Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037789 | KEH22976.1 | 86.614 | 508 | 47 | 2 | 1 | 508 | 1 | 487 | 0.0 | 853 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037789 | sp|Q9ATB4|TAD2B_ARATH | 54.941 | 506 | 173 | 11 | 18 | 506 | 18 | 485 | 0.0 | 520 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037789 | tr|A0A072U0P5|A0A072U0P5_MEDTR | 86.614 | 508 | 47 | 2 | 1 | 508 | 1 | 487 | 0.0 | 853 |
Gene ID | Type | Classification |
---|---|---|
MsaG037789 | TF | MYB-related |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037789 | MtrunA17_Chr7g0239471 | 86.614 | 508 | 47 | 2 | 1 | 508 | 1 | 487 | 0.0 | 853 |
MsaG037789 | MtrunA17_Chr2g0290321 | 72.253 | 537 | 99 | 8 | 18 | 508 | 19 | 551 | 0.0 | 753 |
MsaG037789 | MtrunA17_Chr2g0290341 | 66.151 | 517 | 104 | 7 | 34 | 508 | 19 | 506 | 0.0 | 658 |
MsaG037789 | MtrunA17_Chr3g0120841 | 47.283 | 552 | 236 | 10 | 7 | 504 | 10 | 560 | 1.12e-150 | 442 |
MsaG037789 | MtrunA17_Chr3g0120231 | 65.865 | 208 | 59 | 1 | 313 | 508 | 2 | 209 | 1.39e-86 | 265 |
MsaG037789 | MtrunA17_Chr3g0120201 | 46.743 | 261 | 120 | 5 | 258 | 504 | 6 | 261 | 2.08e-68 | 220 |
MsaG037789 | MtrunA17_Chr3g0120221 | 59.064 | 171 | 68 | 1 | 18 | 186 | 16 | 186 | 2.75e-67 | 214 |
MsaG037789 | MtrunA17_Chr7g0238851 | 87.013 | 77 | 10 | 0 | 19 | 95 | 5 | 81 | 1.11e-34 | 125 |
MsaG037789 | MtrunA17_Chr3g0120191 | 61.644 | 73 | 28 | 0 | 107 | 179 | 11 | 83 | 4.47e-28 | 108 |
MsaG037789 | MtrunA17_Chr3g0120181 | 70.690 | 58 | 17 | 0 | 38 | 95 | 2 | 59 | 3.05e-26 | 101 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG037789 | AT4G16420.3 | 54.851 | 505 | 174 | 10 | 18 | 506 | 18 | 484 | 0.0 | 520 |
MsaG037789 | AT4G16420.1 | 54.941 | 506 | 173 | 11 | 18 | 506 | 18 | 485 | 0.0 | 520 |
MsaG037789 | AT4G16420.2 | 54.348 | 506 | 172 | 9 | 18 | 506 | 18 | 481 | 0.0 | 518 |
MsaG037789 | AT3G07740.1 | 43.561 | 528 | 254 | 8 | 19 | 506 | 22 | 545 | 5.24e-137 | 407 |
MsaG037789 | AT3G07740.3 | 43.615 | 509 | 244 | 7 | 37 | 506 | 20 | 524 | 1.93e-135 | 402 |
MsaG037789 | AT3G07740.4 | 42.991 | 535 | 254 | 9 | 19 | 506 | 22 | 552 | 2.53e-134 | 400 |
MsaG037789 | AT3G07740.2 | 43.187 | 477 | 228 | 7 | 69 | 506 | 2 | 474 | 8.07e-122 | 365 |
Find 115 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACACATAAGTCAAAATT+TGG | 0.161708 | 7:+65227626 | None:intergenic |
CCGTCGTTTCTTGAGGATTT+TGG | 0.167305 | 7:+65226387 | None:intergenic |
TATATTATAGGATCGGATTC+TGG | 0.183755 | 7:-65226628 | MsaT037789.1:intron |
AAATGTATGGCATGAATAAC+TGG | 0.272278 | 7:-65227129 | MsaT037789.1:CDS |
