Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG037789 | KEH22976.1 | 86.614 | 508 | 47 | 2 | 1 | 508 | 1 | 487 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG037789 | sp|Q9ATB4|TAD2B_ARATH | 54.941 | 506 | 173 | 11 | 18 | 506 | 18 | 485 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG037789 | tr|A0A072U0P5|A0A072U0P5_MEDTR | 86.614 | 508 | 47 | 2 | 1 | 508 | 1 | 487 | 0.0 | 853 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG037789 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG037789 | MtrunA17_Chr7g0239471 | 86.614 | 508 | 47 | 2 | 1 | 508 | 1 | 487 | 0.0 | 853 |
| MsaG037789 | MtrunA17_Chr2g0290321 | 72.253 | 537 | 99 | 8 | 18 | 508 | 19 | 551 | 0.0 | 753 |
| MsaG037789 | MtrunA17_Chr2g0290341 | 66.151 | 517 | 104 | 7 | 34 | 508 | 19 | 506 | 0.0 | 658 |
| MsaG037789 | MtrunA17_Chr3g0120841 | 47.283 | 552 | 236 | 10 | 7 | 504 | 10 | 560 | 1.12e-150 | 442 |
| MsaG037789 | MtrunA17_Chr3g0120231 | 65.865 | 208 | 59 | 1 | 313 | 508 | 2 | 209 | 1.39e-86 | 265 |
| MsaG037789 | MtrunA17_Chr3g0120201 | 46.743 | 261 | 120 | 5 | 258 | 504 | 6 | 261 | 2.08e-68 | 220 |
| MsaG037789 | MtrunA17_Chr3g0120221 | 59.064 | 171 | 68 | 1 | 18 | 186 | 16 | 186 | 2.75e-67 | 214 |
| MsaG037789 | MtrunA17_Chr7g0238851 | 87.013 | 77 | 10 | 0 | 19 | 95 | 5 | 81 | 1.11e-34 | 125 |
| MsaG037789 | MtrunA17_Chr3g0120191 | 61.644 | 73 | 28 | 0 | 107 | 179 | 11 | 83 | 4.47e-28 | 108 |
| MsaG037789 | MtrunA17_Chr3g0120181 | 70.690 | 58 | 17 | 0 | 38 | 95 | 2 | 59 | 3.05e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG037789 | AT4G16420.3 | 54.851 | 505 | 174 | 10 | 18 | 506 | 18 | 484 | 0.0 | 520 |
| MsaG037789 | AT4G16420.1 | 54.941 | 506 | 173 | 11 | 18 | 506 | 18 | 485 | 0.0 | 520 |
| MsaG037789 | AT4G16420.2 | 54.348 | 506 | 172 | 9 | 18 | 506 | 18 | 481 | 0.0 | 518 |
| MsaG037789 | AT3G07740.1 | 43.561 | 528 | 254 | 8 | 19 | 506 | 22 | 545 | 5.24e-137 | 407 |
| MsaG037789 | AT3G07740.3 | 43.615 | 509 | 244 | 7 | 37 | 506 | 20 | 524 | 1.93e-135 | 402 |
| MsaG037789 | AT3G07740.4 | 42.991 | 535 | 254 | 9 | 19 | 506 | 22 | 552 | 2.53e-134 | 400 |
| MsaG037789 | AT3G07740.2 | 43.187 | 477 | 228 | 7 | 69 | 506 | 2 | 474 | 8.07e-122 | 365 |
Find 115 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACACATAAGTCAAAATT+TGG | 0.161708 | 7:+65227626 | None:intergenic |
| CCGTCGTTTCTTGAGGATTT+TGG | 0.167305 | 7:+65226387 | None:intergenic |
| TATATTATAGGATCGGATTC+TGG | 0.183755 | 7:-65226628 | MsaT037789.1:intron |
| AAATGTATGGCATGAATAAC+TGG | 0.272278 | 7:-65227129 | MsaT037789.1:CDS |
| ACAGACTCCTCAAGAAATTC+TGG | 0.286197 | 7:-65226420 | MsaT037789.1:intron |
| AGTAGCTCGCCCTGCAGGTC+TGG | 0.289473 | 7:+65225627 | None:intergenic |
| AAACGTCTGTGCTGCGAGTT+AGG | 0.293920 | 7:-65225449 | MsaT037789.1:CDS |
| AGTTCTGTGTTCAGAGATAA+TGG | 0.309266 | 7:+65225908 | None:intergenic |
