AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG037734


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG037734 MtrunA17_Chr7g0238891 95.693 743 31 1 1 743 1 742 0.0 1455
MsaG037734 MtrunA17_Chr4g0031721 48.692 688 326 8 61 743 21 686 0.0 618
MsaG037734 MtrunA17_Chr4g0031711 44.770 717 337 17 40 743 65 735 0.0 547
MsaG037734 MtrunA17_Chr2g0328411 44.362 674 307 12 69 740 46 653 0.0 541
MsaG037734 MtrunA17_Chr2g0328431 43.465 681 309 12 69 743 46 656 0.0 533
MsaG037734 MtrunA17_Chr4g0031701 43.842 682 299 17 67 743 26 628 2.73e-179 526
MsaG037734 MtrunA17_Chr4g0031741 51.938 516 232 6 238 743 143 652 8.53e-176 518
MsaG037734 MtrunA17_Chr4g0031731 42.962 682 305 16 67 743 26 628 1.44e-174 514
MsaG037734 MtrunA17_Chr2g0328391 49.084 546 246 7 221 743 135 671 4.42e-174 514
MsaG037734 MtrunA17_Chr2g0328401 42.750 669 298 16 64 721 41 635 6.73e-167 495
MsaG037734 MtrunA17_Chr2g0328341 51.079 417 193 5 334 743 228 640 3.54e-153 460
MsaG037734 MtrunA17_Chr2g0328381 50.597 419 196 5 332 743 229 643 5.89e-149 449
MsaG037734 MtrunA17_Chr2g0328361 48.086 418 183 6 332 743 228 617 8.24e-134 409
MsaG037734 MtrunA17_Chr2g0328371 55.020 249 107 2 444 691 2 246 5.29e-96 298
MsaG037734 MtrunA17_Chr5g0447691 32.976 373 249 1 369 741 173 544 8.19e-66 228
MsaG037734 MtrunA17_Chr2g0290241 29.867 375 261 2 368 741 52 425 1.33e-60 210
MsaG037734 MtrunA17_Chr1g0159461 32.075 371 251 1 371 741 223 592 4.23e-60 213
MsaG037734 MtrunA17_Chr4g0076091 30.481 374 258 2 368 740 170 542 9.73e-60 211
MsaG037734 MtrunA17_Chr3g0101141 30.053 376 256 4 369 741 171 542 5.70e-59 209
MsaG037734 MtrunA17_Chr2g0319091 30.914 372 256 1 369 740 208 578 1.46e-58 208
MsaG037734 MtrunA17_Chr7g0224271 29.684 475 286 10 284 741 230 673 5.65e-58 209
MsaG037734 MtrunA17_Chr5g0445331 29.949 394 262 7 358 741 143 532 1.70e-56 202
MsaG037734 MtrunA17_Chr3g0125811 29.919 371 259 1 371 741 201 570 3.25e-55 199
MsaG037734 MtrunA17_Chr4g0057891 29.351 385 249 6 370 741 146 520 1.36e-49 182
MsaG037734 MtrunA17_Chr8g0376381 33.594 384 224 11 368 743 164 524 4.68e-49 181
MsaG037734 MtrunA17_Chr7g0245601 30.055 366 242 5 377 742 442 793 6.98e-48 181
MsaG037734 MtrunA17_Chr3g0110971 30.612 392 236 8 368 741 214 587 7.39e-48 179
MsaG037734 MtrunA17_Chr2g0306641 30.990 384 239 8 368 741 120 487 1.39e-46 173
MsaG037734 MtrunA17_Chr8g0357601 30.075 399 245 8 363 743 172 554 7.00e-46 172
MsaG037734 MtrunA17_Chr4g0038851 26.402 428 250 4 373 741 48 469 4.50e-44 165
MsaG037734 MtrunA17_Chr3g0085681 27.446 419 245 7 374 741 26 436 2.00e-41 157
