AlfalfaGEDB | MsaG037698

M. sativa ssp. caerulea / MsaG037698

KEGG: K18753
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037698	XP_013470126.1	95.000	80	4	0	1	80	266	345	3.11e-53	179

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037698	sp\|Q9C9F5\|C3H15_ARATH	86.842	76	10	0	3	78	217	292	8.49e-48	156

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037698	tr\|A0A072VQ63\|A0A072VQ63_MEDTR	95.000	80	4	0	1	80	266	345	1.48e-53	179

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037698	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037698	MtrunA17_Chr1g0209041	95.000	80	4	0	1	80	266	345	2.86e-57	179
MsaG037698	MtrunA17_Chr5g0442111	81.333	75	5	1	7	81	24	89	1.71e-38	123

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037698	AT1G68200.2	86.842	76	10	3	78	216	291	8.15e-49	156
MsaG037698	AT1G68200.6	86.842	76	10	3	78	216	291	8.15e-49	156
MsaG037698	AT1G68200.1	86.842	76	10	3	78	217	292	8.63e-49	156
MsaG037698	AT1G68200.5	86.842	76	10	3	78	217	292	8.63e-49	156
MsaG037698	AT1G66810.1	75.641	78	19	3	80	227	304	1.52e-42	140
MsaG037698	AT1G66810.3	75.641	78	19	3	80	227	304	1.52e-42	140

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Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGCATCCATGGCCATA+CGG	0.489067	7:-63365637	None:intergenic
AATGGCATCCATGGCCATAC+GGG	0.535690	7:-63365636	None:intergenic
AATTTACAGTGGTCTCCATA+AGG	0.465847	7:-63365523	None:intergenic
ACGGGCACACAACCCCAGCA+AGG	0.626804	7:-63365618	None:intergenic
AGACTGAGCTCTGTAACAAA+TGG	0.531908	7:+63365482	MsaT037698.1:CDS
AGATGGTTGTGTACAACCAG+GGG	0.741581	7:+63365452	None:intergenic
AGCGAGGGTGGCGGATCATT+GGG	0.415785	7:-63365570	None:intergenic
ATTTACAGTGGTCTCCATAA+GGG	0.527756	7:-63365522	None:intergenic
CAAAACTGAGGTCTGCAGGA+TGG	0.616724	7:+63365594	MsaT037698.1:CDS
CAGTAAGTGCATGACGGAAA+TGG	0.414882	7:-63365654	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	63365454	63365702	63365454	ID=MsaG037698
Chr7	mRNA	63365454	63365702	63365454	ID=MsaT037698.1;Parent=MsaG037698
Chr7	exon	63365454	63365702	63365454	ID=MsaT037698.1.exon1;Parent=MsaT037698.1
Chr7	CDS	63365454	63365702	63365454	ID=cds.MsaT037698.1;Parent=MsaT037698.1

Gene Sequence	>MsaT037698.1 ATGGTTGTGTACAACCAGGGGATGTTCAAGACTGAGCTCTGTAACAAATGGCAGGAAACTGGCACATGCCCTTATGGAGACCACTGTAAATTCGCTCACGACATTGGGGAGCTTCGCCCAATGATCCGCCACCCTCGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCGTATGGCCATGGATGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTATGTTTTGTTGA
Protein sequence	>MsaT037698.1 MVVYNQGMFKTELCNKWQETGTCPYGDHCKFAHDIGELRPMIRHPRYKTEVCRMVLAGVVCPYGHGCHFRHALTEQEKAMFC*