| GAAAAGAATTCAAGAGCTTA+AGG | 0.314875 | 7:-65225883 | MsaT037789.1:intron |
| AAGAAACGACGGCCCTTCTT+TGG | 0.315629 | 7:-65226376 | MsaT037789.1:CDS |
| ATGCTCATTAAGAAGGGATT+TGG | 0.323014 | 7:-65225293 | MsaT037789.1:CDS |
| ATGTGGTCCCGAACAATTGC+GGG | 0.328004 | 7:-65225687 | MsaT037789.1:CDS |
| CTCTCCATGCTTCCCTCTTC+CGG | 0.329198 | 7:-65227032 | MsaT037789.1:intron |
| TGATACGTATCTATAATAAA+AGG | 0.333141 | 7:-65226221 | MsaT037789.1:intron |
| ACAAAAGCAATCATGCTTAC+AGG | 0.334147 | 7:-65227571 | MsaT037789.1:CDS |
| TCCCTCTCATTTGCCCCGAC+TGG | 0.345302 | 7:-65227307 | MsaT037789.1:CDS |
| TTGGAACCCCGCAATTGTTC+GGG | 0.352331 | 7:+65225680 | None:intergenic |
| ACACTATAGGATTGTGTACT+TGG | 0.367311 | 7:-65227056 | MsaT037789.1:CDS |
| TGAGCAATTACTCGCTGATA+TGG | 0.392529 | 7:-65226292 | MsaT037789.1:CDS |
| TACTGTAATATCGATATTAC+AGG | 0.392999 | 7:-65227677 | MsaT037789.1:CDS |
| TTCAAGTTATGTCAATGAAA+TGG | 0.396353 | 7:-65225605 | MsaT037789.1:CDS |
| GGCACACGGCACACTTAATC+CGG | 0.397403 | 7:+65227648 | None:intergenic |
| ATACACCATGTCAACTTTCA+TGG | 0.399055 | 7:+65225319 | None:intergenic |
| TTTGGAACCCCGCAATTGTT+CGG | 0.400298 | 7:+65225679 | None:intergenic |
| GATGTTAAATCCTTCTCAAA+TGG | 0.404781 | 7:+65226011 | None:intergenic |
| TCCGCAGACATCAAGGCATT+TGG | 0.409190 | 7:+65225661 | None:intergenic |
| TGCAGGTGGAACTAACAAAA+AGG | 0.414771 | 7:-65226584 | MsaT037789.1:CDS |
| AGTGGAAATAACTCAGAATC+TGG | 0.415824 | 7:-65228312 | MsaT037789.1:CDS |
| TAGGACATGTCTCATGTTGT+TGG | 0.423324 | 7:-65226919 | MsaT037789.1:CDS |
| TCTTCATCCGCGTTCCAGTC+GGG | 0.425170 | 7:+65227293 | None:intergenic |
| TCTGCTGATCCCAGACCTGC+AGG | 0.434755 | 7:-65225637 | MsaT037789.1:CDS |
| ATATTATAGGATCGGATTCT+GGG | 0.435344 | 7:-65226627 | MsaT037789.1:intron |
| AACTCAGAATCTGGAGCTGC+AGG | 0.438593 | 7:-65228303 | MsaT037789.1:intron |
| TCTTGCCATGGGGAAAGGGC+AGG | 0.439550 | 7:-65226878 | MsaT037789.1:CDS |
| GTAGCTCGCCCTGCAGGTCT+GGG | 0.445211 | 7:+65225628 | None:intergenic |
| AAGTTGAAGAAAGTGCCCTT+AGG | 0.448564 | 7:-65225726 | MsaT037789.1:CDS |
| GTTCATGCGCTTTCATACTA+AGG | 0.450239 | 7:-65225955 | MsaT037789.1:CDS |
| CTGTCAGTACAAATGATTGC+TGG | 0.451807 | 7:-65225389 | MsaT037789.1:CDS |
| TCCAATAGAGACCGGGGAAA+AGG | 0.466367 | 7:-65226559 | MsaT037789.1:CDS |
| AACTTCTTGCCATGGGGAAA+GGG | 0.466541 | 7:-65226882 | MsaT037789.1:CDS |
| GGATTTAACATCAGAGGAAA+AGG | 0.470770 | 7:-65226000 | MsaT037789.1:CDS |
| AGGCATGCACTGAACACTAT+AGG | 0.474478 | 7:-65227069 | MsaT037789.1:CDS |
| CAACACATAAGTCAAAATTT+GGG | 0.475549 | 7:+65227627 | None:intergenic |
| TTGTAGGGACTTGAAATGTA+TGG | 0.477689 | 7:-65227142 | MsaT037789.1:intron |
| AAGGAGCGGGTGAAGCGAAA+AGG | 0.478432 | 7:-65227718 | MsaT037789.1:CDS |
| AAGCACTTTCTCTTGCCCTA+AGG | 0.483082 | 7:+65225710 | None:intergenic |
