AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG037741

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG037741 MtrunA17_Chr7g0238921 92.784 291 21 0 1 291 6 296 0.0 565
MsaG037741 MtrunA17_Chr5g0418781 42.138 159 73 5 119 268 124 272 1.18e-26 105
MsaG037741 MtrunA17_Chr4g0051881 71.930 57 16 0 119 175 178 234 2.70e-23 97.4
MsaG037741 MtrunA17_Chr2g0294231 68.421 57 18 0 119 175 203 259 8.72e-23 96.7
MsaG037741 MtrunA17_Chr7g0270191 38.217 157 72 5 119 263 145 288 3.25e-22 94.0
MsaG037741 MtrunA17_Chr1g0194481 66.667 57 19 0 119 175 158 214 3.39e-22 94.4
MsaG037741 MtrunA17_Chr1g0150801 64.912 57 20 0 119 175 102 158 7.33e-22 89.7
MsaG037741 MtrunA17_Chr5g0443131 66.667 57 19 0 119 175 157 213 1.88e-21 92.0
MsaG037741 MtrunA17_Chr8g0383351 64.912 57 20 0 119 175 160 216 3.42e-21 89.7
MsaG037741 MtrunA17_Chr3g0129321 59.322 59 24 0 117 175 116 174 6.67e-21 88.2
MsaG037741 MtrunA17_Chr3g0106491 64.912 57 20 0 119 175 365 421 7.35e-21 92.0
MsaG037741 MtrunA17_Chr3g0106491 59.649 57 22 1 119 175 198 253 8.57e-15 74.3
MsaG037741 MtrunA17_Chr7g0224801 61.404 57 22 0 119 175 93 149 7.89e-21 87.4
MsaG037741 MtrunA17_Chr5g0445311 63.158 57 21 0 119 175 364 420 1.02e-20 92.0
MsaG037741 MtrunA17_Chr5g0445311 57.895 57 23 1 119 175 200 255 1.41e-13 70.9
MsaG037741 MtrunA17_Chr3g0129361 64.912 57 20 0 119 175 144 200 1.22e-20 88.2
MsaG037741 MtrunA17_Chr5g0418191 62.712 59 22 0 117 175 318 376 1.36e-20 90.9
MsaG037741 MtrunA17_Chr5g0418191 59.322 59 23 1 118 176 150 207 5.95e-15 74.7
MsaG037741 MtrunA17_Chr3g0101131 63.158 57 21 0 119 175 415 471 1.54e-20 91.7
MsaG037741 MtrunA17_Chr3g0101131 41.284 109 49 3 81 175 191 298 4.65e-14 72.4
MsaG037741 MtrunA17_Chr4g0068541 61.017 59 23 0 119 177 208 266 4.38e-20 89.4
MsaG037741 MtrunA17_Chr5g0432161 63.158 57 21 0 119 175 421 477 9.16e-20 89.4
MsaG037741 MtrunA17_Chr5g0432161 63.158 57 20 1 119 175 244 299 4.14e-16 78.2
MsaG037741 MtrunA17_Chr7g0218081 61.017 59 23 0 117 175 408 466 9.60e-20 89.0
MsaG037741 MtrunA17_Chr7g0218081 56.667 60 21 2 118 175 227 283 2.42e-13 70.1
MsaG037741 MtrunA17_Chr3g0079691 63.158 57 21 0 119 175 495 551 1.07e-19 89.0
MsaG037741 MtrunA17_Chr3g0079691 53.030 66 30 1 110 175 271 335 1.97e-14 73.6
MsaG037741 MtrunA17_Chr8g0383251 55.932 59 26 0 117 175 106 164 3.18e-19 83.2
MsaG037741 MtrunA17_Chr4g0042831 59.322 59 24 0 117 175 276 334 3.59e-19 86.7
MsaG037741 MtrunA17_Chr4g0042831 54.386 57 26 0 119 175 145 201 9.41e-15 73.9
MsaG037741 MtrunA17_Chr8g0335811 49.438 89 41 1 91 175 122 210 4.42e-19 84.0
MsaG037741 MtrunA17_Chr5g0447701 57.377 61 26 0 115 175 248 308 5.84e-19 85.9
MsaG037741 MtrunA17_Chr4g0074001 48.684 76 38 1 101 175 340 415 1.13e-18 85.9
MsaG037741 MtrunA17_Chr1g0188941 57.895 57 24 0 119 175 51 107 1.44e-18 79.7
MsaG037741 MtrunA17_Chr1g0147881 38.261 115 64 4 66 175 207 319 1.52e-18 84.3
