AlfalfaGEDB | MsaG037757

M. sativa ssp. caerulea / MsaG037757

KEGG: K14486
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037757	XP_013448901.1	95.147	680	33	0	1	680	1	680	0.0	1338

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037757	sp\|Q9XED8\|ARFI_ARATH	56.567	670	229	16	2	663	1	616	0.0	681

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037757	tr\|A0A072U1C1\|A0A072U1C1_MEDTR	95.147	680	33	0	1	680	1	680	0.0	1338

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TFs/TRs:

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Gene ID	Type	Classification
MsaG037757	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG037757	MtrunA17_Chr7g0239061	95.147	680	33	0	1	680	1	680	0.0	1338
MsaG037757	MtrunA17_Chr4g0009751	70.111	629	160	8	13	637	18	622	0.0	837
MsaG037757	MtrunA17_Chr8g0346711	55.248	686	246	14	9	677	24	665	0.0	708
MsaG037757	MtrunA17_Chr2g0276781	67.956	362	110	4	9	367	18	376	1.06e-171	506
MsaG037757	MtrunA17_Chr2g0276781	42.021	188	95	6	485	664	461	642	1.58e-33	137
MsaG037757	MtrunA17_Chr8g0385791	61.702	376	134	7	8	378	53	423	3.72e-151	459
MsaG037757	MtrunA17_Chr8g0385791	38.725	204	104	6	477	661	601	802	5.46e-32	132
MsaG037757	MtrunA17_Chr2g0285461	49.733	374	178	8	6	373	15	384	7.12e-108	347
MsaG037757	MtrunA17_Chr2g0285461	35.000	120	70	4	560	672	765	883	1.36e-14	77.8
MsaG037757	MtrunA17_Chr8g0376771	49.072	377	175	8	6	373	15	383	5.76e-106	343

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG037757	AT4G23980.2	56.716	670	226	16	2	663	1	614	681
MsaG037757	AT4G23980.1	56.567	670	229	16	2	663	1	616	681
MsaG037757	AT1G59750.2	48.974	682	260	17	11	667	19	637	597
MsaG037757	AT1G59750.1	48.986	690	251	18	11	667	19	640	596
MsaG037757	AT1G59750.3	48.986	690	251	18	11	667	19	640	596
MsaG037757	AT1G35540.1	44.544	669	278	15	5	663	18	603	546
MsaG037757	AT1G34410.1	44.765	659	274	12	5	654	18	595	545
MsaG037757	AT1G34310.1	45.008	651	272	13	5	648	18	589	534
MsaG037757	AT1G35520.1	44.977	647	266	12	11	648	24	589	533
MsaG037757	AT3G61830.1	70.083	361	103	3	8	365	19	377	530

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Find 150 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTTTGTCCAGCACG+AGG	0.695811	7:-64848054	None:intergenic
AAATAAGTTTGATATCTCAA+AGG	0.603379	7:+64851588	MsaT037757.1:CDS
AACACGACAAAGGATCTTGT+TGG	0.481262	7:-64848333	None:intergenic
AACTCAGGAATTGGTTGCTA+AGG	0.479871	7:+64849271	MsaT037757.1:CDS
AACTCTGATACAAGTACTCA+TGG	0.524293	7:+64849080	MsaT037757.1:CDS
AAGAACTCACTCCTTCAGCA+AGG	0.678844	7:+64849049	MsaT037757.1:CDS
AAGAGGATATTTCTTCACAC+TGG	0.605848	7:+64850585	MsaT037757.1:CDS
AAGGAGTGAGTTCTTGGTCT+TGG	0.354402	7:-64849041	None:intergenic
ACAATTTCCCATTTATTCCT+AGG	0.375607	7:-64851990	None:intergenic
ACACGACAAAGGATCTTGTT+GGG	0.504393	7:-64848332	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	64847976	64852410	64847976	ID=MsaG037757
Chr7	mRNA	64847976	64852410	64847976	ID=MsaT037757.1;Parent=MsaG037757
Chr7	exon	64847976	64848104	64847976	ID=MsaT037757.1.exon1;Parent=MsaT037757.1
Chr7	CDS	64847976	64848104	64847976	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64848278	64848373	64848278	ID=MsaT037757.1.exon2;Parent=MsaT037757.1
Chr7	CDS	64848278	64848373	64848278	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64848838	64848894	64848838	ID=MsaT037757.1.exon3;Parent=MsaT037757.1
Chr7	CDS	64848838	64848894	64848838	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64848999	64849151	64848999	ID=MsaT037757.1.exon4;Parent=MsaT037757.1
Chr7	CDS	64848999	64849151	64848999	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64849251	64849335	64849251	ID=MsaT037757.1.exon5;Parent=MsaT037757.1
Chr7	CDS	64849251	64849335	64849251	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64849672	64849762	64849672	ID=MsaT037757.1.exon6;Parent=MsaT037757.1
Chr7	CDS	64849672	64849762	64849672	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64849895	64850059	64849895	ID=MsaT037757.1.exon7;Parent=MsaT037757.1
Chr7	CDS	64849895	64850059	64849895	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64850152	64850271	64850152	ID=MsaT037757.1.exon8;Parent=MsaT037757.1
Chr7	CDS	64850152	64850271	64850152	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64850562	64850634	64850562	ID=MsaT037757.1.exon9;Parent=MsaT037757.1
Chr7	CDS	64850562	64850634	64850562	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64850736	64850886	64850736	ID=MsaT037757.1.exon10;Parent=MsaT037757.1
Chr7	CDS	64850736	64850886	64850736	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64851095	64851696	64851095	ID=MsaT037757.1.exon11;Parent=MsaT037757.1
Chr7	CDS	64851095	64851696	64851095	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64851876	64852063	64851876	ID=MsaT037757.1.exon12;Parent=MsaT037757.1
Chr7	CDS	64851876	64852063	64851876	ID=cds.MsaT037757.1;Parent=MsaT037757.1
Chr7	exon	64852278	64852410	64852278	ID=MsaT037757.1.exon13;Parent=MsaT037757.1
Chr7	CDS	64852278	64852410	64852278	ID=cds.MsaT037757.1;Parent=MsaT037757.1

