AlfalfaGEDB | MsaG037635

M. sativa ssp. caerulea / MsaG037635

KEGG: K15148
GO: GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141
PFAM: PF05983.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037635	KAG5243843.1	79.755	163	33	0	5	167	4	166	7.17e-88	265

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037635	sp\|Q9LZD7\|MED7B_ARATH	74.847	163	41	0	5	167	4	166	1.71e-80	238

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037635	tr\|A0A059DIJ1\|A0A059DIJ1_EUCGR	80.000	165	33	0	5	169	4	168	4.30e-85	256

TFs/TRs:

Gene ID	Type	Classification
MsaG037635	TR	MED7

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000583	MsaG037635	0.811390	1.229829e-50	2.172738e-48
MsaG002731	MsaG037635	0.829655	8.184758e-55	2.345474e-52
MsaG003938	MsaG037635	0.805083	2.676915e-49	4.066204e-47
MsaG004227	MsaG037635	0.820234	1.338682e-52	2.962709e-50
MsaG004367	MsaG037635	0.834764	4.519038e-56	1.503113e-53
MsaG004465	MsaG037635	0.802386	9.656423e-49	1.378190e-46
MsaG004782	MsaG037635	0.814789	2.227039e-51	4.282223e-49
MsaG005282	MsaG037635	0.855222	1.410016e-61	9.182372e-59
MsaG005288	MsaG037635	0.807196	9.659570e-50	1.541973e-47
MsaG005664	MsaG037635	0.823918	1.891327e-53	4.619278e-51
MsaG006425	MsaG037635	0.801907	1.210299e-48	1.708570e-46
MsaG006586	MsaG037635	0.803223	6.499223e-49	9.455822e-47
MsaG006743	MsaG037635	0.827434	2.799120e-54	7.533817e-52
MsaG007094	MsaG037635	0.835086	3.752649e-56	1.260235e-53
MsaG007665	MsaG037635	0.811544	1.138746e-50	2.019443e-48
MsaG007759	MsaG037635	0.801514	1.456282e-48	2.037469e-46
MsaG009172	MsaG037635	0.805405	2.293360e-49	3.509729e-47
MsaG009495	MsaG037635	0.824339	1.508182e-53	3.726137e-51
MsaG010314	MsaG037635	0.811086	1.430494e-50	2.508472e-48
MsaG010621	MsaG037635	0.824446	1.423741e-53	3.527608e-51
MsaG011133	MsaG037635	0.833615	8.740157e-56	2.809498e-53
MsaG044793	MsaG037635	0.813625	4.013272e-51	7.494658e-49
MsaG045861	MsaG037635	0.840669	1.399942e-57	5.581040e-55
MsaG045883	MsaG037635	0.801064	1.798276e-48	2.490386e-46
MsaG046532	MsaG037635	0.809577	3.016205e-50	5.098706e-48
MsaG002505	MsaG037635	0.802424	9.487731e-49	1.355277e-46
MsaG003580	MsaG037635	0.807940	6.726881e-50	1.093152e-47
MsaG013255	MsaG037635	0.819335	2.143572e-52	4.632746e-50
MsaG013398	MsaG037635	0.865747	9.450260e-65	9.198727e-62
MsaG025840	MsaG037635	0.803532	5.612035e-49	8.223609e-47
MsaG026617	MsaG037635	0.819901	1.593902e-52	3.496354e-50
MsaG027196	MsaG037635	0.810448	1.962127e-50	3.387672e-48
MsaG034035	MsaG037635	0.801606	1.394686e-48	1.955395e-46
MsaG031458	MsaG037635	0.819071	2.459526e-52	5.278684e-50
MsaG032719	MsaG037635	0.842676	4.161669e-58	1.768617e-55
MsaG030868	MsaG037635	0.807933	6.748968e-50	1.096568e-47
MsaG034266	MsaG037635	0.825240	9.266171e-54	2.346294e-51
MsaG031897	MsaG037635	0.826891	3.770591e-54	9.995554e-52
MsaG037375	MsaG037635	0.822371	4.325638e-53	1.013201e-50
MsaG037635	MsaG037000	0.806165	1.590841e-49	2.478440e-47
