 | 121 | 73 | 1 | 574 | 691 | 918 | 1038 | 4.83e-17 | 86.3 |
MsaG037347 | AT1G05830.4 | 37.190 | 121 | 73 | 1 | 574 | 691 | 918 | 1038 | 4.83e-17 | 86.3 |
MsaG037347 | AT1G05830.1 | 37.190 | 121 | 73 | 1 | 574 | 691 | 918 | 1038 | 4.83e-17 | 86.3 |
MsaG037347 | AT1G05830.3 | 37.190 | 121 | 73 | 1 | 574 | 691 | 918 | 1038 | 4.83e-17 | 86.3 |
MsaG037347 | AT5G53430.1 | 32.836 | 134 | 88 | 2 | 564 | 695 | 890 | 1023 | 1.28e-15 | 81.6 |
MsaG037347 | AT4G27910.1 | 32.090 | 134 | 89 | 2 | 564 | 695 | 874 | 1007 | 3.53e-15 | 80.5 |
MsaG037347 | AT3G59960.3 | 33.884 | 121 | 78 | 2 | 575 | 693 | 111 | 231 | 1.30e-14 | 75.5 |
MsaG037347 | AT3G59960.2 | 33.884 | 121 | 78 | 2 | 575 | 693 | 111 | 231 | 1.30e-14 | 75.5 |
MsaG037347 | AT3G59960.4 | 33.884 | 121 | 78 | 2 | 575 | 693 | 111 | 231 | 1.30e-14 | 75.5 |
MsaG037347 | AT3G59960.1 | 33.884 | 121 | 78 | 2 | 575 | 693 | 111 | 231 | 1.88e-14 | 75.9 |
MsaG037347 | AT3G61740.2 | 32.773 | 119 | 77 | 2 | 576 | 691 | 840 | 958 | 3.30e-13 | 73.9 |
MsaG037347 | AT3G61740.1 | 32.773 | 119 | 77 | 2 | 576 | 691 | 876 | 994 | 4.26e-13 | 73.6 |
MsaG037347 | AT2G44150.1 | 32.258 | 124 | 82 | 2 | 572 | 693 | 113 | 236 | 8.67e-13 | 70.9 |
MsaG037347 | AT1G77300.2 | 32.877 | 146 | 88 | 5 | 552 | 692 | 1005 | 1145 | 2.44e-12 | 71.2 |
MsaG037347 | AT1G77300.1 | 36.364 | 110 | 66 | 2 | 586 | 692 | 1037 | 1145 | 3.60e-12 | 70.9 |
Find 128 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACCTTCTGGTTGCCAAAT+TGG | 0.150159 | 7:+56386176 | None:intergenic |
GAATGTTCTTGTCTTCTTAA+AGG | 0.159465 | 7:-56382904 | MsaT037347.1:CDS |
CTCCTTACAGAATATATTAA+TGG | 0.172721 | 7:+56386281 | None:intergenic |
TGAAAATATGAATCTTCTTT+TGG | 0.177238 | 7:-56381844 | MsaT037347.1:CDS |
GGAGAAAGATATATGTTTAA+AGG | 0.212479 | 7:-56385291 | MsaT037347.1:CDS |
AATGCGTTCCTTAGCAAATA+TGG | 0.253069 | 7:+56380204 | None:intergenic |
CTGTTTCCATCCGCTCCTTT+TGG | 0.259909 | 7:+56390057 | None:intergenic |
TTTCTATGATTACAATTATA+CGG | 0.269536 | 7:-56380164 | MsaT037347.1:CDS |
GTATTATTTAAGCATACTTC+TGG | 0.278975 | 7:-56389412 | MsaT037347.1:CDS |
CATACTTCCCTCTCACCTTC+TGG | 0.281824 | 7:+56386164 | None:intergenic |
AGGATGACATTTGAAGAATA+TGG | 0.282881 | 7:-56388846 | MsaT037347.1:CDS |
AGATATAACTCATCAATAAC+TGG | 0.289142 | 7:-56389532 | MsaT037347.1:CDS |
AATGGATCTATAGATGAAAA+TGG | 0.289635 | 7:-56383736 | MsaT037347.1:CDS |
AGAGAAAATGCATCTAATTC+TGG | 0.297548 | 7:-56388284 | MsaT037347.1:CDS |
CAAAGGTTTCCCACAAGGTT+TGG | 0.300398 | 7:-56389455 | MsaT037347.1:CDS |
TGGATGGGGAGCCTTCTTAA+AGG | 0.310146 | 7:-56381687 | MsaT037347.1:intron |
TCATCAGAAGGTTCAACTTC+AGG | 0.314585 | 7:-56385476 | MsaT037347.1:CDS |
CATCATGGATACACTTGTTT+AGG | 0.321050 | 7:-56389357 | MsaT037347.1:intron |
