AlfalfaGEDB | MsaG037638

M. sativa ssp. caerulea / MsaG037638

KEGG: K15148
GO: GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141
PFAM: PF05983.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037638	KAF3566759.1	66.443	149	24	1	1	123	1	149	1.60e-62	199

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037638	sp\|Q9LZD7\|MED7B_ARATH	68.456	149	21	1	1	123	1	149	1.20e-61	189

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037638	tr\|A0A6A6KNA0\|A0A6A6KNA0_HEVBR	67.722	158	25	1	1	132	1	158	6.47e-59	189

TFs/TRs:

Gene ID	Type	Classification
MsaG037638	TR	MED7

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037638	MtrunA17_Chr6g0478701	73.826	149	13	1	1	123	1	149	5.02e-56	172
MsaG037638	MtrunA17_Chr2g0326811	73.154	149	14	1	1	123	1	149	2.22e-55	171

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037638	AT5G03500.3	68.456	149	21	1	1	123	1	149	1.22e-62	189
MsaG037638	AT5G03500.4	68.456	149	21	1	1	123	1	149	1.22e-62	189
MsaG037638	AT5G03500.2	68.456	149	21	1	1	123	1	149	1.22e-62	189
MsaG037638	AT5G03500.5	68.456	149	21	1	1	123	1	149	1.22e-62	189
MsaG037638	AT5G03500.7	68.456	149	21	1	1	123	1	149	1.22e-62	189
MsaG037638	AT5G03500.1	68.456	149	21	1	1	123	1	149	1.22e-62	189
MsaG037638	AT5G03500.6	68.456	149	21	1	1	123	11	159	1.24e-62	189
MsaG037638	AT5G03220.1	68.456	149	21	1	1	123	1	149	2.84e-55	171

Find 28 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCAACATTGATTCATATTA+TGG	0.195694	7:-62064798	MsaT037638.1:CDS
TAGACTTTACAAATATTATT+TGG	0.223723	7:-62089449	MsaT037638.1:CDS
AGAACTGCAACTACACATTT+TGG	0.235567	7:-62065058	MsaT037638.1:CDS
GAAGGGACTTATATTTGTTT+TGG	0.300965	7:-62089388	MsaT037638.1:CDS
TCGATTGGCGGTGGAGGCTC+TGG	0.362896	7:+62089409	None:intergenic
TATTTGTAAAGTCTATAATA+AGG	0.399185	7:+62089457	None:intergenic
AAATTCATTGCATCCTCATC+AGG	0.403386	7:-62064944	MsaT037638.1:intron
CTATAATAAGGTGGTGGTGG+TGG	0.415430	7:+62089469	None:intergenic
TGTCTTCTACGGCTTGTTTG+CGG	0.449632	7:+62064759	None:intergenic
ATACCTCTTTATGTCTTCTA+CGG	0.455805	7:+62064748	None:intergenic
GTCCCTTCGATTGGCGGTGG+AGG	0.464706	7:+62089403	None:intergenic
GCAAGGACATTTCACTATGA+TGG	0.485863	7:+62064661	None:intergenic
GAGCCTCCACCGCCAATCGA+AGG	0.491154	7:-62089406	MsaT037638.1:CDS
TATAATAAGGTGGTGGTGGT+GGG	0.505040	7:+62089470	None:intergenic
CAAATATAAGTCCCTTCGAT+TGG	0.522975	7:+62089394	None:intergenic
AGTCTATAATAAGGTGGTGG+TGG	0.525802	7:+62089466	None:intergenic
ACTCTTCTTGCATACTGTGA+TGG	0.527495	7:+62065009	None:intergenic
AAGCCGTAGAAGACATAAAG+AGG	0.531060	7:-62064751	MsaT037638.1:intron
AGCCTCCACCGCCAATCGAA+GGG	0.535045	7:-62089405	MsaT037638.1:CDS
ATATAAGTCCCTTCGATTGG+CGG	0.542571	7:+62089397	None:intergenic
ATAAGAACAAAAGATTGCCT+AGG	0.554263	7:+62064685	None:intergenic
TAAGTCCCTTCGATTGGCGG+TGG	0.560515	7:+62089400	None:intergenic
TAAGAACAAAAGATTGCCTA+GGG	0.567732	7:+62064686	None:intergenic
AGAAGATTTAATACCTGATG+AGG	0.571874	7:+62064931	None:intergenic
CTTAATGGTACAGAAACCCT+AGG	0.581794	7:-62064702	MsaT037638.1:intron
TAAAGTCTATAATAAGGTGG+TGG	0.589868	7:+62089463	None:intergenic
TTGTAAAGTCTATAATAAGG+TGG	0.624502	7:+62089460	None:intergenic
TAGATTTCAAGAAGGAACTG+AGG	0.694233	7:-62065092	MsaT037638.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	62064675	62089509	62064675	ID=MsaG037638
Chr7	mRNA	62064675	62089509	62064675	ID=MsaT037638.1;Parent=MsaG037638
Chr7	exon	62064675	62064711	62064675	ID=MsaT037638.1.exon4;Parent=MsaT037638.1
Chr7	CDS	62064675	62064711	62064675	ID=cds.MsaT037638.1;Parent=MsaT037638.1
Chr7	exon	62064752	62064825	62064752	ID=MsaT037638.1.exon3;Parent=MsaT037638.1
Chr7	CDS	62064752	62064825	62064752	ID=cds.MsaT037638.1;Parent=MsaT037638.1
Chr7	exon	62064945	62065103	62064945	ID=MsaT037638.1.exon2;Parent=MsaT037638.1
Chr7	CDS	62064945	62065103	62064945	ID=cds.MsaT037638.1;Parent=MsaT037638.1
Chr7	exon	62089375	62089509	62089375	ID=MsaT037638.1.exon1;Parent=MsaT037638.1
Chr7	CDS	62089375	62089509	62089375	ID=cds.MsaT037638.1;Parent=MsaT037638.1

Gene Sequence

>MsaT037638.1

ATGGCAACAGCTACATACCCACCACCACCACCTTATTATAGACTTTACAAATATTATTTGGAAGATTCTGAATCTTCTCCAGAGCCTCCACCGCCAATCGAAGGGACTTATATTTGTTTTGGTGGAAATTATACGAAGGAACTGAGGTCACTTAATCGAGAACTGCAACTACACATTTTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAGTATGCAAGAAGAGTCGAAGAAGTTTCAACTTTATTCAAAAACTTGCATCATCTTTTAAATTCATTGCATCCTCATCAGGCAAGATCAACATTGATTCATATTATGGAACTTCAGATAGAGCGCCGCAAACAAGCCGTAGAAGACATAAAGAGAAACCCTAGGCAATCTTTTGTTCTTATGCCATCATAG

Protein sequence

>MsaT037638.1

MATATYPPPPPYYRLYKYYLEDSESSPEPPPPIEGTYICFGGNYTKELRSLNRELQLHILELADILIERPSQYARRVEEVSTLFKNLHHLLNSLHPHQARSTLIHIMELQIERRKQAVEDIKRNPRQSFVLMPS*