MsaG037734 MtrunA17_Chr4g0038761 28.307 378 239 9 377 743 88 444 1.59e-38 149
MsaG037734 MtrunA17_Chr4g0057291 25.455 385 267 7 369 742 288 663 9.00e-37 147
MsaG037734 MtrunA17_Chr2g0294461 26.650 394 264 9 364 741 201 585 2.06e-36 145
MsaG037734 MtrunA17_Chr7g0270031 29.306 389 242 10 368 741 184 554 1.18e-35 142
MsaG037734 MtrunA17_Chr1g0183641 27.033 418 265 14 343 740 79 476 9.20e-35 138
MsaG037734 MtrunA17_Chr1g0200401 27.889 398 240 14 373 741 80 459 4.07e-34 136
MsaG037734 MtrunA17_Chr2g0294471 25.641 390 270 8 364 741 195 576 2.34e-32 132
MsaG037734 MtrunA17_Chr5g0401131 26.494 385 261 6 373 742 114 491 6.76e-32 130
MsaG037734 MtrunA17_Chr1g0194621 26.410 390 259 13 368 741 141 518 2.99e-31 129
MsaG037734 MtrunA17_Chr4g0039661 26.836 354 241 8 392 741 216 555 3.87e-31 129
MsaG037734 MtrunA17_Chr3g0085361 25.698 358 209 5 433 741 1 350 9.36e-29 118
MsaG037734 MtrunA17_Chr3g0114841 27.688 372 229 10 392 740 145 499 1.66e-27 117
MsaG037734 MtrunA17_Chr7g0236851 24.543 383 252 9 374 740 295 656 1.22e-26 115
MsaG037734 MtrunA17_Chr5g0396491 30.556 216 140 3 373 584 56 265 9.43e-26 111
MsaG037734 MtrunA17_Chr5g0396491 29.252 147 104 0 595 741 332 478 1.58e-16 83.2
MsaG037734 MtrunA17_Chr6g0468561 24.084 382 261 11 374 741 296 662 6.83e-24 107
MsaG037734 MtrunA17_Chr5g0424131 24.750 400 255 12 370 740 116 498 1.22e-23 105
MsaG037734 MtrunA17_Chr2g0329591 27.667 300 203 5 373 667 74 364 1.97e-23 104
MsaG037734 MtrunA17_Chr4g0053901 24.048 420 268 10 370 743 56 470 5.04e-23 103
MsaG037734 MtrunA17_Chr5g0401421 21.667 420 280 8 370 743 32 448 5.34e-23 102
MsaG037734 MtrunA17_Chr8g0383981 26.000 400 251 16 361 743 127 498 6.11e-23 103
MsaG037734 MtrunA17_Chr8g0344101 24.107 448 284 15 321 741 182 600 6.59e-18 88.2
MsaG037734 MtrunA17_Chr7g0230731 22.487 378 261 6 374 741 373 728 4.25e-17 85.9
MsaG037734 MtrunA17_Chr7g0230771 21.958 378 263 6 374 741 376 731 1.42e-15 80.9
MsaG037734 MtrunA17_Chr4g0012071 20.976 410 274 11 349 741 175 551 5.86e-15 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG037734 AT2G37650.2 52.104 689 268 12 69 742 61 702 0.0 659
MsaG037734 AT2G37650.1 52.104 689 268 12 69 742 73 714 0.0 659
MsaG037734 AT1G07530.1 45.408 773 373 16 8 743 7 767 0.0 609
MsaG037734 AT2G29060.2 44.262 732 304 17 23 742 17 656 0.0 562
MsaG037734 AT2G29060.1 46.356 686 310 15 70 742 53 693 0.0 561
MsaG037734 AT2G29065.1 45.754 577 269 10 179 743 86 630 2.14e-159 476
MsaG037734 AT1G07520.1 40.426 705 352 16 53 743 45 695 1.91e-156 470
MsaG037734 AT1G07520.3 40.426 705 352 16 53 743 46 696 2.93e-156 470