ACAGACTCCTCAAGAAATTC+TGG | 0.286197 | 7:-65226420 | MsaT037789.1:intron |
AGTAGCTCGCCCTGCAGGTC+TGG | 0.289473 | 7:+65225627 | None:intergenic |
AAACGTCTGTGCTGCGAGTT+AGG | 0.293920 | 7:-65225449 | MsaT037789.1:CDS |
AGTTCTGTGTTCAGAGATAA+TGG | 0.309266 | 7:+65225908 | None:intergenic |
GAAAAGAATTCAAGAGCTTA+AGG | 0.314875 | 7:-65225883 | MsaT037789.1:intron |
AAGAAACGACGGCCCTTCTT+TGG | 0.315629 | 7:-65226376 | MsaT037789.1:CDS |
ATGCTCATTAAGAAGGGATT+TGG | 0.323014 | 7:-65225293 | MsaT037789.1:CDS |
ATGTGGTCCCGAACAATTGC+GGG | 0.328004 | 7:-65225687 | MsaT037789.1:CDS |
CTCTCCATGCTTCCCTCTTC+CGG | 0.329198 | 7:-65227032 | MsaT037789.1:intron |
TGATACGTATCTATAATAAA+AGG | 0.333141 | 7:-65226221 | MsaT037789.1:intron |
ACAAAAGCAATCATGCTTAC+AGG | 0.334147 | 7:-65227571 | MsaT037789.1:CDS |
TCCCTCTCATTTGCCCCGAC+TGG | 0.345302 | 7:-65227307 | MsaT037789.1:CDS |
TTGGAACCCCGCAATTGTTC+GGG | 0.352331 | 7:+65225680 | None:intergenic |
ACACTATAGGATTGTGTACT+TGG | 0.367311 | 7:-65227056 | MsaT037789.1:CDS |
TGAGCAATTACTCGCTGATA+TGG | 0.392529 | 7:-65226292 | MsaT037789.1:CDS |
TACTGTAATATCGATATTAC+AGG | 0.392999 | 7:-65227677 | MsaT037789.1:CDS |
TTCAAGTTATGTCAATGAAA+TGG | 0.396353 | 7:-65225605 | MsaT037789.1:CDS |
GGCACACGGCACACTTAATC+CGG | 0.397403 | 7:+65227648 | None:intergenic |
ATACACCATGTCAACTTTCA+TGG | 0.399055 | 7:+65225319 | None:intergenic |
TTTGGAACCCCGCAATTGTT+CGG | 0.400298 | 7:+65225679 | None:intergenic |
GATGTTAAATCCTTCTCAAA+TGG | 0.404781 | 7:+65226011 | None:intergenic |
TCCGCAGACATCAAGGCATT+TGG | 0.409190 | 7:+65225661 | None:intergenic |
TGCAGGTGGAACTAACAAAA+AGG | 0.414771 | 7:-65226584 | MsaT037789.1:CDS |
AGTGGAAATAACTCAGAATC+TGG | 0.415824 | 7:-65228312 | MsaT037789.1:CDS |
TAGGACATGTCTCATGTTGT+TGG | 0.423324 | 7:-65226919 | MsaT037789.1:CDS |
TCTTCATCCGCGTTCCAGTC+GGG | 0.425170 | 7:+65227293 | None:intergenic |
TCTGCTGATCCCAGACCTGC+AGG | 0.434755 | 7:-65225637 | MsaT037789.1:CDS |
ATATTATAGGATCGGATTCT+GGG | 0.435344 | 7:-65226627 | MsaT037789.1:intron |
AACTCAGAATCTGGAGCTGC+AGG | 0.438593 | 7:-65228303 | MsaT037789.1:intron |
TCTTGCCATGGGGAAAGGGC+AGG | 0.439550 | 7:-65226878 | MsaT037789.1:CDS |
GTAGCTCGCCCTGCAGGTCT+GGG | 0.445211 | 7:+65225628 | None:intergenic |
AAGTTGAAGAAAGTGCCCTT+AGG | 0.448564 | 7:-65225726 | MsaT037789.1:CDS |
GTTCATGCGCTTTCATACTA+AGG | 0.450239 | 7:-65225955 | MsaT037789.1:CDS |
CTGTCAGTACAAATGATTGC+TGG | 0.451807 | 7:-65225389 | MsaT037789.1:CDS |
TCCAATAGAGACCGGGGAAA+AGG | 0.466367 | 7:-65226559 | MsaT037789.1:CDS |
AACTTCTTGCCATGGGGAAA+GGG | 0.466541 | 7:-65226882 | MsaT037789.1:CDS |