AGGTGTATAGTGAGGCTTAT+AGG | 0.324414 | 7:+56382957 | None:intergenic |
CCTTATCATCCACGTCAAAA+AGG | 0.325525 | 7:+56381408 | None:intergenic |
AGTGATTTCCTTTGAATTAG+AGG | 0.339236 | 7:+56385397 | None:intergenic |
CTACCTCTCTTGGAGCTTGA+TGG | 0.343291 | 7:+56383072 | None:intergenic |
GAGAAAGATATATGTTTAAA+GGG | 0.348869 | 7:-56385290 | MsaT037347.1:CDS |
AGAGGGAAAAGCAACCAATT+TGG | 0.356361 | 7:-56386190 | MsaT037347.1:CDS |
AAAGGTTTCCCACAAGGTTT+GGG | 0.358435 | 7:-56389454 | MsaT037347.1:CDS |
AATATTGTTCGAAGCTATAT+TGG | 0.363346 | 7:-56388804 | MsaT037347.1:CDS |
TTAAAGGGAATAGAGATGTT+TGG | 0.368970 | 7:-56385275 | MsaT037347.1:CDS |
CAACAATCTTTACACACATC+TGG | 0.375595 | 7:+56382631 | None:intergenic |
GGAGAATGTAGATGAGATAT+TGG | 0.383859 | 7:-56385423 | MsaT037347.1:CDS |
TGGAGATCATTGTTACCTTA+AGG | 0.384564 | 7:-56386141 | MsaT037347.1:intron |
GTATAGGGTATGTTTGTTGC+TGG | 0.388339 | 7:-56380241 | MsaT037347.1:intron |
ATTGTTTGAATTTCATTATC+CGG | 0.389689 | 7:+56385446 | None:intergenic |
AAACCTTTGTATGTCTCTAA+TGG | 0.393901 | 7:+56389469 | None:intergenic |
TTCAAGACGTGCATGGAAAT+AGG | 0.396142 | 7:-56383784 | MsaT037347.1:CDS |
TTAGCAAGGTCTGATGTTGC+TGG | 0.397541 | 7:-56381707 | MsaT037347.1:CDS |
ATCTAATTCTGGCCTATGTT+TGG | 0.405339 | 7:-56388273 | MsaT037347.1:CDS |
TCCAAGAGAGGTAGGAGAAA+AGG | 0.416552 | 7:-56383063 | MsaT037347.1:CDS |
ATTTCATGGACAGGAACAAC+AGG | 0.425535 | 7:-56390144 | MsaT037347.1:intron |
ATATGTCGGAACTTACTTGT+TGG | 0.426016 | 7:-56383808 | MsaT037347.1:CDS |
ATCTTGTTCATCAAGATTTG+AGG | 0.430475 | 7:+56390101 | None:intergenic |
GGTGTATAGTGAGGCTTATA+GGG | 0.433959 | 7:+56382958 | None:intergenic |
CATCAGAAGGTTCAACTTCA+GGG | 0.434183 | 7:-56385475 | MsaT037347.1:CDS |
TGACCATCTCCACGAGGAAC+TGG | 0.434927 | 7:+56381870 | None:intergenic |
AGTCTCGAGGCATCCGATCT+TGG | 0.440108 | 7:-56383011 | MsaT037347.1:CDS |
ATGGTGAAGACGAACTTCTA+TGG | 0.443474 | 7:-56389100 | MsaT037347.1:intron |
TATCACAGAATGGAAACCTT+TGG | 0.447819 | 7:-56385312 | MsaT037347.1:CDS |
ATCTTGCCCTTCCATTGAGT+TGG | 0.448245 | 7:+56385349 | None:intergenic |
AACAATATTCAACACTTCAT+CGG | 0.465426 | 7:+56388818 | None:intergenic |
CAGATGTGTGTAAAGATTGT+TGG | 0.468719 | 7:-56382630 | MsaT037347.1:CDS |
CCAAGAGAGGTAGGAGAAAA+GGG | 0.469723 | 7:-56383062 | MsaT037347.1:CDS |
GATGCGTTTATCCAACTCAA+TGG | 0.488340 | 7:-56385360 | MsaT037347.1:CDS |
ATTTATTTCCCAAACCTTGT+GGG | 0.492257 | 7:+56389446 | None:intergenic |
CATTTATTTCCCAAACCTTG+TGG | 0.501091 | 7:+56389445 | None:intergenic |
GCTAAGGAACGCATTGAAGC+TGG | 0.501599 | 7:-56380196 | MsaT037347.1:CDS |
AAACATCTTAACCTTTAAGA+AGG | 0.506218 | 7:+56381676 | None:intergenic |
GTGATTTCCTTTGAATTAGA+GGG | 0.513594 | 7:+56385398 | None:intergenic |
AAACATATATCTTTCTCCAA+AGG | 0.515068 | 7:+56385296 | None:intergenic |