MsaG037734 AT1G07520.2 45.668 554 254 12 204 743 11 531 2.67e-152 454
MsaG037734 AT1G07520.4 45.668 554 254 12 204 743 11 531 2.67e-152 454
MsaG037734 AT5G59450.1 46.934 473 238 5 276 743 136 600 3.99e-152 456
MsaG037734 AT3G46600.1 51.629 399 190 2 347 743 184 581 2.17e-142 430
MsaG037734 AT3G46600.1 41.837 98 48 2 43 131 19 116 4.17e-11 66.6
MsaG037734 AT3G46600.3 51.629 399 190 2 347 743 152 549 3.00e-142 429
MsaG037734 AT3G46600.2 52.941 374 175 1 370 743 1 373 1.74e-140 418
MsaG037734 AT4G17230.1 33.600 375 248 1 368 742 153 526 9.45e-64 222
MsaG037734 AT4G17230.2 33.600 375 248 1 368 742 153 526 9.45e-64 222
MsaG037734 AT1G50600.3 33.244 373 248 1 369 741 155 526 2.70e-63 221
MsaG037734 AT5G48150.1 31.818 374 253 2 369 741 118 490 1.27e-62 218
MsaG037734 AT5G48150.4 31.818 374 253 2 369 741 118 490 1.27e-62 218
MsaG037734 AT5G48150.2 31.818 374 253 2 369 741 118 490 1.27e-62 218
MsaG037734 AT5G48150.3 31.818 374 253 2 369 741 118 490 1.27e-62 218
MsaG037734 AT1G50600.1 33.244 373 248 1 369 741 226 597 1.36e-62 220
MsaG037734 AT1G50600.2 33.244 373 248 1 369 741 230 601 1.96e-62 220
MsaG037734 AT2G04890.1 31.099 373 249 2 369 741 49 413 2.45e-60 209
MsaG037734 AT1G21450.1 29.765 383 260 4 365 741 214 593 7.17e-54 196
MsaG037734 AT1G14920.1 32.987 385 225 11 368 741 167 529 1.97e-49 182
MsaG037734 AT3G03450.1 31.362 389 235 9 368 743 178 547 6.45e-49 181
MsaG037734 AT3G54220.1 29.952 414 270 7 335 742 252 651 1.97e-48 182
MsaG037734 AT1G66350.1 32.615 371 227 10 374 741 156 506 7.07e-47 174
MsaG037734 AT2G01570.1 31.771 384 231 12 368 741 219 581 1.96e-46 175
MsaG037734 AT5G17490.1 29.744 390 234 10 368 743 155 518 2.55e-44 167
MsaG037734 AT1G50420.1 24.942 429 256 5 373 741 57 479 2.15e-42 161
MsaG037734 AT5G66770.1 27.224 371 254 8 377 741 224 584 4.47e-40 156
MsaG037734 AT5G41920.1 28.205 390 251 9 361 741 31 400 2.50e-36 142
MsaG037734 AT4G37650.1 25.255 392 266 8 372 742 145 530 2.61e-35 141
MsaG037734 AT3G50650.1 25.070 355 249 5 395 741 197 542 3.50e-32 132
MsaG037734 AT5G52510.1 24.611 386 265 7 371 741 266 640 3.80e-32 133
MsaG037734 AT1G63100.1 27.217 327 226 5 369 691 248 566 2.22e-31 130
MsaG037734 AT1G63100.2 27.217 327 226 5 369 691 273 591 2.43e-31 130
MsaG037734 AT1G55580.1 24.879 414 260 9 370 741 41 445 3.88e-27 115
MsaG037734 AT3G49950.1 26.531 392 260 10 370 742 27 409 8.02e-24 105
MsaG037734 AT4G08250.1 25.581 387 260 12 370 740 102 476 9.46e-21 96.7
MsaG037734 AT3G13840.1 24.760 416 269 14 345 741 120 510 3.64e-19 92.0

