AlfalfaGEDB | MsaG037458

M. sativa ssp. caerulea / MsaG037458

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006725 GO:0008150 GO:0008152 GO:0009698 GO:0009987 GO:0016020 GO:0016592 GO:0019222 GO:0019748 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043455 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:0070013 GO:0071704 GO:1901360 GO:2000762
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037458	KEH23728.1	86.801	447	53	2	280	725	897	1338	0.0	768

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037458	sp\|F4IN69\|MD33B_ARATH	57.231	484	188	6	252	721	793	1271	1.40e-169	523

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037458	tr\|A0A072U3I8\|A0A072U3I8_MEDTR	86.801	447	53	2	280	725	897	1338	0.0	768

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037458	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037458	MtrunA17_Chr7g0259571	86.925	413	48	2	314	725	1	408	0.0	707
MsaG037458	MtrunA17_Chr2g0334311	64.570	477	158	3	256	722	840	1315	0.0	599
MsaG037458	MtrunA17_Chr2g0287291	59.454	476	181	3	257	722	845	1318	1.04e-172	530
MsaG037458	MtrunA17_Chr7g0245401	42.117	444	238	6	280	718	879	1308	3.94e-100	335
MsaG037458	MtrunA17_Chr3g0092621	79.452	73	15	0	56	128	84	156	2.34e-32	123
MsaG037458	MtrunA17_Chr6g0488471	73.611	72	19	0	49	120	90	161	6.79e-32	125
MsaG037458	MtrunA17_Chr5g0415191	69.892	93	28	0	41	133	87	179	2.05e-31	125
MsaG037458	MtrunA17_Chr4g0055931	70.667	75	22	0	49	123	88	162	2.40e-31	125
MsaG037458	MtrunA17_Chr2g0331031	69.863	73	22	0	51	123	104	176	1.43e-30	123
MsaG037458	MtrunA17_Chr8g0389241	70.270	74	21	1	47	120	96	168	3.04e-30	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037458	AT2G48110.1	57.231	484	188	6	252	721	793	1271	1.42e-170	523
MsaG037458	AT3G23590.1	55.782	441	192	3	280	719	867	1305	3.49e-155	484
MsaG037458	AT5G47390.1	59.375	96	39	0	28	123	68	163	4.47e-32	128
MsaG037458	AT1G70000.1	73.256	86	23	0	41	126	83	168	6.54e-30	119
MsaG037458	AT1G70000.2	73.256	86	23	0	41	126	83	168	6.54e-30	119
MsaG037458	AT5G04760.1	66.667	75	25	0	48	122	91	165	1.05e-29	117
MsaG037458	AT1G49010.1	70.667	75	21	1	49	122	126	200	6.04e-29	118
MsaG037458	AT1G74840.2	74.419	86	22	0	43	128	83	168	2.39e-27	111
MsaG037458	AT1G74840.1	74.419	86	22	0	43	128	83	168	2.61e-27	112
MsaG037458	AT2G38090.1	66.667	72	24	0	51	122	136	207	2.64e-27	113