GGATTTAACATCAGAGGAAA+AGG | 0.470770 | 7:-65226000 | MsaT037789.1:CDS |
AGGCATGCACTGAACACTAT+AGG | 0.474478 | 7:-65227069 | MsaT037789.1:CDS |
CAACACATAAGTCAAAATTT+GGG | 0.475549 | 7:+65227627 | None:intergenic |
TTGTAGGGACTTGAAATGTA+TGG | 0.477689 | 7:-65227142 | MsaT037789.1:intron |
AAGGAGCGGGTGAAGCGAAA+AGG | 0.478432 | 7:-65227718 | MsaT037789.1:CDS |
AAGCACTTTCTCTTGCCCTA+AGG | 0.483082 | 7:+65225710 | None:intergenic |
GAACTTCTTGCCATGGGGAA+AGG | 0.484313 | 7:-65226883 | MsaT037789.1:CDS |
CCACTAGCTTCAACCAAAGA+AGG | 0.487227 | 7:+65226363 | None:intergenic |
CTTGAAGTAGCTCGCCCTGC+AGG | 0.492075 | 7:+65225622 | None:intergenic |
TTCTTCATCCGCGTTCCAGT+CGG | 0.492141 | 7:+65227292 | None:intergenic |
AGGACATGTCTCATGTTGTT+GGG | 0.493324 | 7:-65226918 | MsaT037789.1:CDS |
CTTCATCCGCGTTCCAGTCG+GGG | 0.497867 | 7:+65227294 | None:intergenic |
TCGCAGGAAGCTCGTGCTGT+TGG | 0.499037 | 7:-65225766 | MsaT037789.1:intron |
GAAGCATCTCATACCGGAAG+AGG | 0.499604 | 7:+65227019 | None:intergenic |
GTATGATATGCTCATTAAGA+AGG | 0.500449 | 7:-65225300 | MsaT037789.1:CDS |
TCGATATTACAGGACAAATC+CGG | 0.502784 | 7:-65227667 | MsaT037789.1:CDS |
GCAGCATGTGTCTTGACTGA+GGG | 0.510463 | 7:+65226604 | None:intergenic |
AGCACTTTCTCTTGCCCTAA+GGG | 0.511703 | 7:+65225711 | None:intergenic |
CCTTCTTTGGTTGAAGCTAG+TGG | 0.513297 | 7:-65226363 | MsaT037789.1:CDS |
AGTTGAAGAAAGTGCCCTTA+GGG | 0.513617 | 7:-65225725 | MsaT037789.1:CDS |
AACGTCTGTGCTGCGAGTTA+GGG | 0.514367 | 7:-65225448 | MsaT037789.1:CDS |
CTAGTGGTTATAACCCGAAA+AGG | 0.518651 | 7:-65226347 | MsaT037789.1:CDS |
TGCTCATCGGATGTTCCAGC+TGG | 0.519198 | 7:-65225345 | MsaT037789.1:CDS |
CAACTTTCATGGTATCCAGC+TGG | 0.530057 | 7:+65225330 | None:intergenic |
ATCTTCAGATACACAGTTGG+AGG | 0.533593 | 7:+65225422 | None:intergenic |
AGGAGCGGGTGAAGCGAAAA+GGG | 0.534590 | 7:-65227717 | MsaT037789.1:CDS |
AAAAGGCATCCAATAGAGAC+CGG | 0.535884 | 7:-65226567 | MsaT037789.1:CDS |
TCAGTCAAGACACATGCTGC+AGG | 0.536875 | 7:-65226601 | MsaT037789.1:CDS |
ATCACCCTGCCCTTTCCCCA+TGG | 0.538821 | 7:+65226873 | None:intergenic |
TGAGAAGGATTTAACATCAG+AGG | 0.540149 | 7:-65226006 | MsaT037789.1:CDS |
CTTCAAAATCCGATGCTCAT+CGG | 0.540300 | 7:-65225358 | MsaT037789.1:CDS |
CAGAGAAGAACTTCTTGCCA+TGG | 0.541694 | 7:-65226890 | MsaT037789.1:CDS |
AGAAGGGCCGTCGTTTCTTG+AGG | 0.547054 | 7:+65226380 | None:intergenic |
GGCAAGAGAAAGTGCTTATG+TGG | 0.547957 | 7:-65225704 | MsaT037789.1:CDS |
CAAAAGCAATCATGCTTACA+GGG | 0.548051 | 7:-65227570 | MsaT037789.1:CDS |
AGAGAAGAACTTCTTGCCAT+GGG | 0.548697 | 7:-65226889 | MsaT037789.1:CDS |