Gene Sequence

>MsaT037757.1

ATGATGATGAATAATGGTGAAGAAAATGAACTCTATGAACAGTTATGGAAAGCTTGTGCTGGTCCTCATGTTGAAGTTCCTCGTGCTGGACAAAGAGTTTTCTATTTTCCTCAAGGACATATGGAACAATTAGAAGTATCAACAAATCAGGAACTAAATCAGAGGATTCCATTGTTCAAACTTCCCAACAAGATCCTTTGTCGTGTTGTCAATGTTCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATAACTCTGGTACCAGAATCTAATCAAACTGAGCCTACAAGCCTTGATCCTTGTCCTGCCGAACCTCCAAGACCAAGAACTCACTCCTTCAGCAAGGTCTTAACTAACTCTGATACAAGTACTCATGGTGGCTTTTCTGTTCTTCGGAAACATGCCACAGAATGCCTTCCATCACTGGATATGTCCCAATCTACTCCAACTCAGGAATTGGTTGCTAAGGATCTTCACAATTATGAATGGCACTTTAAGCATATATTTAGAGGTCAACCACGTCGACACTTGCTCACAACTGGATGGAGTACGTTCGTGACTTCAAAAAGATTAGTTGCTGGAGATACGTTTGTGTTTCTGAGAGGGCACAATGGAGAATTACGCGTTGGCGTGAGGCATCTTGCTTCTCCACAAAGCTGCATGCCTTCATCTGTGATTTCCGGTCAGAGCATGCACCTTGGAGTCCTTGCAACCGCGTCTCATGCTGTTGCAACTCAAACTCTTTTTGTAGTATACTACAAGCCCAGGATGAGCCAGTTCATTATAAGTGTGAATAAGTATATGGAAGCTATCAACCAAAAATTTAGTGTTGGCATGAGGTTTAAGATGAGTTTTGATGGGGATGATTCTTCTGAGACTGACAAAAGATTTTCTGGCACAATAATTGGACAAGAGGATATTTCTTCACACTGGTTAAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGACGCTGCATCGATTCCAAGACCTGATAGAATTTCACCATGGGAGATAGAACCCCTTCTGGCTTCTGCTCCTACGACTATTCAACCTCCTGCTGCAAAATATAAAAGGCCTAGGCTACCTAGTGACGTTCCAGATTTTGGAGACACAACAGTAGGTGACTCTACTTACTGGGAAAATGGGCTGACACAATCCGATGTAACACAAGTTAATAATATTATGTCTGAAAACATAAGGAATGACGGTATGCATTTGTGGCATCATAAGCAAACTGATAATAGCAGCAGCAATGGTTTATCGAGGAATCTGACTGACGGAAGTTGGCTATCTTCTCCTCATTCAAGTGGTCCTTCTCATTTGTGTCAGGACACGACCGACGATAGCAAGAGTGTCGCAGTCTCGGCTTGGCCTATTTCAAAAACTCACTCAGAAATATTGAACAACAATGATGATTTGACTGATCAGGTTGTCAAGGAGAACAAAACGGAGGCTGCTACAAGCTGTAGATTGTTCGGGATTGATCTTAATGATCCTCGCACGAACACTCCTAAGGTGTCTGAGTATGCAGCAAATGTATTTGGAGTCACCTCTGAGGGATGCGTTGCCGCTCCCATGTCAAGAACTGATGCAGACCAAAATAAGTTTGATATCTCAAAGGCTTCAAAAGAAAGGAAACAAGAACAGCTACCGATATCTCCAAATGAAACACAAAGCAAGCAAACCAATAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCGGTGGACTTGACTGCGTTGGATGGTTATGATCAACTTATTGATGAATTAGAGAAGCTGTTTGACATGAAGGGACAGATCCATCCTAGGAATAAATGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCGGAATTTTGCAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAAGATGTGCACAAAATGAGCTCAGGGACCAAATTACCTATCTCATCACTAGAAGAAACTGTAATAAGCTCAGACACAGCTGAGATATGA

Protein sequence

>MsaT037757.1

MMMNNGEENELYEQLWKACAGPHVEVPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPNKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTSLDPCPAEPPRPRTHSFSKVLTNSDTSTHGGFSVLRKHATECLPSLDMSQSTPTQELVAKDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGHNGELRVGVRHLASPQSCMPSSVISGQSMHLGVLATASHAVATQTLFVVYYKPRMSQFIISVNKYMEAINQKFSVGMRFKMSFDGDDSSETDKRFSGTIIGQEDISSHWLNSKWRSLKVQWDDAASIPRPDRISPWEIEPLLASAPTTIQPPAAKYKRPRLPSDVPDFGDTTVGDSTYWENGLTQSDVTQVNNIMSENIRNDGMHLWHHKQTDNSSSNGLSRNLTDGSWLSSPHSSGPSHLCQDTTDDSKSVAVSAWPISKTHSEILNNNDDLTDQVVKENKTEAATSCRLFGIDLNDPRTNTPKVSEYAANVFGVTSEGCVAAPMSRTDADQNKFDISKASKERKQEQLPISPNETQSKQTNSRSCTKVQMQGVAVGRAVDLTALDGYDQLIDELEKLFDMKGQIHPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKMSSGTKLPISSLEETVISSDTAEI*