MsaG037741 MtrunA17_Chr7g0263531 47.126 87 43 2 89 175 334 417 2.51e-18 84.7
MsaG037741 MtrunA17_Chr7g0263531 58.929 56 22 1 120 175 190 244 9.67e-14 70.9
MsaG037741 MtrunA17_Chr7g0243891 59.649 57 23 0 119 175 374 430 2.98e-18 84.7
MsaG037741 MtrunA17_Chr7g0243891 59.649 57 22 1 119 175 216 271 7.64e-16 77.4
MsaG037741 MtrunA17_Chr7g0248721 61.404 57 21 1 119 175 141 196 5.42e-18 80.9
MsaG037741 MtrunA17_Chr1g0184691 49.367 79 36 2 105 179 276 354 5.72e-18 82.8
MsaG037741 MtrunA17_Chr3g0136961 34.483 174 92 7 36 206 72 226 9.93e-18 81.6
MsaG037741 MtrunA17_Chr4g0004911 59.649 57 23 0 119 175 336 392 1.04e-17 82.8
MsaG037741 MtrunA17_Chr4g0004911 59.649 57 23 0 119 175 184 240 2.46e-17 82.0
MsaG037741 MtrunA17_Chr7g0249301 57.895 57 24 0 119 175 292 348 1.39e-17 82.0
MsaG037741 MtrunA17_Chr7g0249301 53.571 56 25 1 120 175 63 117 9.95e-12 64.7
MsaG037741 MtrunA17_Chr7g0270051 57.576 66 27 1 111 175 45 110 1.68e-17 80.5
MsaG037741 MtrunA17_Chr7g0249311 57.895 57 24 0 119 175 392 448 1.70e-17 82.4
MsaG037741 MtrunA17_Chr7g0249311 54.839 62 27 1 114 175 174 234 1.54e-13 70.9
MsaG037741 MtrunA17_Chr4g0071521 37.190 121 64 4 65 175 184 302 2.51e-17 80.5
MsaG037741 MtrunA17_Chr1g0150281 49.333 75 37 1 120 193 141 215 2.99e-17 80.1
MsaG037741 MtrunA17_Chr8g0386241 50.877 57 28 0 119 175 103 159 3.77e-17 77.4
MsaG037741 MtrunA17_Chr8g0379461 36.986 146 82 5 102 246 59 195 3.84e-17 79.0
MsaG037741 MtrunA17_Chr7g0228941 43.750 80 39 3 102 175 30 109 3.90e-17 75.9
MsaG037741 MtrunA17_Chr3g0139021 43.373 83 43 2 101 179 293 375 1.02e-16 79.7
MsaG037741 MtrunA17_Chr8g0348311 48.718 78 37 2 101 177 139 214 1.09e-16 79.0
MsaG037741 MtrunA17_Chr2g0293481 43.299 97 48 2 86 175 228 324 1.24e-16 79.7
MsaG037741 MtrunA17_Chr5g0401821 45.570 79 39 2 101 175 178 256 2.17e-16 77.4
MsaG037741 MtrunA17_Chr4g0053281 45.570 79 39 2 101 175 245 323 2.28e-16 78.2
MsaG037741 MtrunA17_Chr2g0333851 52.632 57 26 1 120 175 170 226 3.05e-16 77.4
MsaG037741 MtrunA17_Chr1g0202461 53.968 63 28 1 114 175 256 318 5.79e-16 77.4
MsaG037741 MtrunA17_Chr1g0189391 56.897 58 24 1 119 175 97 154 6.63e-16 76.6
MsaG037741 MtrunA17_Chr8g0387981 31.333 150 91 5 31 173 45 189 6.69e-16 77.0
MsaG037741 MtrunA17_Chr6g0485431 55.172 58 25 1 119 175 154 211 8.74e-16 76.6
MsaG037741 MtrunA17_Chr7g0248691 44.000 100 45 3 117 205 152 251 1.26e-15 75.9
MsaG037741 MtrunA17_Chr2g0322391 54.839 62 27 1 119 179 349 410 1.71e-15 76.6
MsaG037741 MtrunA17_Chr4g0060271 58.621 58 23 1 119 175 255 312 1.79e-15 76.6
MsaG037741 MtrunA17_Chr2g0284321 54.098 61 27 1 120 179 36 96 1.80e-15 73.9
MsaG037741 MtrunA17_Chr7g0216891 48.611 72 35 2 105 175 206 276 2.25e-15 76.3
MsaG037741 MtrunA17_Chr3g0099641 54.098 61 27 1 120 179 252 312 2.63e-15 75.9
MsaG037741 MtrunA17_Chr8g0387501 53.226 62 28 1 115 175 125 186 4.17e-15 73.9
MsaG037741 MtrunA17_Chr4g0051181 47.222 72 36 2 105 175 230 300 4.30e-15 75.1