MsaG037635	MsaG037387	0.829306	9.942346e-55	2.820609e-52
MsaG037635	MsaG036656	0.817849	4.640946e-52	9.648921e-50
MsaG013177	MsaG037635	0.828153	1.883026e-54	5.171622e-52
MsaG014560	MsaG037635	0.812535	6.944474e-51	1.262012e-48
MsaG015329	MsaG037635	0.823542	2.313737e-53	5.593799e-51
MsaG015347	MsaG037635	0.804149	4.183711e-49	6.218937e-47
MsaG016474	MsaG037635	0.819310	2.171325e-52	4.689508e-50
MsaG016707	MsaG037635	0.804972	2.823412e-49	4.277652e-47
MsaG016972	MsaG037635	0.800335	2.529094e-48	3.445367e-46
MsaG017085	MsaG037635	0.827863	2.210367e-54	6.021298e-52
MsaG017267	MsaG037635	0.802796	7.955153e-49	1.146041e-46
MsaG018669	MsaG037635	0.804663	3.273766e-49	4.924402e-47
MsaG018847	MsaG037635	0.820823	9.820925e-53	2.207412e-50
MsaG018920	MsaG037635	0.800755	2.077934e-48	2.857874e-46
MsaG019019	MsaG037635	0.817001	7.189861e-52	1.462582e-49
MsaG019292	MsaG037635	0.803468	5.784864e-49	8.464295e-47
MsaG019937	MsaG037635	0.812629	6.623359e-51	1.206435e-48
MsaG019939	MsaG037635	0.805754	1.939620e-49	2.992637e-47
MsaG020075	MsaG037635	0.800434	2.414178e-48	3.296308e-46
MsaG020567	MsaG037635	0.835218	3.475194e-56	1.171648e-53
MsaG020667	MsaG037635	0.825961	6.265346e-54	1.618561e-51
MsaG021001	MsaG037635	0.803567	5.520797e-49	8.096232e-47
MsaG021418	MsaG037635	0.833565	8.993714e-56	2.886675e-53
MsaG022472	MsaG037635	0.814080	3.189817e-51	6.025161e-49
MsaG022820	MsaG037635	0.819569	1.896956e-52	4.124594e-50
MsaG022824	MsaG037635	0.807166	9.799651e-50	1.563253e-47
MsaG023442	MsaG037635	0.817551	5.412422e-52	1.116718e-49
MsaG024150	MsaG037635	0.822398	4.264318e-53	9.995495e-51
MsaG024152	MsaG037635	0.812213	8.158839e-51	1.470803e-48
MsaG024586	MsaG037635	0.820350	1.259569e-52	2.796135e-50
MsaG025262	MsaG037635	0.850438	3.236120e-60	1.780405e-57
MsaG025451	MsaG037635	0.800547	2.290090e-48	3.134865e-46
MsaG025797	MsaG037635	0.808093	6.242816e-50	1.018217e-47
MsaG026926	MsaG037635	0.813891	3.510726e-51	6.599977e-49
MsaG027046	MsaG037635	0.805368	2.334921e-49	3.570216e-47
MsaG027329	MsaG037635	0.817296	6.174358e-52	1.265616e-49
MsaG027970	MsaG037635	0.815406	1.626887e-51	3.177477e-49
MsaG028348	MsaG037635	0.813428	4.433019e-51	8.237790e-49
MsaG028931	MsaG037635	0.820689	1.053823e-52	2.360258e-50
MsaG030080	MsaG037635	0.834762	4.522368e-56	1.504164e-53
MsaG033125	MsaG037635	0.821642	6.371587e-53	1.463601e-50
MsaG034999	MsaG037635	0.819541	1.925040e-52	4.182578e-50
MsaG035300	MsaG037635	0.816516	9.221306e-52	1.852505e-49
MsaG036128	MsaG037635	0.803524	5.634162e-49	8.254418e-47
MsaG036529	MsaG037635	0.813085	5.268230e-51	9.706015e-49
MsaG036699	MsaG037635	0.806885	1.122917e-49	1.779419e-47
MsaG039591	MsaG037635	0.808564	4.958843e-50	8.180097e-48
MsaG041706	MsaG037635	0.814586	2.468874e-51	4.722807e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037635	MtrunA17_Chr6g0478701	86.061	165	23	0	5	169	4	168	1.06e-85	249
MsaG037635	MtrunA17_Chr2g0326811	85.455	165	24	0	5	169	4	168	4.51e-85	247

