AlfalfaGEDB | MsaG037683

M. sativa ssp. caerulea / MsaG037683

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037683	XP_003623113.1	98.763	566	7	0	1	566	1	566	0.0	1156

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037683	sp\|Q6R032\|MB3R5_ARATH	49.911	563	198	17	3	539	19	523	3.22e-152	451

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037683	tr\|G7L4J7\|G7L4J7_MEDTR	98.763	566	7	0	1	566	1	566	0.0	1156

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037683	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037683	MtrunA17_Chr7g0238631	98.763	566	7	0	1	566	1	566	0.0	1156
MsaG037683	MtrunA17_Chr1g0157731	77.143	175	39	1	50	223	27	201	6.88e-91	300
MsaG037683	MtrunA17_Chr3g0139671	72.043	186	50	2	50	234	21	205	5.91e-90	296
MsaG037683	MtrunA17_Chr5g0397841	35.337	416	229	10	46	451	40	425	7.00e-61	209
MsaG037683	MtrunA17_Chr4g0058991	66.019	103	35	0	111	213	207	309	1.50e-40	153
MsaG037683	MtrunA17_Chr4g0058991	35.714	112	68	2	47	155	192	302	1.54e-13	73.2
MsaG037683	MtrunA17_Chr3g0117511	64.078	103	37	0	111	213	181	283	2.33e-40	152
MsaG037683	MtrunA17_Chr3g0117511	37.000	100	62	1	57	156	179	277	2.77e-13	72.0
MsaG037683	MtrunA17_Chr5g0429661	62.136	103	39	0	111	213	120	222	2.38e-40	150
MsaG037683	MtrunA17_Chr5g0429661	37.895	95	58	1	61	155	122	215	3.08e-13	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037683	AT5G02320.1	49.911	563	198	17	3	539	19	523	3.27e-153	451
MsaG037683	AT5G02320.2	49.911	563	198	17	3	539	19	523	3.27e-153	451
MsaG037683	AT5G02320.3	50.097	515	175	16	51	539	5	463	2.32e-138	410
MsaG037683	AT3G09370.2	64.803	304	95	5	3	302	24	319	1.56e-125	378
MsaG037683	AT3G09370.2	38.298	141	68	6	410	545	372	498	2.34e-14	76.3
MsaG037683	AT3G09370.1	64.803	304	95	5	3	302	19	314	1.78e-125	378
MsaG037683	AT3G09370.1	38.298	141	68	6	410	545	367	493	2.70e-14	75.9
MsaG037683	AT3G09370.3	64.474	304	96	5	3	302	32	327	4.73e-125	377
MsaG037683	AT3G09370.3	38.298	141	68	6	410	545	380	506	2.45e-14	76.3
MsaG037683	AT5G11510.5	72.571	175	47	1	50	223	17	191	2.46e-89	292

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Find 127 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGAAATAGTAGTAG+CGG	0.596376	7:+63051078	MsaT037683.1:CDS
AAAGAAGGATGCCTGGACTT+TGG	0.449362	7:+63049733	MsaT037683.1:CDS
AAATGAGAAATAGTAGTAGC+GGG	0.550717	7:+63051079	MsaT037683.1:CDS
AACAAACATTACCGATGTGA+AGG	0.591884	7:-63047017	None:intergenic
AACACTCGCTCTCTGTGGAG+TGG	0.630623	7:-63051256	None:intergenic
AACTTCTCTAGCTGTTCCTG+AGG	0.608591	7:-63050854	None:intergenic
AAGAATCAGTTTGAGTCCTC+AGG	0.514180	7:+63050838	MsaT037683.1:CDS
AAGAGAAGAATGATGACAAC+AGG	0.464428	7:+63051610	MsaT037683.1:CDS
AAGTCTTTGCCTGGTCGAAT+AGG	0.367993	7:+63049422	MsaT037683.1:CDS
AAGTTCAATGTCTGCACAGA+TGG	0.487051	7:+63049207	MsaT037683.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	63046876	63051713	63046876	ID=MsaG037683
Chr7	mRNA	63046876	63051713	63046876	ID=MsaT037683.1;Parent=MsaG037683
Chr7	exon	63046876	63047027	63046876	ID=MsaT037683.1.exon1;Parent=MsaT037683.1
Chr7	CDS	63046876	63047027	63046876	ID=cds.MsaT037683.1;Parent=MsaT037683.1
Chr7	exon	63047242	63047293	63047242	ID=MsaT037683.1.exon2;Parent=MsaT037683.1
Chr7	CDS	63047242	63047293	63047242	ID=cds.MsaT037683.1;Parent=MsaT037683.1
Chr7	exon	63047462	63047519	63047462	ID=MsaT037683.1.exon3;Parent=MsaT037683.1
Chr7	CDS	63047462	63047519	63047462	ID=cds.MsaT037683.1;Parent=MsaT037683.1
Chr7	exon	63049183	63049277	63049183	ID=MsaT037683.1.exon4;Parent=MsaT037683.1
Chr7	CDS	63049183	63049277	63049183	ID=cds.MsaT037683.1;Parent=MsaT037683.1
Chr7	exon	63049359	63049462	63049359	ID=MsaT037683.1.exon5;Parent=MsaT037683.1
Chr7	CDS	63049359	63049462	63049359	ID=cds.MsaT037683.1;Parent=MsaT037683.1
Chr7	exon	63049706	63049834	63049706	ID=MsaT037683.1.exon6;Parent=MsaT037683.1
Chr7	CDS	63049706	63049834	63049706	ID=cds.MsaT037683.1;Parent=MsaT037683.1
Chr7	exon	63050603	63051713	63050603	ID=MsaT037683.1.exon7;Parent=MsaT037683.1
Chr7	CDS	63050603	63051713	63050603	ID=cds.MsaT037683.1;Parent=MsaT037683.1