| GAACTTCTTGCCATGGGGAA+AGG | 0.484313 | 7:-65226883 | MsaT037789.1:CDS |
| CCACTAGCTTCAACCAAAGA+AGG | 0.487227 | 7:+65226363 | None:intergenic |
| CTTGAAGTAGCTCGCCCTGC+AGG | 0.492075 | 7:+65225622 | None:intergenic |
| TTCTTCATCCGCGTTCCAGT+CGG | 0.492141 | 7:+65227292 | None:intergenic |
| AGGACATGTCTCATGTTGTT+GGG | 0.493324 | 7:-65226918 | MsaT037789.1:CDS |
| CTTCATCCGCGTTCCAGTCG+GGG | 0.497867 | 7:+65227294 | None:intergenic |
| TCGCAGGAAGCTCGTGCTGT+TGG | 0.499037 | 7:-65225766 | MsaT037789.1:intron |
| GAAGCATCTCATACCGGAAG+AGG | 0.499604 | 7:+65227019 | None:intergenic |
| GTATGATATGCTCATTAAGA+AGG | 0.500449 | 7:-65225300 | MsaT037789.1:CDS |
| TCGATATTACAGGACAAATC+CGG | 0.502784 | 7:-65227667 | MsaT037789.1:CDS |
| GCAGCATGTGTCTTGACTGA+GGG | 0.510463 | 7:+65226604 | None:intergenic |
| AGCACTTTCTCTTGCCCTAA+GGG | 0.511703 | 7:+65225711 | None:intergenic |
| CCTTCTTTGGTTGAAGCTAG+TGG | 0.513297 | 7:-65226363 | MsaT037789.1:CDS |
| AGTTGAAGAAAGTGCCCTTA+GGG | 0.513617 | 7:-65225725 | MsaT037789.1:CDS |
| AACGTCTGTGCTGCGAGTTA+GGG | 0.514367 | 7:-65225448 | MsaT037789.1:CDS |
| CTAGTGGTTATAACCCGAAA+AGG | 0.518651 | 7:-65226347 | MsaT037789.1:CDS |
| TGCTCATCGGATGTTCCAGC+TGG | 0.519198 | 7:-65225345 | MsaT037789.1:CDS |
| CAACTTTCATGGTATCCAGC+TGG | 0.530057 | 7:+65225330 | None:intergenic |
| ATCTTCAGATACACAGTTGG+AGG | 0.533593 | 7:+65225422 | None:intergenic |
| AGGAGCGGGTGAAGCGAAAA+GGG | 0.534590 | 7:-65227717 | MsaT037789.1:CDS |
| AAAAGGCATCCAATAGAGAC+CGG | 0.535884 | 7:-65226567 | MsaT037789.1:CDS |
| TCAGTCAAGACACATGCTGC+AGG | 0.536875 | 7:-65226601 | MsaT037789.1:CDS |
| ATCACCCTGCCCTTTCCCCA+TGG | 0.538821 | 7:+65226873 | None:intergenic |
| TGAGAAGGATTTAACATCAG+AGG | 0.540149 | 7:-65226006 | MsaT037789.1:CDS |
| CTTCAAAATCCGATGCTCAT+CGG | 0.540300 | 7:-65225358 | MsaT037789.1:CDS |
| CAGAGAAGAACTTCTTGCCA+TGG | 0.541694 | 7:-65226890 | MsaT037789.1:CDS |
| AGAAGGGCCGTCGTTTCTTG+AGG | 0.547054 | 7:+65226380 | None:intergenic |
| GGCAAGAGAAAGTGCTTATG+TGG | 0.547957 | 7:-65225704 | MsaT037789.1:CDS |
| CAAAAGCAATCATGCTTACA+GGG | 0.548051 | 7:-65227570 | MsaT037789.1:CDS |
| AGAGAAGAACTTCTTGCCAT+GGG | 0.548697 | 7:-65226889 | MsaT037789.1:CDS |
| CTTGCCATGGGGAAAGGGCA+GGG | 0.550128 | 7:-65226877 | MsaT037789.1:CDS |
| TGGTTATAACCCGAAAAGGC+AGG | 0.554434 | 7:-65226343 | MsaT037789.1:CDS |
| TGCATCTTCAGATACACAGT+TGG | 0.554518 | 7:+65225419 | None:intergenic |
| AGCAGAGTCCGCAGACATCA+AGG | 0.554768 | 7:+65225654 | None:intergenic |
| GGAAGAAATTCATACTTGAA+AGG | 0.555899 | 7:-65226052 | MsaT037789.1:CDS |
| TTCCAGTCGGGGCAAATGAG+AGG | 0.561768 | 7:+65227305 | None:intergenic |
| TGCAGCATGTGTCTTGACTG+AGG | 0.563434 | 7:+65226603 | None:intergenic |
| CTGGAACATCCGATGAGCAT+CGG | 0.579223 | 7:+65225349 | None:intergenic |
| GTCAATGAAATGGATGCTGC+AGG | 0.580740 | 7:-65225595 | MsaT037789.1:CDS |