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037635	AT5G03500.3	74.847	163	41	5	167	4	166	1.74e-81	238
MsaG037635	AT5G03500.4	74.847	163	41	5	167	4	166	1.74e-81	238
MsaG037635	AT5G03500.2	74.847	163	41	5	167	4	166	1.74e-81	238
MsaG037635	AT5G03500.5	74.847	163	41	5	167	4	166	1.74e-81	238
MsaG037635	AT5G03500.7	74.847	163	41	5	167	4	166	1.74e-81	238
MsaG037635	AT5G03500.1	74.847	163	41	5	167	4	166	1.74e-81	238
MsaG037635	AT5G03500.6	74.847	163	41	5	167	14	176	2.92e-81	238
MsaG037635	AT5G03220.1	75.460	163	40	5	167	4	166	1.46e-74	221

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCAACATTGATTCATATTA+TGG	0.195694	7:-62035044	MsaT037635.1:CDS
TAGACTTTACAAATATTATT+TGG	0.223723	7:-62038121	MsaT037635.1:CDS
AGAACTGCAACTACACATTT+TGG	0.235567	7:-62035304	MsaT037635.1:CDS
CAAGGGACTTGCATTTGTTT+TGG	0.271921	7:-62038060	MsaT037635.1:CDS
GCAACACTCGATGACCATTA+AGG	0.341261	7:-62034100	None:intergenic
TGAATTGGCGGTGGAGGCTC+TGG	0.388357	7:+62038081	None:intergenic
TATTTGTAAAGTCTATAATA+AGG	0.399185	7:+62038129	None:intergenic
AAATTCATTGCATCCTCATC+AGG	0.403386	7:-62035190	MsaT037635.1:intron
CTATAATAAGGTGGTGGTGG+TGG	0.415430	7:+62038141	None:intergenic
CAAATGCAAGTCCCTTGAAT+TGG	0.416060	7:+62038066	None:intergenic
GATAGAGCTGGCGCACCCCT+TGG	0.428730	7:+62036185	None:intergenic
TGTCTTCTACGGCTTGTTTG+CGG	0.449632	7:+62035005	None:intergenic
GTCCCTTGAATTGGCGGTGG+AGG	0.451047	7:+62038075	None:intergenic
GAGCCTCCACCGCCAATTCA+AGG	0.453043	7:-62038078	MsaT037635.1:CDS
CGTACCAACATTCGGCCCCT+TGG	0.453104	7:+62036162	None:intergenic
ATACCTCTTTATGTCTTCTA+CGG	0.455805	7:+62034994	None:intergenic
AAAGATAGCGTACCAACATT+CGG	0.494584	7:+62036154	None:intergenic
GTACCAACATTCGGCCCCTT+GGG	0.495917	7:+62036163	None:intergenic
TATAATAAGGTGGTGGTGGT+GGG	0.505040	7:+62038142	None:intergenic
CAGCGACGTTCTACTAAGCT+TGG	0.509261	7:-62036212	MsaT037635.1:CDS
ATGCAAGTCCCTTGAATTGG+CGG	0.513484	7:+62038069	None:intergenic
AGTCTATAATAAGGTGGTGG+TGG	0.525802	7:+62038138	None:intergenic
ACTCTTCTTGCATACTGTGA+TGG	0.527495	7:+62035255	None:intergenic
AAGCCGTAGAAGACATAAAG+AGG	0.531060	7:-62034997	MsaT037635.1:intron
TCGGCCCCTTGGGATAGAGC+TGG	0.544781	7:+62036173	None:intergenic
TATCCCAAGGGGCCGAATGT+TGG	0.548924	7:-62036166	MsaT037635.1:intron
AGCCTCCACCGCCAATTCAA+GGG	0.558105	7:-62038077	MsaT037635.1:CDS
CAAGCTTAGTAGAACGTCGC+TGG	0.558886	7:+62036213	None:intergenic
CAAGTCCCTTGAATTGGCGG+TGG	0.561181	7:+62038072	None:intergenic
GTGCGCCAGCTCTATCCCAA+GGG	0.563669	7:-62036178	MsaT037635.1:CDS
CGTCTTTATATACCTTTGAG+TGG	0.567929	7:+62038934	None:intergenic
GGTGCGCCAGCTCTATCCCA+AGG	0.568670	7:-62036179	MsaT037635.1:CDS
AGAAGATTTAATACCTGATG+AGG	0.571874	7:+62035177	None:intergenic
TACTAAGCTTGGAAGACCAA+GGG	0.579399	7:-62036201	MsaT037635.1:CDS
TAAAGTCTATAATAAGGTGG+TGG	0.589868	7:+62038135	None:intergenic
TTGTAAAGTCTATAATAAGG+TGG	0.624502	7:+62038132	None:intergenic
CTACTAAGCTTGGAAGACCA+AGG	0.625337	7:-62036202	MsaT037635.1:CDS
TGCGCCAGCTCTATCCCAAG+GGG	0.660989	7:-62036177	MsaT037635.1:CDS
ACTAAGCTTGGAAGACCAAG+GGG	0.673301	7:-62036200	MsaT037635.1:CDS
TAGATTTCAAGAAGGAACTG+AGG	0.694233	7:-62035338	MsaT037635.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	62034102	62038959	62034102	ID=MsaG037635
Chr7	mRNA	62034102	62038959	62034102	ID=MsaT037635.1;Parent=MsaG037635
Chr7	exon	62034102	62034162	62034102	ID=MsaT037635.1.exon6;Parent=MsaT037635.1
Chr7	CDS	62034102	62034162	62034102	ID=cds.MsaT037635.1;Parent=MsaT037635.1
Chr7	exon	62034998	62035071	62034998	ID=MsaT037635.1.exon5;Parent=MsaT037635.1
Chr7	CDS	62034998	62035071	62034998	ID=cds.MsaT037635.1;Parent=MsaT037635.1
Chr7	exon	62035191	62035357	62035191	ID=MsaT037635.1.exon4;Parent=MsaT037635.1
Chr7	CDS	62035191	62035357	62035191	ID=cds.MsaT037635.1;Parent=MsaT037635.1
Chr7	exon	62036167	62036236	62036167	ID=MsaT037635.1.exon3;Parent=MsaT037635.1
Chr7	CDS	62036167	62036236	62036167	ID=cds.MsaT037635.1;Parent=MsaT037635.1
Chr7	exon	62038047	62038171	62038047	ID=MsaT037635.1.exon2;Parent=MsaT037635.1
Chr7	CDS	62038047	62038171	62038047	ID=cds.MsaT037635.1;Parent=MsaT037635.1
Chr7	exon	62038947	62038959	62038947	ID=MsaT037635.1.exon1;Parent=MsaT037635.1
Chr7	CDS	62038947	62038959	62038947	ID=cds.MsaT037635.1;Parent=MsaT037635.1