Gene Sequence

>MsaT037683.1

ATGGATGAGTTTGAATCAGAGGTTTGTTGTTTGGAGAATAAACAATCAACTGTTGCTTCTTGCTCATCTGTGTCTGAAGGCAGTGATAGTATAATTCAAAAGTCTCCTGGGATATGTAGCCCCACGGCTACATCGACTTCGCCTTCACATCGGAGGACAACAGGTCCTATAAGGCGCGCTAAGGGTGGTTGGACAGCAGAGGAGGATGAGACATTAAGGAATGCCGTTGCAGCTTTTAAGGGAAAGCATTGGAAAAAAATAGCTGAGTTTTTTGCTGATAGATCAGAAGTTCAATGTCTGCACAGATGGCAAAAAGTTCTCAATCCAGAACTTGTTAAGGGACCATGGACACAGGAGGAGGATGATAAAATTGTTGAACTGGTGGCAAAATATGGGCCTACAAAATGGTCCTTGATTGCCAAGTCTTTGCCTGGTCGAATAGGGAAACAGTGTCGAGAAAGGTGGCACAATCATCTTAATCCTGATATAAAGAAGGATGCCTGGACTTTGGAAGAGGAACTAGCCTTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCTTTGAAGAAGAAGTTAGATTTCTACTTAGCCACAGGAAAACTTCCACCAATTCCAAAAAGCAATCCACTAGTTGCTGCCAAAGATACAATTAAACGTTCTGCTTCTAAAACAATACTTGTTTCATCTAATAAAGAACTACATGTGGCTGTTGAAGCATCGTCTGAAACTACAGCCATTAGTAAGCCAGATGACAGTGGCAAGAATCAGTTTGAGTCCTCAGGAACAGCTAGAGAAGTTGGTGATTCTTCAAGTCTCCCGGCAAATGAATCTGCTGATTCTGACTGTGTTGAAGGCAAGCCTGGACCATCCAATGTTGATCTCAGCTGTGGAAACTCAGAGCATGTATCAAGAGCTAATTTTGGAACAACTTACGGGCCGAAATATGAGAACTCTGCACTCAATGGAAACTCAATAACTGAGCATTGTTTAAACAATGGTAAAATGAGAAATAGTAGTAGCGGGTTAATCAGGACATCTACTCAAGAAAATCAGACTTGTGGTTCTTTGTGTTACGAGCCGCCACTTTTAGCTGGTTCAGTTCCTTTAGATTCTCTTCATTTAAGTATTCTCTGCATGCAGAATGATTACTGTTCTAAGTTGTCACCCATTGGTTACACCACTCCACAGAGAGCGAGTGTTAGTGAATTATGTACGGAGACCCCTGAATCTATATTGAGAAAGGCTGCTAATACTTATCCAAATACTCCTTCCATATTTAGGAGGAGAAGAACTGGAGTCCAACCACTAACTTCTCCTAGTAAAGTTTTAAAAGTCGACAATGATTCACATGCTTCTAATGAACCATATAGAACCAAGAATAATTCTGATTCTGAAGCTCAGACATTGGCTGAGAGTCCCGCAAGCCGTGACAATAATAAGGCTTTCAATGCATCGCCGCCATACCGGTTAAGAACCAAACGGACAGCAGTTGTCAAGTCTGTGGAGAAACAACTTGAGTTTGCGTTTGACAAAGAGAAGAATGATGACAACAGGAGTGCAATGGAAAAATCTACAAAGAGGAGCAATGTTATGACTGAGGATCGTCTGCATGAAAGAAAATTGGTAGCAACGTAG

Protein sequence

>MsaT037683.1

MDEFESEVCCLENKQSTVASCSSVSEGSDSIIQKSPGICSPTATSTSPSHRRTTGPIRRAKGGWTAEEDETLRNAVAAFKGKHWKKIAEFFADRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVAKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGKLPPIPKSNPLVAAKDTIKRSASKTILVSSNKELHVAVEASSETTAISKPDDSGKNQFESSGTAREVGDSSSLPANESADSDCVEGKPGPSNVDLSCGNSEHVSRANFGTTYGPKYENSALNGNSITEHCLNNGKMRNSSSGLIRTSTQENQTCGSLCYEPPLLAGSVPLDSLHLSILCMQNDYCSKLSPIGYTTPQRASVSELCTETPESILRKAANTYPNTPSIFRRRRTGVQPLTSPSKVLKVDNDSHASNEPYRTKNNSDSEAQTLAESPASRDNNKAFNASPPYRLRTKRTAVVKSVEKQLEFAFDKEKNDDNRSAMEKSTKRSNVMTEDRLHERKLVAT*