MsaG037741 MtrunA17_Chr2g0288871 38.938 113 52 3 65 175 265 362 5.73e-15 75.1
MsaG037741 MtrunA17_Chr4g0075201 40.000 100 44 2 77 175 240 324 5.77e-15 74.7
MsaG037741 MtrunA17_Chr2g0319961 57.895 57 23 1 120 175 81 137 7.00e-15 72.8
MsaG037741 MtrunA17_Chr3g0126391 57.377 61 23 1 116 173 130 190 9.32e-15 73.6
MsaG037741 MtrunA17_Chr7g0270831 56.667 60 25 1 117 175 214 273 1.43e-14 73.6
MsaG037741 MtrunA17_Chr4g0001361 52.632 57 26 1 120 175 163 219 1.83e-14 72.4
MsaG037741 MtrunA17_Chr1g0150271 50.877 57 27 1 120 175 102 158 4.04e-14 70.9
MsaG037741 MtrunA17_Chr2g0289181 53.333 60 27 1 117 175 12 71 6.67e-14 69.7
MsaG037741 MtrunA17_Chr7g0275531 32.278 158 79 7 23 173 39 175 1.25e-13 70.1
MsaG037741 MtrunA17_Chr2g0302391 52.632 57 26 1 120 175 212 268 3.11e-13 69.3
MsaG037741 MtrunA17_Chr8g0347251 44.737 76 35 2 105 173 118 193 1.99e-12 66.6
MsaG037741 MtrunA17_Chr5g0432071 50.000 58 28 1 119 176 104 160 2.78e-12 64.7
MsaG037741 MtrunA17_Chr4g0025051 50.877 57 27 1 120 175 336 392 1.07e-11 65.1
MsaG037741 MtrunA17_Chr8g0334541 53.448 58 24 1 119 173 103 160 1.59e-11 63.5
MsaG037741 MtrunA17_Chr8g0350621 51.724 58 25 1 119 173 111 168 1.77e-11 63.2
MsaG037741 MtrunA17_Chr2g0315381 49.231 65 30 1 117 178 142 206 3.39e-11 62.8
MsaG037741 MtrunA17_Chr3g0128671 52.632 57 24 1 120 173 128 184 6.06e-11 62.0
MsaG037741 MtrunA17_Chr7g0244981 51.724 58 25 1 119 173 122 179 6.24e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG037741 AT5G43290.1 42.857 259 122 10 25 270 21 266 5.68e-51 169
MsaG037741 AT1G69310.4 42.208 154 73 4 119 269 147 287 1.04e-28 111
MsaG037741 AT1G69310.2 42.208 154 73 4 119 269 147 287 1.04e-28 111
MsaG037741 AT1G69310.1 42.208 154 73 4 119 269 147 287 1.04e-28 111
MsaG037741 AT5G49520.1 32.597 181 100 3 119 280 221 398 1.98e-23 99.4
MsaG037741 AT1G69310.3 39.610 154 73 5 119 269 147 283 3.35e-23 96.7
MsaG037741 AT2G47260.1 66.102 59 20 0 119 177 174 232 1.01e-22 96.3
MsaG037741 AT1G29860.1 68.421 57 18 0 119 175 136 192 2.28e-22 94.4
MsaG037741 AT4G18170.1 68.421 57 18 0 119 175 172 228 4.61e-22 94.4
MsaG037741 AT1G64000.1 64.912 57 20 0 119 175 114 170 7.88e-22 90.9
MsaG037741 AT4G39410.1 54.545 77 35 0 119 195 223 299 1.30e-21 92.8
MsaG037741 AT5G46350.1 66.667 57 19 0 119 175 183 239 2.91e-21 92.0
MsaG037741 AT1G13960.2 62.712 59 22 0 117 175 254 312 3.57e-21 92.4
MsaG037741 AT1G13960.2 62.069 58 21 1 118 175 75 131 2.40e-15 75.9
MsaG037741 AT2G03340.1 62.712 59 22 0 117 175 413 471 3.65e-21 93.6
MsaG037741 AT2G03340.1 45.833 96 40 3 88 175 214 305 5.36e-15 75.5
MsaG037741 AT2G04880.2 63.077 65 24 0 119 183 283 347 4.13e-21 93.2
MsaG037741 AT2G04880.2 67.500 40 13 0 119 158 111 150 1.17e-11 65.1
MsaG037741 AT1G13960.1 62.712 59 22 0 117 175 407 465 5.10e-21 93.2
MsaG037741 AT1G13960.1 62.069 58 21 1 118 175 228 284 2.20e-15 76.6