Find 149 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCTTAAAGGGTATTT+TGG 0.117928 7:+64190185 MsaT037734.1:CDS
TGATTAGTCCTTTATAAATT+TGG 0.135271 7:-64191456 None:intergenic
TTCATTCACGGTATTGTTAA+TGG 0.176706 7:+64191991 MsaT037734.1:CDS
CTTTCTTTGTTACTCGATTT+AGG 0.193366 7:+64192028 MsaT037734.1:CDS
ACCTTGCAGCTTGCCCTTTC+CGG 0.197040 7:+64191524 MsaT037734.1:CDS
GTTTCCGCGCAAAGAATTAT+TGG 0.201496 7:-64190651 None:intergenic
TTTGATCAAAGTATAGAATT+TGG 0.228289 7:+64190281 MsaT037734.1:CDS
ACTTTCCACAACCTGGTTTC+AGG 0.235016 7:+64191716 MsaT037734.1:CDS
TTTCTTTGTTACTCGATTTA+GGG 0.239290 7:+64192029 MsaT037734.1:CDS
ATGATGGATCAAAATCTTAA+AGG 0.262809 7:+64190176 MsaT037734.1:CDS
AACAAAGAAAGGAGCATTAA+AGG 0.262853 7:-64192016 None:intergenic
CAGAATCAAAGATTTGAAAA+TGG 0.277754 7:+64190254 MsaT037734.1:CDS
ATAGACTTTGGTATCCTCTA+TGG 0.301006 7:+64191616 MsaT037734.1:CDS
ACGTTCCTGCTTCATAGTTT+AGG 0.305136 7:+64191115 MsaT037734.1:CDS
CATCCTTATGGAAGAAGATA+TGG 0.310452 7:+64190424 MsaT037734.1:CDS
GCTAATAAGTTTCTCCCTAA+TGG 0.314940 7:+64190863 MsaT037734.1:CDS
GAAAGAGGCCATTTCCATTA+GGG 0.330219 7:-64190877 None:intergenic
AGACAGCACTCAAACCCTTT+TGG 0.339731 7:+64191364 MsaT037734.1:CDS
CGATGGCCTTGAGGCACGTT+TGG 0.343289 7:+64191420 MsaT037734.1:CDS
TGAAAGAGGCCATTTCCATT+AGG 0.351396 7:-64190878 None:intergenic
AATCTTTGATTCTGAAGAAC+AGG 0.366185 7:-64190245 None:intergenic
ATACCGTGAATGAATATATT+CGG 0.372722 7:-64191982 None:intergenic
TTACCGTGGTAGAAACTTGC+TGG 0.375708 7:+64191897 MsaT037734.1:CDS
TTACATCAATAACATCCTTA+TGG 0.377855 7:+64190412 MsaT037734.1:CDS
TATCGTGCCTCGCGAGGATT+GGG 0.380868 7:+64192095 MsaT037734.1:CDS
CTTCCATATCTTCTTCCATA+AGG 0.384242 7:-64190427 None:intergenic
AAGTACCCGGTTTCGCCGTT+AGG 0.384939 7:+64190524 MsaT037734.1:CDS
TTTCCTTGAAAATCATTATG+AGG 0.391556 7:-64190692 None:intergenic
GGCCTTGAGGCACGTTTGGC+TGG 0.393996 7:+64191424 MsaT037734.1:CDS
CGAAGCTTCGGCGGTCCTCC+TGG 0.394399 7:-64191679 None:intergenic
ACAGGAAGCCAAATTTATAA+AGG 0.398179 7:+64191448 MsaT037734.1:CDS
TGATGGATCAAAATCTTAAA+GGG 0.398790 7:+64190177 MsaT037734.1:CDS
CAGGAGGACCGCCGAAGCTT+CGG 0.404967 7:+64191680 MsaT037734.1:CDS
TCGTTTACGCACTTTCTTGT+TGG 0.408613 7:+64192373 MsaT037734.1:CDS
AGACAAAACTAGTCATCTTC+CGG 0.409694 7:-64191543 None:intergenic
GCAAAGATTGATTCCTCAAC+TGG 0.410610 7:-64190223 None:intergenic
CGCTGATTTCCATCTCCAAA+AGG 0.411695 7:-64191379 None:intergenic
TGCCATTGCCTGTATGTCTC+TGG 0.414792 7:-64192201 None:intergenic
GTTTCATTACTAAGACTTTG+AGG 0.422355 7:-64190551 None:intergenic
GTGTGGATGCTTCCTTCCCT+TGG 0.423324 7:-64191005 None:intergenic
AAGTTTCTCCCTAATGGAAA+TGG 0.436441 7:+64190869 MsaT037734.1:CDS