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Find 172 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGCATGCAGGGCCA+GGG	0.483683	7:+58517834	None:intergenic
AAAGGAAAAGGAAGTGTAGC+TGG	0.501361	7:+58517960	None:intergenic
AAAGGTTATTGCAATTCATT+TGG	0.357195	7:-58517133	MsaT037458.1:CDS
AAAGTAGTAGTACCTTTGTA+TGG	0.525730	7:+58525361	None:intergenic
AAATGGGCATGCAGGGCCAG+GGG	0.581112	7:+58517835	None:intergenic
AACAATTCCGGATCAACCTC+AGG	0.506041	7:+58516994	None:intergenic
AACCTCCTGATTGATTGACT+GGG	0.625426	7:+58519227	None:intergenic
AAGATTAATTACCTATAGCA+AGG	0.575466	7:+58518225	None:intergenic
AAGCAACGGCATTGAGAGTT+GGG	0.438037	7:+58517865	None:intergenic
AAGCAAGGCCATGACCAAGA+AGG	0.564852	7:+58517637	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	58516864	58525450	58516864	ID=MsaG037458
Chr7	mRNA	58516864	58525450	58516864	ID=MsaT037458.1;Parent=MsaG037458
Chr7	exon	58516864	58517993	58516864	ID=MsaT037458.1.exon11;Parent=MsaT037458.1
Chr7	CDS	58516864	58517993	58516864	ID=cds.MsaT037458.1;Parent=MsaT037458.1
Chr7	exon	58518237	58518443	58518237	ID=MsaT037458.1.exon10;Parent=MsaT037458.1
Chr7	CDS	58518237	58518443	58518237	ID=cds.MsaT037458.1;Parent=MsaT037458.1
Chr7	exon	58519151	58519283	58519151	ID=MsaT037458.1.exon9;Parent=MsaT037458.1
Chr7	CDS	58519151	58519283	58519151	ID=cds.MsaT037458.1;Parent=MsaT037458.1
Chr7	exon	58519313	58519431	58519313	ID=MsaT037458.1.exon8;Parent=MsaT037458.1
Chr7	CDS	58519313	58519431	58519313	ID=cds.MsaT037458.1;Parent=MsaT037458.1
Chr7	exon	58520894	58520976	58520894	ID=MsaT037458.1.exon7;Parent=MsaT037458.1
Chr7	CDS	58520894	58520976	58520894	ID=cds.MsaT037458.1;Parent=MsaT037458.1
Chr7	exon	58521025	58521094	58521025	ID=MsaT037458.1.exon6;Parent=MsaT037458.1
Chr7	CDS	58521025	58521094	58521025	ID=cds.MsaT037458.1;Parent=MsaT037458.1
Chr7	exon	58522435	58522498	58522435	ID=MsaT037458.1.exon5;Parent=MsaT037458.1
Chr7	CDS	58522435	58522498	58522435	ID=cds.MsaT037458.1;Parent=MsaT037458.1
Chr7	exon	58523398	58523606	58523398	ID=MsaT037458.1.exon4;Parent=MsaT037458.1
Chr7	CDS	58523398	58523606	58523398	ID=cds.MsaT037458.1;Parent=MsaT037458.1
Chr7	exon	58524488	58524563	58524488	ID=MsaT037458.1.exon3;Parent=MsaT037458.1
Chr7	CDS	58524488	58524563	58524488	ID=cds.MsaT037458.1;Parent=MsaT037458.1
Chr7	exon	58525266	58525275	58525266	ID=MsaT037458.1.exon2;Parent=MsaT037458.1
Chr7	CDS	58525266	58525275	58525266	ID=cds.MsaT037458.1;Parent=MsaT037458.1
Chr7	exon	58525374	58525450	58525374	ID=MsaT037458.1.exon1;Parent=MsaT037458.1
Chr7	CDS	58525374	58525450	58525374	ID=cds.MsaT037458.1;Parent=MsaT037458.1