MsaG037741 AT2G04880.1 63.077 65 24 0 119 183 307 371 5.46e-21 92.8
MsaG037741 AT2G04880.1 67.500 40 13 0 119 158 111 150 1.09e-11 65.5
MsaG037741 AT5G41570.1 63.158 57 21 0 119 175 98 154 6.86e-21 88.2
MsaG037741 AT5G13080.1 61.404 57 22 0 119 175 67 123 2.11e-20 85.9
MsaG037741 AT5G07100.2 63.158 57 21 0 119 175 141 197 2.53e-20 87.4
MsaG037741 AT5G07100.2 54.098 61 28 0 115 175 20 80 1.06e-14 72.0
MsaG037741 AT5G07100.4 63.158 57 21 0 119 175 141 197 2.53e-20 87.4
MsaG037741 AT5G07100.4 54.098 61 28 0 115 175 20 80 1.06e-14 72.0
MsaG037741 AT5G07100.5 63.158 57 21 0 119 175 141 197 2.53e-20 87.4
MsaG037741 AT5G07100.5 54.098 61 28 0 115 175 20 80 1.06e-14 72.0
MsaG037741 AT5G07100.3 63.158 57 21 0 119 175 141 197 2.53e-20 87.4
MsaG037741 AT5G07100.3 54.098 61 28 0 115 175 20 80 1.06e-14 72.0
MsaG037741 AT3G62340.1 64.912 57 20 0 119 175 118 174 3.01e-20 88.6
MsaG037741 AT2G25000.1 32.597 181 103 7 8 175 29 203 3.78e-20 88.2
MsaG037741 AT2G46130.1 63.158 57 21 0 119 175 30 86 5.22e-20 83.6
MsaG037741 AT3G01970.1 59.649 57 23 0 119 175 65 121 6.53e-20 84.3
MsaG037741 AT5G07100.1 63.158 57 21 0 119 175 234 290 8.01e-20 87.8
MsaG037741 AT5G07100.1 54.098 61 28 0 115 175 113 173 2.29e-14 72.4
MsaG037741 AT5G56270.1 63.158 57 21 0 119 175 487 543 1.11e-19 89.4
MsaG037741 AT5G56270.1 57.576 66 27 1 114 179 268 332 1.96e-16 79.7
MsaG037741 AT3G01080.1 61.017 59 23 0 117 175 304 362 2.39e-19 87.8
MsaG037741 AT3G01080.1 58.621 58 23 1 118 175 166 222 1.58e-13 70.9
MsaG037741 AT3G01080.2 61.017 59 23 0 117 175 342 400 2.73e-19 87.8
MsaG037741 AT3G01080.2 59.649 57 22 1 119 175 205 260 1.50e-13 70.9
MsaG037741 AT5G26170.1 57.895 57 24 0 119 175 113 169 3.96e-19 83.2
MsaG037741 AT2G44745.1 63.793 58 21 0 119 176 145 202 4.36e-19 84.0
MsaG037741 AT4G26640.5 61.404 57 22 0 119 175 205 261 4.95e-19 86.7
MsaG037741 AT4G26640.5 59.322 59 23 1 117 175 33 90 3.48e-14 72.4
MsaG037741 AT4G26640.6 61.404 57 22 0 119 175 205 261 4.95e-19 86.7
MsaG037741 AT4G26640.6 59.322 59 23 1 117 175 33 90 3.48e-14 72.4
MsaG037741 AT4G26640.4 61.404 57 22 0 119 175 205 261 4.95e-19 86.7
MsaG037741 AT4G26640.4 59.322 59 23 1 117 175 33 90 3.48e-14 72.4
MsaG037741 AT4G26640.3 61.404 57 22 0 119 175 205 261 4.95e-19 86.7
MsaG037741 AT4G26640.3 59.322 59 23 1 117 175 33 90 3.48e-14 72.4
MsaG037741 AT4G26640.7 61.404 57 22 0 119 175 341 397 5.26e-19 87.4
MsaG037741 AT4G26640.7 59.322 59 23 1 117 175 169 226 3.11e-14 73.2
MsaG037741 AT4G26640.1 61.404 57 22 0 119 175 309 365 5.62e-19 87.0
MsaG037741 AT4G26640.1 59.322 59 23 1 117 175 137 194 3.36e-14 72.8
MsaG037741 AT4G26640.2 61.404 57 22 0 119 175 381 437 5.83e-19 87.0
MsaG037741 AT4G26640.2 59.322 59 23 1 117 175 209 266 3.22e-14 73.2
MsaG037741 AT2G25000.3 32.934 167 94 6 22 175 21 182 1.13e-18 83.6
MsaG037741 AT2G25000.2 38.017 121 61 4 66 175 43 160 1.71e-18 82.8
MsaG037741 AT2G25000.4 38.017 121 61 4 66 175 43 160 1.71e-18 82.8