ATTGTTGCGTTCAACTATGA+TGG 0.440086 7:+64191090 MsaT037734.1:CDS
CAATCTTGAGTTCCTCAAGC+TGG 0.440153 7:-64191843 None:intergenic
GCTATGGCATTATACTCAAA+TGG 0.441312 7:-64191802 None:intergenic
GTATCGTGCCTCGCGAGGAT+TGG 0.444992 7:+64192094 MsaT037734.1:CDS
TATAGAAACCGGTTCGCGCT+TGG 0.446581 7:+64191753 MsaT037734.1:CDS
TAGAGAGGCCAGAGACATAC+AGG 0.447934 7:+64192193 MsaT037734.1:CDS
GAGGCACGTTTGGCTGGTAC+AGG 0.458499 7:+64191430 MsaT037734.1:CDS
TTCTCCAGACAGTGATCTAC+AGG 0.458533 7:+64190781 MsaT037734.1:CDS
AAAGAGCAGTGGAGAAAGTA+AGG 0.458900 7:+64192280 MsaT037734.1:CDS
GACTATCTTAGTTGTCAAGC+AGG 0.459173 7:-64192399 None:intergenic
AGGGTCCATGTTATAGACTT+TGG 0.460977 7:+64191604 MsaT037734.1:CDS
TTCTTTGCGCGGAAACTTGA+GGG 0.461428 7:+64190658 MsaT037734.1:CDS
GAACGATGAACTATCGGTTA+AGG 0.463056 7:+64190946 MsaT037734.1:CDS
AAATCCTCAGTTTGATAAGA+AGG 0.464246 7:+64191953 MsaT037734.1:CDS
AACTAGTCATCTTCCGGAAA+GGG 0.465913 7:-64191537 None:intergenic
ATACGCTGCCAAGCGCGAAC+CGG 0.466569 7:-64191761 None:intergenic
ATCGAGGTCGTTGTTGAAGA+AGG 0.474514 7:-64190332 None:intergenic
CTAAATCGAGTAACAAAGAA+AGG 0.477974 7:-64192027 None:intergenic
GTAGCTTTCGATGTATTACT+TGG 0.479635 7:-64191205 None:intergenic
AAGTACTGTCGAAGGGACTC+TGG 0.480145 7:+64190757 MsaT037734.1:CDS
CCGCCGAAGCTTCGGATCAC+AGG 0.484533 7:+64191688 MsaT037734.1:CDS
ATTCCTGTGATCCGAAGCTT+CGG 0.485373 7:-64191691 None:intergenic
GGTTATTACAAGGTTGGAAA+GGG 0.487158 7:+64192346 MsaT037734.1:CDS
GCAAGTGGTTATTACAAGGT+TGG 0.488276 7:+64192340 MsaT037734.1:CDS
GTTTCTATAATTCTCTCTGC+AGG 0.493560 7:-64191739 None:intergenic
GAAAGTCTTTGTATGAAAGT+AGG 0.500451 7:-64191649 None:intergenic
CATCGAAAGCTACGACTAGT+AGG 0.501175 7:+64191215 MsaT037734.1:CDS
CTCTCTGCAGGCCTGAAACC+AGG 0.501776 7:-64191727 None:intergenic
GTTGAAGAAGGTGTGCAATC+AGG 0.502708 7:-64190320 None:intergenic
CAAATTCGTATTCTTAGAGC+CGG 0.503523 7:+64192222 MsaT037734.1:CDS
TTTGTATGAAAGTAGGCCAT+TGG 0.503852 7:-64191642 None:intergenic
AAACCGAATATATTCATTCA+CGG 0.506223 7:+64191979 MsaT037734.1:CDS
GTATCCTCTATGGTTTCCAA+TGG 0.508744 7:+64191626 MsaT037734.1:CDS
GCAGAGAGAATTATAGAAAC+CGG 0.512723 7:+64191742 MsaT037734.1:CDS
ATTCTTTGCGCGGAAACTTG+AGG 0.514689 7:+64190657 MsaT037734.1:CDS
TGGTTATTACAAGGTTGGAA+AGG 0.521643 7:+64192345 MsaT037734.1:CDS
GCAGGCCTGAAACCAGGTTG+TGG 0.523298 7:-64191721 None:intergenic
GCTGATTTCCATCTCCAAAA+GGG 0.524319 7:-64191378 None:intergenic
TAAGGAAGAGAAGGATGAGA+GGG 0.527324 7:+64190964 MsaT037734.1:CDS
AGCTTGTGAAGGTTGTGAGA+GGG 0.527661 7:+64192170 MsaT037734.1:CDS