Gene Sequence

>MsaT037635.1

ATGCCACTCAAAGCAACATACCCACCACCACCACCTTATTATAGACTTTACAAATATTATTTGGAAGATTCTGAATCTTCTCCAGAGCCTCCACCGCCAATTCAAGGGACTTGCATTTGTTTTGGTGGAAGTTACACTACCAGCGACGTTCTACTAAGCTTGGAAGACCAAGGGGTGCGCCAGCTCTATCCCAAGGGGCCGAATGTTGATTTCAAGAAGGAACTGAGGTCACTTAATCGAGAACTGCAACTACACATTTTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAGTATGCAAGAAGAGTCGAAGAAGTTTCAACTTTATTCAAAAACTTGCATCATCTTTTAAATTCATTGCATCCTCATCAGGCAAGATCAACATTGATTCATATTATGGAACTTCAGATAGAGCGCCGCAAACAAGCCGTAGAAGACATAAAGAGGAGGAGAGAAGTAACTCGAAGACTTCTTAGCGAGTCTTTAGCAACACTCGATGACCATTAA

Protein sequence

>MsaT037635.1

MPLKATYPPPPPYYRLYKYYLEDSESSPEPPPPIQGTCICFGGSYTTSDVLLSLEDQGVRQLYPKGPNVDFKKELRSLNRELQLHILELADILIERPSQYARRVEEVSTLFKNLHHLLNSLHPHQARSTLIHIMELQIERRKQAVEDIKRRREVTRRLLSESLATLDDH*