TGGAGCTTGATGGCACCTCA+TGG | 0.515829 | 7:+56383082 | None:intergenic |
AGATACCTCATTATACATCA+TGG | 0.526029 | 7:-56389372 | MsaT037347.1:CDS |
GGGCCAGTTCCTCGTGGAGA+TGG | 0.526534 | 7:-56381873 | MsaT037347.1:CDS |
AAGGTCTGATGTTGCTGGAT+GGG | 0.527692 | 7:-56381702 | MsaT037347.1:CDS |
ATGCATGAAGAGATGCCAAA+TGG | 0.528944 | 7:-56383754 | MsaT037347.1:CDS |
TGTGGTGATGATACGTTTGA+AGG | 0.529298 | 7:-56381894 | MsaT037347.1:CDS |
GACTACCTGTGGATAACAGT+TGG | 0.530993 | 7:+56380768 | None:intergenic |
AACAGTTGGGTTCTGAAGAG+TGG | 0.535930 | 7:+56380782 | None:intergenic |
AGATGTGTGTAAAGATTGTT+GGG | 0.536713 | 7:-56382629 | MsaT037347.1:CDS |
TTTGGATAAAAGTTTGAGTG+AGG | 0.537637 | 7:-56388255 | MsaT037347.1:CDS |
GAAGGTGAGAGGGAAGTATG+TGG | 0.544057 | 7:-56386161 | MsaT037347.1:CDS |
GTTAAAAGAAAAGATCCAAA+AGG | 0.545062 | 7:-56390072 | MsaT037347.1:CDS |
TGACACTGTTGTCATGACCT+TGG | 0.545294 | 7:+56389555 | None:intergenic |
ACTACCTGTGGATAACAGTT+GGG | 0.550257 | 7:+56380769 | None:intergenic |
AGGTCTGATGTTGCTGGATG+GGG | 0.550995 | 7:-56381701 | MsaT037347.1:CDS |
TTGTATTGATGCTTATCGCA+AGG | 0.552057 | 7:-56380827 | MsaT037347.1:CDS |
AGGTACCACTGCAGAAATTG+AGG | 0.552212 | 7:-56388781 | MsaT037347.1:intron |
AACAATCTTTACACACATCT+GGG | 0.552907 | 7:+56382632 | None:intergenic |
ATCTTTGATTGTCCTCTGCA+CGG | 0.553369 | 7:-56386314 | MsaT037347.1:CDS |
CGTTTATCCAACTCAATGGA+AGG | 0.558111 | 7:-56385356 | MsaT037347.1:CDS |
CATCAAGCTCCAAGAGAGGT+AGG | 0.559332 | 7:-56383071 | MsaT037347.1:CDS |
AAAGAATCTACAAATTCTCA+TGG | 0.561243 | 7:-56380085 | MsaT037347.1:CDS |
TGTTGGCTTCAAGACGTGCA+TGG | 0.565706 | 7:-56383791 | MsaT037347.1:CDS |
TGTGTAAAGATTGTTGGGCT+AGG | 0.567230 | 7:-56382624 | MsaT037347.1:intron |
CAAGGTCTGATGTTGCTGGA+TGG | 0.567604 | 7:-56381703 | MsaT037347.1:CDS |
GGATAATGAAATTCAAACAA+TGG | 0.569073 | 7:-56385444 | MsaT037347.1:CDS |
AAAGATCCAAAAGGAGCGGA+TGG | 0.569833 | 7:-56390063 | MsaT037347.1:CDS |
ATTGGCACCCTCTAATTCAA+AGG | 0.571932 | 7:-56385405 | MsaT037347.1:CDS |
TCTCCAATGTGAACTTTCCA+AGG | 0.573777 | 7:-56389572 | MsaT037347.1:CDS |
TGATGTATAATATCACAGAA+TGG | 0.574561 | 7:-56385322 | MsaT037347.1:CDS |
ATTGTTCGAAGCTATATTGG+AGG | 0.577334 | 7:-56388801 | MsaT037347.1:CDS |
TGTATCCATGATGTATAATG+AGG | 0.582754 | 7:+56389367 | None:intergenic |
TCGTGTAGCCATATTTGCTA+AGG | 0.583432 | 7:-56380212 | MsaT037347.1:CDS |
TCTACAAATTCTCATGGCAA+AGG | 0.584690 | 7:-56380079 | MsaT037347.1:CDS |
TGTATTGATGCTTATCGCAA+GGG | 0.585357 | 7:-56380826 | MsaT037347.1:CDS |
TATGCAGTTGTCTTATATGT+CGG | 0.585978 | 7:-56383822 | MsaT037347.1:intron |
GATGTCAATATCTCATCAGA+AGG | 0.588941 | 7:-56385488 | MsaT037347.1:CDS |
TAACTCATCAATAACTGGGA+AGG | 0.595666 | 7:-56389527 | MsaT037347.1:CDS |
CAATGTAGACATCGATTCAG+AGG | 0.596591 | 7:-56382724 | MsaT037347.1:CDS |