CTTGCCATGGGGAAAGGGCA+GGG | 0.550128 | 7:-65226877 | MsaT037789.1:CDS |
TGGTTATAACCCGAAAAGGC+AGG | 0.554434 | 7:-65226343 | MsaT037789.1:CDS |
TGCATCTTCAGATACACAGT+TGG | 0.554518 | 7:+65225419 | None:intergenic |
AGCAGAGTCCGCAGACATCA+AGG | 0.554768 | 7:+65225654 | None:intergenic |
GGAAGAAATTCATACTTGAA+AGG | 0.555899 | 7:-65226052 | MsaT037789.1:CDS |
TTCCAGTCGGGGCAAATGAG+AGG | 0.561768 | 7:+65227305 | None:intergenic |
TGCAGCATGTGTCTTGACTG+AGG | 0.563434 | 7:+65226603 | None:intergenic |
CTGGAACATCCGATGAGCAT+CGG | 0.579223 | 7:+65225349 | None:intergenic |
GTCAATGAAATGGATGCTGC+AGG | 0.580740 | 7:-65225595 | MsaT037789.1:CDS |
AAAGGCATCCAATAGAGACC+GGG | 0.584827 | 7:-65226566 | MsaT037789.1:CDS |
ATTTCCTCCAGAATTTCTTG+AGG | 0.585270 | 7:+65226413 | None:intergenic |
TCCAGTCGGGGCAAATGAGA+GGG | 0.588487 | 7:+65227306 | None:intergenic |
ATATGCAAATCCATTTGAGA+AGG | 0.591672 | 7:-65226021 | MsaT037789.1:CDS |
TGTGAGTTAGGTCAAGGAGC+GGG | 0.592638 | 7:-65227731 | MsaT037789.1:intron |
TATGATATGCTCATTAAGAA+GGG | 0.593230 | 7:-65225299 | MsaT037789.1:CDS |
CACTAGCTTCAACCAAAGAA+GGG | 0.597471 | 7:+65226364 | None:intergenic |
CTGCTGATCCCAGACCTGCA+GGG | 0.599308 | 7:-65225636 | MsaT037789.1:CDS |
CATTTGCCCCGACTGGAACG+CGG | 0.599728 | 7:-65227300 | MsaT037789.1:CDS |
CAATCATGCTTACAGGGTCA+TGG | 0.600463 | 7:-65227564 | MsaT037789.1:intron |
GAAGAAGTTGCTGAGCATGT+TGG | 0.602780 | 7:-65227106 | MsaT037789.1:CDS |
GTCAAGACACATGCTGCAGG+TGG | 0.607552 | 7:-65226598 | MsaT037789.1:CDS |
AAGCATCTCATACCGGAAGA+GGG | 0.618355 | 7:+65227020 | None:intergenic |
CATACCGGAAGAGGGAAGCA+TGG | 0.621701 | 7:+65227028 | None:intergenic |
GACTCCTCAAGAAATTCTGG+AGG | 0.622144 | 7:-65226417 | MsaT037789.1:CDS |
GGGCAGGGTGATGACAAGAA+AGG | 0.622437 | 7:-65226862 | MsaT037789.1:intron |
TCCAAATGCCTTGATGTCTG+CGG | 0.623348 | 7:-65225662 | MsaT037789.1:CDS |
TATGTGGTCCCGAACAATTG+CGG | 0.625973 | 7:-65225688 | MsaT037789.1:CDS |
CCAAAATCCTCAAGAAACGA+CGG | 0.647065 | 7:-65226387 | MsaT037789.1:CDS |
TAAGTCAAAATTTGGGCACA+CGG | 0.651063 | 7:+65227634 | None:intergenic |
TGTGTATCTGAAGATGCAAG+AGG | 0.661370 | 7:-65225414 | MsaT037789.1:CDS |
GGCTTGATGAAAGAGAGCGC+AGG | 0.663647 | 7:-65226073 | MsaT037789.1:CDS |
TGTGGTCCCGAACAATTGCG+GGG | 0.670717 | 7:-65225686 | MsaT037789.1:CDS |
AAGGCATCCAATAGAGACCG+GGG | 0.671703 | 7:-65226565 | MsaT037789.1:CDS |
AATGTATGGCATGAATAACT+GGG | 0.679265 | 7:-65227128 | MsaT037789.1:CDS |
TTGTGAGTTAGGTCAAGGAG+CGG | 0.679425 | 7:-65227732 | MsaT037789.1:intron |
TGTTGGAACAAAGAACAAAG+AGG | 0.696475 | 7:-65227089 | MsaT037789.1:CDS |