CATCTCCTAAACTATGAAGC+AGG 0.528029 7:-64191120 None:intergenic
GAAACCTGTAGATCACTGTC+TGG 0.531985 7:-64190785 None:intergenic
GGAATAGACTTTCCACAACC+TGG 0.535328 7:+64191709 MsaT037734.1:CDS
TCAGAAAATTCACACTCCTC+AGG 0.542538 7:-64190377 None:intergenic
GATAGCAAGTGGTTATTACA+AGG 0.548641 7:+64192336 MsaT037734.1:CDS
CTGTGGTAGTCGACAGTCCA+AGG 0.548946 7:+64191926 MsaT037734.1:CDS
TATGGTACTTGTGTTGATGA+TGG 0.553757 7:+64190608 MsaT037734.1:CDS
TTGGCTCATATATTTGCCGA+TGG 0.554111 7:+64191403 MsaT037734.1:CDS
AATTCACACTCCTCAGGAGA+AGG 0.554993 7:-64190371 None:intergenic
TTAAGGAAGAGAAGGATGAG+AGG 0.555592 7:+64190963 MsaT037734.1:CDS
TGAAAGTATCGTGCCTCGCG+AGG 0.557299 7:+64192089 MsaT037734.1:CDS
TGGAGATGGAAATCAGCGGT+TGG 0.560835 7:+64191384 MsaT037734.1:CDS
CTTGAGTTCCTCAAGCTGGA+TGG 0.564439 7:-64191839 None:intergenic
AAGCTACGACTAGTAGGAAA+GGG 0.568799 7:+64191221 MsaT037734.1:CDS
AGTGATGAACGATGAACTAT+CGG 0.570283 7:+64190940 MsaT037734.1:CDS
TGTTCTTTGTGCACAAGCTG+TGG 0.571979 7:+64191297 MsaT037734.1:CDS
AAACTAGTCATCTTCCGGAA+AGG 0.572499 7:-64191538 None:intergenic
CTCCACTGCTCTTTCTACCG+TGG 0.574565 7:-64192271 None:intergenic
GGCCAGAGACATACAGGCAA+TGG 0.575120 7:+64192199 MsaT037734.1:CDS
TCCGGAAAGGGCAAGCTGCA+AGG 0.577684 7:-64191525 None:intergenic
TTCCTCATGTGTCGAAATCG+AGG 0.578452 7:-64190348 None:intergenic
GTTTCAAAAGGGTGTTGAGG+AGG 0.582089 7:+64190841 MsaT037734.1:CDS
CAAACGTGCCTCAAGGCCAT+CGG 0.583143 7:-64191419 None:intergenic
AGTAATGAAACTGACGGTGT+TGG 0.583190 7:+64190563 MsaT037734.1:CDS
CTTTGTTACTCGATTTAGGG+AGG 0.585134 7:+64192032 MsaT037734.1:CDS
TACCAGCCAAACGTGCCTCA+AGG 0.585310 7:-64191426 None:intergenic
ATGGACCCTCATTGAACTTG+CGG 0.586513 7:-64191590 None:intergenic
AGTTCATCGTTCATCACTCT+AGG 0.587295 7:-64190935 None:intergenic
CAAAGACTTTCATTACGACC+AGG 0.587494 7:+64191661 MsaT037734.1:CDS
TAGCTTGTGAAGGTTGTGAG+AGG 0.587556 7:+64192169 MsaT037734.1:CDS
AGTTATAGGCGAAAAGTACC+CGG 0.589749 7:+64190511 MsaT037734.1:CDS
AAAGCTACGACTAGTAGGAA+AGG 0.590220 7:+64191220 MsaT037734.1:CDS
TTTACCAATAATTCTTTGCG+CGG 0.594670 7:+64190647 MsaT037734.1:CDS
AAATTCGTATTCTTAGAGCC+GGG 0.595644 7:+64192223 MsaT037734.1:CDS
ATGGGACACCATCCAGCTTG+AGG 0.596627 7:+64191831 MsaT037734.1:CDS
TGATCCTTCTTATCAAACTG+AGG 0.602637 7:-64191957 None:intergenic
TAGGCCATTGGAAACCATAG+AGG 0.604324 7:-64191630 None:intergenic
AAGGTTGTGAGAGGGTAGAG+AGG 0.605831 7:+64192178 MsaT037734.1:CDS
ATCATAGTTGAACGCAACAA+TGG 0.611422 7:-64191088 None:intergenic
AAACTTGCTGGATGAATCTG+TGG 0.612156 7:+64191909 MsaT037734.1:CDS
TTGAATGTTATAGCTTGTGA+AGG 0.613935 7:+64192159 MsaT037734.1:CDS