MsaG037741 AT2G38470.1 61.404 57 22 0 119 175 362 418 3.40e-18 84.7
MsaG037741 AT2G38470.1 62.069 58 21 1 118 175 183 239 6.60e-16 78.2
MsaG037741 AT5G64810.1 54.386 57 26 0 119 175 110 166 4.95e-18 80.9
MsaG037741 AT4G30935.1 46.835 79 41 1 98 175 309 387 5.31e-18 84.0
MsaG037741 AT4G30935.1 53.571 56 25 1 120 175 169 223 1.25e-11 65.1
MsaG037741 AT4G31800.2 54.237 59 26 1 120 177 112 170 7.49e-18 81.3
MsaG037741 AT4G31550.1 50.667 75 33 2 105 175 229 303 8.09e-18 82.4
MsaG037741 AT4G31550.2 50.667 75 33 2 105 175 228 302 8.50e-18 82.4
MsaG037741 AT2G30250.1 62.500 56 21 0 120 175 329 384 9.24e-18 83.2
MsaG037741 AT2G30250.1 56.140 57 24 1 119 175 166 221 9.97e-13 68.2
MsaG037741 AT2G21900.1 54.386 57 26 0 119 175 109 165 9.59e-18 80.1
MsaG037741 AT1G55600.1 54.098 61 28 0 119 179 307 367 9.82e-18 83.6
MsaG037741 AT4G31800.1 54.237 59 26 1 120 177 177 235 1.33e-17 81.6
MsaG037741 AT2G23320.1 46.835 79 38 2 101 175 219 297 1.65e-17 81.6
MsaG037741 AT2G37260.3 57.895 57 24 0 119 175 269 325 2.78e-17 81.3
MsaG037741 AT2G37260.3 58.929 56 22 1 120 175 86 140 2.78e-14 72.8
MsaG037741 AT2G37260.2 57.895 57 24 0 119 175 267 323 2.79e-17 81.3
MsaG037741 AT2G37260.2 58.929 56 22 1 120 175 84 138 2.77e-14 72.8
MsaG037741 AT2G37260.1 57.895 57 24 0 119 175 349 405 3.14e-17 81.6
MsaG037741 AT2G37260.1 58.929 56 22 1 120 175 166 220 2.68e-14 73.2
MsaG037741 AT2G34830.1 41.322 121 59 3 67 175 152 272 3.20e-17 81.6
MsaG037741 AT4G26440.1 56.897 58 25 0 119 176 372 429 3.54e-17 82.0
MsaG037741 AT4G26440.1 42.017 119 51 3 119 235 178 280 2.16e-16 79.7
MsaG037741 AT2G34830.2 41.322 121 59 3 67 175 161 281 3.75e-17 81.6
MsaG037741 AT5G28650.1 49.367 79 36 2 101 175 241 319 4.26e-17 80.5
MsaG037741 AT5G52830.1 37.500 144 67 4 117 258 163 285 5.38e-17 80.5
MsaG037741 AT1G30650.1 45.536 112 51 4 73 175 164 274 6.47e-17 80.9
MsaG037741 AT2G30590.1 42.708 96 49 3 88 179 281 374 7.12e-17 80.5
MsaG037741 AT3G04670.1 48.101 79 37 2 101 175 241 319 1.33e-16 79.0
MsaG037741 AT2G24570.1 49.333 75 34 2 105 175 226 300 3.02e-16 78.2
MsaG037741 AT1G62300.1 40.206 97 56 2 81 175 273 369 4.32e-16 78.6
MsaG037741 AT1G80840.1 54.386 57 25 1 120 175 147 203 4.86e-16 77.0
MsaG037741 AT1G68150.1 44.578 83 44 2 94 175 211 292 6.19e-16 77.8
MsaG037741 AT4G01250.1 48.718 78 37 2 101 177 112 187 9.41e-16 76.3
MsaG037741 AT1G29280.1 57.895 57 23 1 120 175 75 131 1.06e-15 75.5
MsaG037741 AT4G24240.1 41.758 91 47 3 89 175 250 338 1.83e-15 76.3
MsaG037741 AT2G46400.1 48.148 81 34 2 101 173 81 161 3.49e-15 74.7
MsaG037741 AT5G15130.1 56.897 58 24 1 119 175 227 284 3.71e-15 75.9
MsaG037741 AT5G15130.2 56.897 58 24 1 119 175 185 242 3.73e-15 75.9
MsaG037741 AT3G58710.2 51.351 74 32 2 120 192 71 141 4.85e-15 73.9
MsaG037741 AT3G58710.1 51.351 74 32 2 120 192 72 142 5.00e-15 73.9
MsaG037741 AT2G46130.2 56.140 57 21 1 119 175 30 82 1.06e-14 69.3