Gene Sequence

>MsaT037458.1

ATGATTGTTGATTCAGTTGGGGATTTGAAGCTTGATGCTTTGGTTATGGGTAGCAGAGGTTTGGGTGCCATACAAAGAACTATCCCTCATAAAGTGGAATCAAATGAAGTTGAATGGTGGGATCAAATGAAGTTGAATGGTGGGGCTGAGCAGCAAAAAAGAGGGATTCCGTGGACTGAGGAAGAGCACAAGATGTTTTTGGTTGGATTGGAGAAAGTGGGAAAAGGTGATTGGAGAGGAATCTCAAGGAACTATGTGAAAACAAGAACGCCTACGCATGTTGCAAGTCATGCTCAGAAGTACTTTCTCCGCCGAAGTAATCTCAATTGCCGTCGCCGTAGATCCAGTCTCTTTGATATCACCACTGACACGTACATATTGTTGGCTTTCTTATTTGAATTTTATTCATGGCATCCTTCGCACACTTTTGATAACAATGTGTTGCGAGCTCGGCAGAACCTGTTGCCATCGCCGCAATCGCGAAGCGTTCCTACTCGCACCTGCGATTGCCCCGTTGAGCTCGCCATTGCGAGTTGTTTAGCTCGCCACTGCGAGTTAGTGCAGTACAGACCTGATGTTGTGCGAAATTGTTTAATTTCAGTTCAGTATCCTACGAACTTCACCACCAGTAATGGAGACGGCGATATCACTGAACATGATTTGTGTATGGTACAGGTATCGATACCACTGATATTATGCTTTTGGGAAAAGGAAGCTTCTCGCTTTTATATAATGCAGTGCTCCCAGTCAATCAATCAGGAGGTTATTAAAGTTCCCCTCAAGGATGTAATTGAAAGGTTTGTTTTAATTGTTATCGTTTTGTTATTGGCTGATTACTCAGGCCTCAAAGCTTTAGCCGATTTTATTCCAGCATCTTTGGTTTCCATTGCAAGCTACTTTTCGGCTGAAGTTACAAGGGGCGTATGGAAGCCAGCTTTCATGAATGGAACTGATTGGCCTAGCCCTGCTGCATATTTACCACTTGTTGAACAACAGATAAAGAAAATTTTAGCAGCCACAGGTGTTGATGTTCCAAGCCTTGCTATAGATGAGGACTCTCCAGCTACACTTCCTTTTCCTTTGGCAGCTTTCGTAAGCCTATCAATAACATACAAACTTGACAAAGGCAATGGGAGATTCCTCAATCTGATTGTCCCAACTCTCAATGCCGTTGCTTCTGTTTGCCCCTGGCCCTGCATGCCCATTTTTACCTCTTTATGGATCCAAAAGGTGAACCGTTGGCGTGACTACTTTTTGCTGCAAGCTTCCGGAACTGTCTTCCACCACAACAGAGATGCTGTAGTTCAGCTGCTAAAGAGTTGCTTCACATCCACTCTCAGACTTGGCTCTACATGTATGAATAATAATGGTGGTGTTGGTGCCCTTCTTGGTCATGGCCTTGCTTCCCAAGTTGCTGGTGGGATCTCTCCAGTTGCTCCAGGGATTCTCTACTTAAGAGTGTACCGGTCTATTGGAGATATTATGTTTTTGAACAAAGAAATCTTGTCCATTCTATTGCTTTCAGTTAAAGACATAGCAAGTAGCGAGTTACCTAAAGACAATGTAAAGAAACAACTAAATAAAATCAAGTATGGAATGAAATGTGGACAGGTTTCTCTTGTCAGATACAAGGCACGGGTCAAGCAAGCCGCGACACTCGGTGCTTCATTGGTTTGGATATCAGGTGGAAAAAAGTTGGTTCAATCATTGATAGGAGACACTGTTCCTTCCTGGTTTTTATCAGCTGATACGTTAGAACAGGATGATGGAGAATCTGGAGTGTTGGTTGCTATGCTTAGCGGCTATGCACTGGCGTATTTTGTTATGTTTAGTGTGGCATTTGCATGGGATATTGACAACTATTCAGTTCCACCAAATCGACGAGCAAAGGTTATTGCAATTCATTTGGAATTCCTTGCAAACACAATGGAGAGGCTTACATCACTGAGTTGCCATCATGCTACTTGGCAAGCCTATGTGTCAGGTTTTGTGAGCTTGATAGTGGGTTTACCTCAAATGTGGATTCCTGAGGTTGATCCGGAATTGTTGAAGAGACTAAGCAAGGGATTAAGACAATTGAATGAAGATGAGTTGGCTCTTCGCCTTTTGGAAATTGGAGGGATAGGTGTCATGGGTGCAGCAGCTGAAATGATAATAGCATCTGAAAGTATGTTGTAA

Protein sequence

>MsaT037458.1

MIVDSVGDLKLDALVMGSRGLGAIQRTIPHKVESNEVEWWDQMKLNGGAEQQKRGIPWTEEEHKMFLVGLEKVGKGDWRGISRNYVKTRTPTHVASHAQKYFLRRSNLNCRRRRSSLFDITTDTYILLAFLFEFYSWHPSHTFDNNVLRARQNLLPSPQSRSVPTRTCDCPVELAIASCLARHCELVQYRPDVVRNCLISVQYPTNFTTSNGDGDITEHDLCMVQVSIPLILCFWEKEASRFYIMQCSQSINQEVIKVPLKDVIERFVLIVIVLLLADYSGLKALADFIPASLVSIASYFSAEVTRGVWKPAFMNGTDWPSPAAYLPLVEQQIKKILAATGVDVPSLAIDEDSPATLPFPLAAFVSLSITYKLDKGNGRFLNLIVPTLNAVASVCPWPCMPIFTSLWIQKVNRWRDYFLLQASGTVFHHNRDAVVQLLKSCFTSTLRLGSTCMNNNGGVGALLGHGLASQVAGGISPVAPGILYLRVYRSIGDIMFLNKEILSILLLSVKDIASSELPKDNVKKQLNKIKYGMKCGQVSLVRYKARVKQAATLGASLVWISGGKKLVQSLIGDTVPSWFLSADTLEQDDGESGVLVAMLSGYALAYFVMFSVAFAWDIDNYSVPPNRRAKVIAIHLEFLANTMERLTSLSCHHATWQAYVSGFVSLIVGLPQMWIPEVDPELLKRLSKGLRQLNEDELALRLLEIGGIGVMGAAAEMIIASESML*