GCTTAAATAATACAACATGA+AGG | 0.599735 | 7:+56389422 | None:intergenic |
TGGACAGGAACAACAGGGAG+AGG | 0.603618 | 7:-56390138 | MsaT037347.1:intron |
ATATATTACGATCAACATGC+AGG | 0.606040 | 7:-56389188 | MsaT037347.1:CDS |
AAAATCAAAGAGCACCCTCA+TGG | 0.608079 | 7:-56380141 | MsaT037347.1:CDS |
ACATACAAAGGTTTCCCACA+AGG | 0.608598 | 7:-56389460 | MsaT037347.1:CDS |
TTTGGCAACCAGAAGGTGAG+AGG | 0.613167 | 7:-56386172 | MsaT037347.1:CDS |
CAACCAATTTGGCAACCAGA+AGG | 0.613641 | 7:-56386179 | MsaT037347.1:CDS |
CTTTGTATGTCTCTAATGGA+TGG | 0.618170 | 7:+56389473 | None:intergenic |
AAAACAAACTCTAGGTCTAG+AGG | 0.620684 | 7:+56390388 | None:intergenic |
CTTGTTGTGAGAAATACTGC+GGG | 0.625135 | 7:-56382879 | MsaT037347.1:intron |
GGAACGCATTGAAGCTGGTG+AGG | 0.629930 | 7:-56380191 | MsaT037347.1:CDS |
CACATTCCTTGACACTCACA+AGG | 0.630215 | 7:+56382937 | None:intergenic |
AGAACCCAACTGTTATCCAC+AGG | 0.631114 | 7:-56380773 | MsaT037347.1:intron |
TTGGCAACCAGAAGGTGAGA+GGG | 0.633976 | 7:-56386171 | MsaT037347.1:CDS |
GATATAACTCATCAATAACT+GGG | 0.640330 | 7:-56389531 | MsaT037347.1:CDS |
AAGAAAAGATCCAAAAGGAG+CGG | 0.641722 | 7:-56390067 | MsaT037347.1:CDS |
GTGCCATCAAGCTCCAAGAG+AGG | 0.643581 | 7:-56383075 | MsaT037347.1:CDS |
TGACCTTGGAAAGTTCACAT+TGG | 0.643642 | 7:+56389569 | None:intergenic |
ATTGGCTTCAAGAAACCATG+AGG | 0.645862 | 7:+56380126 | None:intergenic |
GGTTGAGAACATCCGTGCAG+AGG | 0.648329 | 7:+56386302 | None:intergenic |
GTTTATCCAACTCAATGGAA+GGG | 0.649922 | 7:-56385355 | MsaT037347.1:CDS |
GTGGTGATGATACGTTTGAA+GGG | 0.651606 | 7:-56381893 | MsaT037347.1:CDS |
TATACACCTTGTGAGTGTCA+AGG | 0.655572 | 7:-56382943 | MsaT037347.1:CDS |
CACTCACAAGGTGTATAGTG+AGG | 0.661649 | 7:+56382949 | None:intergenic |
CACAAAGAAGCAGAAAAGCG+TGG | 0.662495 | 7:-56381461 | MsaT037347.1:CDS |
CATCCATTAGAGACATACAA+AGG | 0.663649 | 7:-56389472 | MsaT037347.1:CDS |
TTGGCTTCAAGAAACCATGA+GGG | 0.673115 | 7:+56380127 | None:intergenic |
TTTGAAGGGCCAGTTCCTCG+TGG | 0.677096 | 7:-56381879 | MsaT037347.1:CDS |
TCTTGTTGTGAGAAATACTG+CGG | 0.680957 | 7:-56382880 | MsaT037347.1:CDS |
TTTCATGGACAGGAACAACA+GGG | 0.680957 | 7:-56390143 | MsaT037347.1:intron |
TCACATTGACCATCTCCACG+AGG | 0.735800 | 7:+56381864 | None:intergenic |
GAGTATTTAGGAGAGTACAC+AGG | 0.736960 | 7:-56381497 | MsaT037347.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 56380063 | 56390435 | 56380063 | ID=MsaG037347 |
Chr7 | mRNA | 56380063 | 56390435 | 56380063 | ID=MsaT037347.1;Parent=MsaG037347 |
Chr7 | exon | 56380063 | 56380257 | 56380063 | ID=MsaT037347.1.exon17;Parent=MsaT037347.1 |
Chr7 | CDS | 56380063 | 56380257 | 56380063 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56380774 | 56380851 | 56380774 | ID=MsaT037347.1.exon16;Parent=MsaT037347.1 |