MsaG037741 AT5G45050.2 43.750 96 50 3 83 175 1115 1209 1.26e-14 74.7
MsaG037741 AT5G45050.1 43.750 96 50 3 83 175 1143 1237 1.33e-14 74.7
MsaG037741 AT5G45050.4 43.750 96 50 3 83 175 1004 1098 1.43e-14 74.3
MsaG037741 AT4G23550.1 56.140 57 24 1 120 175 141 197 2.00e-14 72.8
MsaG037741 AT4G04450.2 53.125 64 29 1 120 182 199 262 2.34e-14 73.2
MsaG037741 AT1G18860.1 45.783 83 42 3 94 175 216 296 2.62e-14 73.2
MsaG037741 AT2G40740.1 54.098 61 25 1 119 176 173 233 3.00e-14 72.0
MsaG037741 AT2G40740.3 54.098 61 25 1 119 176 182 242 3.39e-14 72.0
MsaG037741 AT4G04450.1 57.895 57 23 1 120 175 293 349 3.83e-14 72.8
MsaG037741 AT4G22070.4 57.895 57 23 1 120 175 298 354 4.57e-14 72.8
MsaG037741 AT4G22070.3 57.895 57 23 1 120 175 298 354 4.57e-14 72.8
MsaG037741 AT4G22070.2 57.895 57 23 1 120 175 298 354 4.57e-14 72.8
MsaG037741 AT4G22070.1 57.895 57 23 1 120 175 298 354 4.57e-14 72.8
MsaG037741 AT3G01080.3 59.649 57 22 1 119 175 205 260 7.96e-14 71.2
MsaG037741 AT5G24110.1 35.897 117 58 4 74 173 54 170 3.38e-13 68.9
MsaG037741 AT4G01720.1 55.172 58 25 1 119 175 239 296 3.45e-13 70.1
MsaG037741 AT4G11070.2 52.459 61 26 1 116 173 106 166 1.92e-12 66.6
MsaG037741 AT4G11070.1 52.459 61 26 1 116 173 138 198 2.00e-12 67.0
MsaG037741 AT1G66560.1 49.153 59 27 1 119 174 103 161 3.32e-12 65.5
MsaG037741 AT2G40750.1 36.036 111 54 3 119 220 152 254 3.96e-12 66.2
MsaG037741 AT4G23810.1 50.820 61 27 1 116 173 155 215 1.07e-11 64.7
MsaG037741 AT1G69810.1 49.153 59 28 2 119 175 203 261 1.52e-11 64.7
MsaG037741 AT1G69810.2 49.153 59 28 2 119 175 145 203 1.87e-11 64.3
MsaG037741 AT5G01900.1 46.575 73 33 2 120 186 111 183 1.91e-11 63.5
MsaG037741 AT1G66550.2 44.444 63 32 1 119 178 103 165 4.24e-11 62.4
MsaG037741 AT1G66550.1 44.444 63 32 1 119 178 108 170 4.63e-11 62.4

Find 77 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAACTTCACTTGCTTTA+TGG 0.118410 7:+64322392 None:intergenic
TGAAGATATGGTCCCGTTTA+TGG 0.176330 7:-64322245 MsaT037741.1:CDS
TTGTGTACGGTCCAATAAAA+TGG 0.226460 7:+64322306 None:intergenic
TTGATGAAATTTGTTGAAAT+TGG 0.235547 7:+64324817 None:intergenic
CTTCACTTGCTTTATGGTCT+TGG 0.238976 7:+64322398 None:intergenic
TTCCTTTCAAATATTTATTC+AGG 0.250036 7:-64324891 MsaT037741.1:CDS
TCAAGAGTTTACCTAGGATT+TGG 0.255247 7:+64324491 None:intergenic
AGCCCAATCTAGTACTTCTT+TGG 0.299775 7:-64322341 MsaT037741.1:CDS
AGAAAATAATGTCTTCTAAT+TGG 0.303170 7:-64325043 MsaT037741.1:CDS
TTTGTTGAAATTGGTTACTA+TGG 0.312426 7:+64324826 None:intergenic
GATTGTCCCACTATGAAATA+AGG 0.327297 7:+64322484 None:intergenic
TTCACTTGCTTTATGGTCTT+GGG 0.328292 7:+64322399 None:intergenic
CAAGAGTTTACCTAGGATTT+GGG 0.328816 7:+64324492 None:intergenic
CATGGAGTTCTCGTATATTC+TGG 0.334697 7:+64322365 None:intergenic
GGATATAGGTGGAGGAAGTA+TGG 0.340368 7:-64324536 MsaT037741.1:CDS
AAGTACTAGATTGGGCTTCA+TGG 0.362310 7:+64322347 None:intergenic