GGATACCATGAAAGTTGACA+TGG | 0.698778 | 7:-65225324 | MsaT037789.1:CDS |
GAGAAGAACTTCTTGCCATG+GGG | 0.705178 | 7:-65226888 | MsaT037789.1:CDS |
GTTTAATGACTCTGACACTG+CGG | 0.770377 | 7:-65226268 | MsaT037789.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 65225283 | 65229754 | 65225283 | ID=MsaG037789 |
Chr7 | mRNA | 65225283 | 65229754 | 65225283 | ID=MsaT037789.1;Parent=MsaG037789 |
Chr7 | exon | 65225283 | 65225474 | 65225283 | ID=MsaT037789.1.exon12;Parent=MsaT037789.1 |
Chr7 | CDS | 65225283 | 65225474 | 65225283 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65225573 | 65225782 | 65225573 | ID=MsaT037789.1.exon11;Parent=MsaT037789.1 |
Chr7 | CDS | 65225573 | 65225782 | 65225573 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65225884 | 65226094 | 65225884 | ID=MsaT037789.1.exon10;Parent=MsaT037789.1 |
Chr7 | CDS | 65225884 | 65226094 | 65225884 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65226222 | 65226438 | 65226222 | ID=MsaT037789.1.exon9;Parent=MsaT037789.1 |
Chr7 | CDS | 65226222 | 65226438 | 65226222 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65226542 | 65226640 | 65226542 | ID=MsaT037789.1.exon8;Parent=MsaT037789.1 |
Chr7 | CDS | 65226542 | 65226640 | 65226542 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65226688 | 65226732 | 65226688 | ID=MsaT037789.1.exon7;Parent=MsaT037789.1 |
Chr7 | CDS | 65226688 | 65226732 | 65226688 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65226863 | 65226938 | 65226863 | ID=MsaT037789.1.exon6;Parent=MsaT037789.1 |
Chr7 | CDS | 65226863 | 65226938 | 65226863 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65227033 | 65227158 | 65227033 | ID=MsaT037789.1.exon5;Parent=MsaT037789.1 |
Chr7 | CDS | 65227033 | 65227158 | 65227033 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65227277 | 65227342 | 65227277 | ID=MsaT037789.1.exon4;Parent=MsaT037789.1 |
Chr7 | CDS | 65227277 | 65227342 | 65227277 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65227565 | 65227743 | 65227565 | ID=MsaT037789.1.exon3;Parent=MsaT037789.1 |
Chr7 | CDS | 65227565 | 65227743 | 65227565 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65228304 | 65228359 | 65228304 | ID=MsaT037789.1.exon2;Parent=MsaT037789.1 |
Chr7 | CDS | 65228304 | 65228359 | 65228304 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Chr7 | exon | 65229705 | 65229754 | 65229705 | ID=MsaT037789.1.exon1;Parent=MsaT037789.1 |
Chr7 | CDS | 65229705 | 65229754 | 65229705 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
Gene Sequence |
Protein sequence |