AATCTGCCGCAAGTTCAATG+AGG 0.619310 7:+64191584 MsaT037734.1:CDS
ATCTGCCGCAAGTTCAATGA+GGG 0.620148 7:+64191585 MsaT037734.1:CDS
TAATCGACGAAGATAGCAAG+TGG 0.622111 7:+64192325 MsaT037734.1:CDS
AGTGTAAGAAGTACTGTCGA+AGG 0.624024 7:+64190749 MsaT037734.1:CDS
ACTATCGGTTAAGGAAGAGA+AGG 0.628377 7:+64190955 MsaT037734.1:CDS
TATATTTGCCGATGGCCTTG+AGG 0.628661 7:+64191411 MsaT037734.1:CDS
CCTGTGATCCGAAGCTTCGG+CGG 0.636130 7:-64191688 None:intergenic
TGCCTCGCGAGGATTGGGAA+AGG 0.638817 7:+64192100 MsaT037734.1:CDS
ACGACTAGTAGGAAAGGGCG+AGG 0.643128 7:+64191226 MsaT037734.1:CDS
GCAGTTTCAAAAGGGTGTTG+AGG 0.643820 7:+64190838 MsaT037734.1:CDS
ACATGAGGAACCTTCTCCTG+AGG 0.651054 7:+64190361 MsaT037734.1:CDS
CGTCGATTACAAAATCCTTG+TGG 0.652977 7:-64192311 None:intergenic
CAACAAATGAGATCCAGTTG+AGG 0.654653 7:+64190210 MsaT037734.1:CDS
ATCCTTTCCCAATCCTCGCG+AGG 0.655939 7:-64192102 None:intergenic
GTGTAAGAAGTACTGTCGAA+GGG 0.655972 7:+64190750 MsaT037734.1:CDS
AGTCTTAGTAATGAAACTGA+CGG 0.660322 7:+64190557 MsaT037734.1:CDS
TCTTTGTGCACAAGCTGTGG+CGG 0.664334 7:+64191300 MsaT037734.1:CDS
AACCACGGTAGAAAGAGCAG+TGG 0.669300 7:+64192269 MsaT037734.1:CDS
GGATACCAAAGTCTATAACA+TGG 0.671335 7:-64191609 None:intergenic
AAGGGAAGGAAGCATCCACA+CGG 0.680283 7:+64191007 MsaT037734.1:CDS
CATCCAGCAAGTTTCTACCA+CGG 0.681365 7:-64191900 None:intergenic
ATGTCTACTTCACCACCGTG+TGG 0.688705 7:-64191022 None:intergenic
GAAGAAGGTGTGCAATCAGG+TGG 0.695631 7:-64190317 None:intergenic
AGTAAGGTCTAGCTACCACA+AGG 0.698237 7:+64192296 MsaT037734.1:CDS
GACCTCGATTTCGACACATG+AGG 0.702383 7:+64190346 MsaT037734.1:CDS
AGACTTTCATTACGACCAGG+AGG 0.714994 7:+64191664 MsaT037734.1:CDS
GGAAGGAAGCATCCACACGG+TGG 0.756816 7:+64191010 MsaT037734.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 64190176 64192407 64190176 ID=MsaG037734
Chr7 mRNA 64190176 64192407 64190176 ID=MsaT037734.1;Parent=MsaG037734
Chr7 exon 64190176 64192407 64190176 ID=MsaT037734.1.exon1;Parent=MsaT037734.1
Chr7 CDS 64190176 64192407 64190176 ID=cds.MsaT037734.1;Parent=MsaT037734.1
Gene Sequence

>MsaT037734.1

ATGATGGATCAAAATCTTAAAGGGTATTTTGGTTCAACAAATGAGATCCAGTTGAGGAATCAATCTTTGCCTGTTCTTCAGAATCAAAGATTTGAAAATGGTTTCTTTGATCAAAGTATAGAATTTGGTTCTAATATGATACCACCTGATTGCACACCTTCTTCAACAACGACCTCGATTTCGACACATGAGGAACCTTCTCCTGAGGAGTGTGAATTTTCTGATGCTGTTTTGAGTTACATCAATAACATCCTTATGGAAGAAGATATGGAAGATAAAACATGTATGCTTCAAGATTCTTTAGATCTTCAAATTGCTGAGAAATCATTTTATGAAGTTATAGGCGAAAAGTACCCGGTTTCGCCGTTAGGAAAACCTCAAAGTCTTAGTAATGAAACTGACGGTGTTGGAGATAATTATTTTTTTGATAATTATGGTACTTGTGTTGATGATGGTGATCTTAGTAGCATTTTTACCAATAATTCTTTGCGCGGAAACTTGAGGGAAGCTCAATTTCCTCATAATGATTTTCAAGGAAATAGCATTGCACAATCATCTTATAGCTCGACAAACAGTGTAAGAAGTACTGTCGAAGGGACTCTGGATTCTCCAGACAGTGATCTACAGGTTTCTGATCAGAATAGTGAGAGTCAACCAATTTTGCAGTTTCAAAAGGGTGTTGAGGAGGCTAATAAGTTTCTCCCTAATGGAAATGGCCTCTTTCAAAATTTTGATGTTGCTAAGTATTCGATGATAGAGCCTAGAGTGATGAACGATGAACTATCGGTTAAGGAAGAGAAGGATGAGAGGGATTCTTTTCTTTTTGGGTCCAAGGGAAGGAAGCATCCACACGGTGGTGAAGTAGACATTGAAGAAAATAGAAGCAGCAAGCAAGCAGCGATTTACTCAGAACCATTGTTGCGTTCAACTATGATGGATACGTTCCTGCTTCATAGTTTAGGAGATGCTAAGACGCATTTTACGGCTCGTCGCAAGGCGTTACAAGTAAAAACAAAGATTATAACATTGCCAAGTAATACATCGAAAGCTACGACTAGTAGGAAAGGGCGAGGTAAAAAACAAAACGGGAAAAAGGAAGTGATTGATTTGAGAACACTGCTTGTTCTTTGTGCACAAGCTGTGGCGGCAGACGACCATAAAAGCGCACATGAGTTGATAAAGCAGATCAGACAGCACTCAAACCCTTTTGGAGATGGAAATCAGCGGTTGGCTCATATATTTGCCGATGGCCTTGAGGCACGTTTGGCTGGTACAGGAAGCCAAATTTATAAAGGACTAATCAGTAAAAGAACATCTGCTGCTGACTTTCTGAAAGCTTATCATCTATACCTTGCAGCTTGCCCTTTCCGGAAGATGACTAGTTTTGTCTCGAATGTCACTATATTTAAATCTGCCGCAAGTTCAATGAGGGTCCATGTTATAGACTTTGGTATCCTCTATGGTTTCCAATGGCCTACTTTCATACAAAGACTTTCATTACGACCAGGAGGACCGCCGAAGCTTCGGATCACAGGAATAGACTTTCCACAACCTGGTTTCAGGCCTGCAGAGAGAATTATAGAAACCGGTTCGCGCTTGGCAGCGTATGCTGAATCTTTTAATGTGCCATTTGAGTATAATGCCATAGCAAAAAAATGGGACACCATCCAGCTTGAGGAACTCAAGATTGAAAAAGATGAATTCCTAGTTGTTACCTGTTTTTACCGTGGTAGAAACTTGCTGGATGAATCTGTGGTAGTCGACAGTCCAAGGAATAAAATCCTCAGTTTGATAAGAAGGATCAAACCGAATATATTCATTCACGGTATTGTTAATGGAGCCTTTAATGCTCCTTTCTTTGTTACTCGATTTAGGGAGGCGTTGTTTCACTTCTCTTCACTTTTCGATATGCTTGAAAGTATCGTGCCTCGCGAGGATTGGGAAAGGATGCTAATTGAAAAAGAGATATTTGGGAAGGAAGCATTGAATGTTATAGCTTGTGAAGGTTGTGAGAGGGTAGAGAGGCCAGAGACATACAGGCAATGGCAAATTCGTATTCTTAGAGCCGGGTTTTTGCAACAGGCTTTTGCGAAAACCACGGTAGAAAGAGCAGTGGAGAAAGTAAGGTCTAGCTACCACAAGGATTTTGTAATCGACGAAGATAGCAAGTGGTTATTACAAGGTTGGAAAGGGCGAATCGTTTACGCACTTTCTTGTTGGAAACCTGCTTGA

Protein sequence

>MsaT037734.1

MMDQNLKGYFGSTNEIQLRNQSLPVLQNQRFENGFFDQSIEFGSNMIPPDCTPSSTTTSISTHEEPSPEECEFSDAVLSYINNILMEEDMEDKTCMLQDSLDLQIAEKSFYEVIGEKYPVSPLGKPQSLSNETDGVGDNYFFDNYGTCVDDGDLSSIFTNNSLRGNLREAQFPHNDFQGNSIAQSSYSSTNSVRSTVEGTLDSPDSDLQVSDQNSESQPILQFQKGVEEANKFLPNGNGLFQNFDVAKYSMIEPRVMNDELSVKEEKDERDSFLFGSKGRKHPHGGEVDIEENRSSKQAAIYSEPLLRSTMMDTFLLHSLGDAKTHFTARRKALQVKTKIITLPSNTSKATTSRKGRGKKQNGKKEVIDLRTLLVLCAQAVAADDHKSAHELIKQIRQHSNPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLISKRTSAADFLKAYHLYLAACPFRKMTSFVSNVTIFKSAASSMRVHVIDFGILYGFQWPTFIQRLSLRPGGPPKLRITGIDFPQPGFRPAERIIETGSRLAAYAESFNVPFEYNAIAKKWDTIQLEELKIEKDEFLVVTCFYRGRNLLDESVVVDSPRNKILSLIRRIKPNIFIHGIVNGAFNAPFFVTRFREALFHFSSLFDMLESIVPREDWERMLIEKEIFGKEALNVIACEGCERVERPETYRQWQIRILRAGFLQQAFAKTTVERAVEKVRSSYHKDFVIDEDSKWLLQGWKGRIVYALSCWKPA*