Chr7 | CDS | 56380774 | 56380851 | 56380774 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56381409 | 56381537 | 56381409 | ID=MsaT037347.1.exon15;Parent=MsaT037347.1 |
Chr7 | CDS | 56381409 | 56381537 | 56381409 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56381688 | 56381735 | 56381688 | ID=MsaT037347.1.exon14;Parent=MsaT037347.1 |
Chr7 | CDS | 56381688 | 56381735 | 56381688 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56381827 | 56381917 | 56381827 | ID=MsaT037347.1.exon13;Parent=MsaT037347.1 |
Chr7 | CDS | 56381827 | 56381917 | 56381827 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56382625 | 56382756 | 56382625 | ID=MsaT037347.1.exon12;Parent=MsaT037347.1 |
Chr7 | CDS | 56382625 | 56382756 | 56382625 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56382880 | 56383106 | 56382880 | ID=MsaT037347.1.exon11;Parent=MsaT037347.1 |
Chr7 | CDS | 56382880 | 56383106 | 56382880 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56383714 | 56383837 | 56383714 | ID=MsaT037347.1.exon10;Parent=MsaT037347.1 |
Chr7 | CDS | 56383714 | 56383837 | 56383714 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56385266 | 56385516 | 56385266 | ID=MsaT037347.1.exon9;Parent=MsaT037347.1 |
Chr7 | CDS | 56385266 | 56385516 | 56385266 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56386142 | 56386210 | 56386142 | ID=MsaT037347.1.exon8;Parent=MsaT037347.1 |
Chr7 | CDS | 56386142 | 56386210 | 56386142 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56386289 | 56386336 | 56386289 | ID=MsaT037347.1.exon7;Parent=MsaT037347.1 |
Chr7 | CDS | 56386289 | 56386336 | 56386289 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56388214 | 56388354 | 56388214 | ID=MsaT037347.1.exon6;Parent=MsaT037347.1 |
Chr7 | CDS | 56388214 | 56388354 | 56388214 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56388782 | 56388866 | 56388782 | ID=MsaT037347.1.exon5;Parent=MsaT037347.1 |
Chr7 | CDS | 56388782 | 56388866 | 56388782 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56389101 | 56389256 | 56389101 | ID=MsaT037347.1.exon4;Parent=MsaT037347.1 |
Chr7 | CDS | 56389101 | 56389256 | 56389101 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56389358 | 56389620 | 56389358 | ID=MsaT037347.1.exon3;Parent=MsaT037347.1 |
Chr7 | CDS | 56389358 | 56389620 | 56389358 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56390052 | 56390153 | 56390052 | ID=MsaT037347.1.exon2;Parent=MsaT037347.1 |
Chr7 | CDS | 56390052 | 56390153 | 56390052 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Chr7 | exon | 56390397 | 56390435 | 56390397 | ID=MsaT037347.1.exon1;Parent=MsaT037347.1 |
Chr7 | CDS | 56390397 | 56390435 | 56390397 | ID=cds.MsaT037347.1;Parent=MsaT037347.1 |
Gene Sequence |
Protein sequence |