AGGATTTGGGCTATTCTTGA+TGG 0.375798 7:+64324505 None:intergenic
CACTATCATCATTGTTTGTA+GGG 0.379116 7:+64322215 None:intergenic
TCACTATCATCATTGTTTGT+AGG 0.380021 7:+64322214 None:intergenic
ACCTTTCTCCTCCAGCATAA+TGG 0.382455 7:-64322162 None:intergenic
TGCTTATCCTTATTTCATAG+TGG 0.391267 7:-64322491 MsaT037741.1:CDS
GTAGGCTTGGACTTCTTGAT+TGG 0.405913 7:+64322439 None:intergenic
CTCCATCATTGTCTTTGACA+TGG 0.406707 7:+64325064 None:intergenic
TAAGTGATTATGAGAGTGTC+AGG 0.409746 7:+64322535 None:intergenic
GCTTCTTAGCTCCACACCTT+GGG 0.410981 7:+64322581 None:intergenic
ACTTTGAAAATCAAATGCTT+TGG 0.412320 7:-64324578 MsaT037741.1:CDS
GATACGGTCCAAGAAAATTT+CGG 0.416624 7:-64322283 MsaT037741.1:CDS
AGAAGGGTTGCTTGAAGATA+TGG 0.422809 7:-64322257 MsaT037741.1:CDS
AGGAGAAAGGTGTGAGGAGA+AGG 0.422919 7:+64322174 None:intergenic
GTAGGGTTCCTAACCATAAA+CGG 0.425062 7:+64322232 None:intergenic
GTTCCAAAGAAGTACTAGAT+TGG 0.431307 7:+64322338 None:intergenic
ATATGGTCCCGTTTATGGTT+AGG 0.432058 7:-64322240 MsaT037741.1:CDS
GGCAATGGGTTGGGTGATGA+TGG 0.433026 7:-64324557 MsaT037741.1:CDS
GGCTTGGACTTCTTGATTGG+TGG 0.433333 7:+64322442 None:intergenic
TTCCAAAGAAGTACTAGATT+GGG 0.440833 7:+64322339 None:intergenic
AAATCAAATGCTTTGGCAAT+GGG 0.442693 7:-64324571 MsaT037741.1:CDS
TCCTTGTGAAGAGGTAGGCT+TGG 0.442743 7:+64322426 None:intergenic
AAAGGAACCTATTAAAATGT+TGG 0.448616 7:+64324907 None:intergenic
GGTTGGGTGATGATGGATAT+AGG 0.450448 7:-64324550 MsaT037741.1:CDS
CAAGAAAATTTCGGCTCAGA+AGG 0.452520 7:-64322274 MsaT037741.1:CDS
AAAATCAAATGCTTTGGCAA+TGG 0.453326 7:-64324572 MsaT037741.1:CDS
TGAAGAATTATCACTTATGT+TGG 0.454606 7:+64324935 None:intergenic
TGCTTCTTAGCTCCACACCT+TGG 0.455894 7:+64322580 None:intergenic
AAATGCTTTGGCAATGGGTT+GGG 0.461090 7:-64324566 MsaT037741.1:CDS
CTTAGCTCCACACCTTGGGT+TGG 0.467655 7:+64322585 None:intergenic
TGTGTACGGTCCAATAAAAT+GGG 0.485883 7:+64322307 None:intergenic
TAGGGTTCCTAACCATAAAC+GGG 0.487020 7:+64322233 None:intergenic
CTTGCTTTATGGTCTTGGGT+TGG 0.490234 7:+64322403 None:intergenic
GCTTATCCTTATTTCATAGT+GGG 0.490566 7:-64322490 MsaT037741.1:CDS
CTTGGACCGTATCTTGTGTA+CGG 0.501432 7:+64322293 None:intergenic
TCAAGAATAGCCCAAATCCT+AGG 0.505398 7:-64324502 MsaT037741.1:intron
TCCATTATGCTGGAGGAGAA+AGG 0.508409 7:+64322161 None:intergenic
GAACAAACAGGAGTTACTAT+AGG 0.514245 7:-64322612 MsaT037741.1:intron
AAACCAGAAGTCCATTATGC+TGG 0.521824 7:+64322151 None:intergenic
ACTCTCATAATCACTTATGA+AGG 0.527480 7:-64322529 MsaT037741.1:CDS
GTTGGTCCTTGTGAAGAGGT+AGG 0.529031 7:+64322421 None:intergenic
CAAATGCTTTGGCAATGGGT+TGG 0.534026 7:-64324567 MsaT037741.1:CDS
ATTGGACCGTACACAAGATA+CGG 0.536511 7:-64322299 MsaT037741.1:CDS
ATCCATGTCAAAGACAATGA+TGG 0.541467 7:-64325066 None:intergenic
TTGGGTTGGTCCTTGTGAAG+AGG 0.546121 7:+64322417 None:intergenic
AAGGATAAGCAAAGTGCAAG+TGG 0.571322 7:+64322503 None:intergenic
GACCTGAATAAATATTTGAA+AGG 0.576414 7:+64324889 None:intergenic
GCAGGTTGAGAGATCTAATG+AGG 0.579944 7:-64322560 MsaT037741.1:CDS
AAGAAAATTTCGGCTCAGAA+GGG 0.589966 7:-64322273 MsaT037741.1:CDS
TTCAACAAATTTCATCAACA+AGG 0.600579 7:-64324812 MsaT037741.1:intron
TGCTGGAGGAGAAAGGTGTG+AGG 0.602724 7:+64322168 None:intergenic
AAGGTGTGGAGCTAAGAAGC+AGG 0.603446 7:-64322578 MsaT037741.1:CDS
AGGTGCACCAACCCAAGGTG+TGG 0.606638 7:-64322592 MsaT037741.1:CDS
TCATGTGGCAACATAAGAAG+AGG 0.619719 7:+64324975 None:intergenic
AAAGCAAGTGAAGTTCATGA+AGG 0.625415 7:-64322388 MsaT037741.1:CDS
TCCAAGCCTACCTCTTCACA+AGG 0.631287 7:-64322427 MsaT037741.1:CDS
ACTTCAGTTACTCTCTCATG+TGG 0.640110 7:+64324960 None:intergenic
ACTATAGGTGCACCAACCCA+AGG 0.643448 7:-64322597 MsaT037741.1:CDS
CCAGAAGTCCATTATGCTGG+AGG 0.643601 7:+64322154 None:intergenic
GTGATGATGGATATAGGTGG+AGG 0.658043 7:-64324544 MsaT037741.1:CDS
TGGGTGATGATGGATATAGG+TGG 0.667370 7:-64324547 MsaT037741.1:CDS
AAGTGATTATGAGAGTGTCA+GGG 0.690845 7:+64322536 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 64322165 64325084 64322165 ID=MsaG037741
Chr7 mRNA 64322165 64325084 64322165 ID=MsaT037741.1;Parent=MsaG037741
Chr7 exon 64322165 64322624 64322165 ID=MsaT037741.1.exon3;Parent=MsaT037741.1
Chr7 CDS 64322165 64322624 64322165 ID=cds.MsaT037741.1;Parent=MsaT037741.1
Chr7 exon 64324503 64324646 64324503 ID=MsaT037741.1.exon2;Parent=MsaT037741.1
Chr7 CDS 64324503 64324646 64324503 ID=cds.MsaT037741.1;Parent=MsaT037741.1
Chr7 exon 64324813 64325084 64324813 ID=MsaT037741.1.exon1;Parent=MsaT037741.1
Chr7 CDS 64324813 64325084 64324813 ID=cds.MsaT037741.1;Parent=MsaT037741.1
Gene Sequence

>MsaT037741.1

ATGTCAAAGACAATGATGGAGAAAATAATGTCTTCTAATTGGTCAGAGAATGATGAACTTTTAAGAGAGCTTTTAGTTGATGAGTCTCCTCTTCTTATGTTGCCACATGAGAGAGTAACTGAAGTAACCAACATAAGTGATAATTCTTCAAAAGACCAACATTTTAATAGGTTCCTTTCAAATATTTATTCAGGTCCTACCATCTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGTAACCAATTTCAACAAATTTCATCAACAAGAGTTTCTATTTTAGAAAGGAGTTTGAGTAAGATTGAGAATAAGTATACTTTGAAAATCAAATGCTTTGGCAATGGGTTGGGTGATGATGGATATAGGTGGAGGAAGTATGGTCAAAAATCCATCAAGAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACCAACCCAAGGTGTGGAGCTAAGAAGCAGGTTGAGAGATCTAATGAGGACCCTGACACTCTCATAATCACTTATGAAGGACTCCACTTGCACTTTGCTTATCCTTATTTCATAGTGGGACAATCACATCAATCTCATTCTCGTCCACCAATCAAGAAGTCCAAGCCTACCTCTTCACAAGGACCAACCCAAGACCATAAAGCAAGTGAAGTTCATGAAGGCCAGAATATACGAGAACTCCATGAAGCCCAATCTAGTACTTCTTTGGAACTCATTTCACCCATTTTATTGGACCGTACACAAGATACGGTCCAAGAAAATTTCGGCTCAGAAGGGTTGCTTGAAGATATGGTCCCGTTTATGGTTAGGAACCCTACAAACAATGATGATAGTGATGATTACTCAAAATTTTCCTTCTCCTCACACCTTTCTCCTCCAGCATAA
Protein sequence

>MsaT037741.1

MSKTMMEKIMSSNWSENDELLRELLVDESPLLMLPHERVTEVTNISDNSSKDQHFNRFLSNIYSGPTISDIENALLVTNHSNQFQQISSTRVSILERSLSKIENKYTLKIKCFGNGLGDDGYRWRKYGQKSIKNSPNPRSYYRCTNPRCGAKKQVERSNEDPDTLIITYEGLHLHFAYPYFIVGQSHQSHSRPPIKKSKPTSSQGPTQDHKASEVHEGQNIRELHEAQSSTSLELISPILLDRTQDTVQENFGSEGLLEDMVPFMVRNPTNNDDSDDYSKFSFSSHLSPPA*