| AAAGGCATCCAATAGAGACC+GGG | 0.584827 | 7:-65226566 | MsaT037789.1:CDS |
| ATTTCCTCCAGAATTTCTTG+AGG | 0.585270 | 7:+65226413 | None:intergenic |
| TCCAGTCGGGGCAAATGAGA+GGG | 0.588487 | 7:+65227306 | None:intergenic |
| ATATGCAAATCCATTTGAGA+AGG | 0.591672 | 7:-65226021 | MsaT037789.1:CDS |
| TGTGAGTTAGGTCAAGGAGC+GGG | 0.592638 | 7:-65227731 | MsaT037789.1:intron |
| TATGATATGCTCATTAAGAA+GGG | 0.593230 | 7:-65225299 | MsaT037789.1:CDS |
| CACTAGCTTCAACCAAAGAA+GGG | 0.597471 | 7:+65226364 | None:intergenic |
| CTGCTGATCCCAGACCTGCA+GGG | 0.599308 | 7:-65225636 | MsaT037789.1:CDS |
| CATTTGCCCCGACTGGAACG+CGG | 0.599728 | 7:-65227300 | MsaT037789.1:CDS |
| CAATCATGCTTACAGGGTCA+TGG | 0.600463 | 7:-65227564 | MsaT037789.1:intron |
| GAAGAAGTTGCTGAGCATGT+TGG | 0.602780 | 7:-65227106 | MsaT037789.1:CDS |
| GTCAAGACACATGCTGCAGG+TGG | 0.607552 | 7:-65226598 | MsaT037789.1:CDS |
| AAGCATCTCATACCGGAAGA+GGG | 0.618355 | 7:+65227020 | None:intergenic |
| CATACCGGAAGAGGGAAGCA+TGG | 0.621701 | 7:+65227028 | None:intergenic |
| GACTCCTCAAGAAATTCTGG+AGG | 0.622144 | 7:-65226417 | MsaT037789.1:CDS |
| GGGCAGGGTGATGACAAGAA+AGG | 0.622437 | 7:-65226862 | MsaT037789.1:intron |
| TCCAAATGCCTTGATGTCTG+CGG | 0.623348 | 7:-65225662 | MsaT037789.1:CDS |
| TATGTGGTCCCGAACAATTG+CGG | 0.625973 | 7:-65225688 | MsaT037789.1:CDS |
| CCAAAATCCTCAAGAAACGA+CGG | 0.647065 | 7:-65226387 | MsaT037789.1:CDS |
| TAAGTCAAAATTTGGGCACA+CGG | 0.651063 | 7:+65227634 | None:intergenic |
| TGTGTATCTGAAGATGCAAG+AGG | 0.661370 | 7:-65225414 | MsaT037789.1:CDS |
| GGCTTGATGAAAGAGAGCGC+AGG | 0.663647 | 7:-65226073 | MsaT037789.1:CDS |
| TGTGGTCCCGAACAATTGCG+GGG | 0.670717 | 7:-65225686 | MsaT037789.1:CDS |
| AAGGCATCCAATAGAGACCG+GGG | 0.671703 | 7:-65226565 | MsaT037789.1:CDS |
| AATGTATGGCATGAATAACT+GGG | 0.679265 | 7:-65227128 | MsaT037789.1:CDS |
| TTGTGAGTTAGGTCAAGGAG+CGG | 0.679425 | 7:-65227732 | MsaT037789.1:intron |
| TGTTGGAACAAAGAACAAAG+AGG | 0.696475 | 7:-65227089 | MsaT037789.1:CDS |
| GGATACCATGAAAGTTGACA+TGG | 0.698778 | 7:-65225324 | MsaT037789.1:CDS |
| GAGAAGAACTTCTTGCCATG+GGG | 0.705178 | 7:-65226888 | MsaT037789.1:CDS |
| GTTTAATGACTCTGACACTG+CGG | 0.770377 | 7:-65226268 | MsaT037789.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 65225283 | 65229754 | 65225283 | ID=MsaG037789 |
| Chr7 | mRNA | 65225283 | 65229754 | 65225283 | ID=MsaT037789.1;Parent=MsaG037789 |
| Chr7 | exon | 65225283 | 65225474 | 65225283 | ID=MsaT037789.1.exon12;Parent=MsaT037789.1 |
| Chr7 | CDS | 65225283 | 65225474 | 65225283 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65225573 | 65225782 | 65225573 | ID=MsaT037789.1.exon11;Parent=MsaT037789.1 |
| Chr7 | CDS | 65225573 | 65225782 | 65225573 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65225884 | 65226094 | 65225884 | ID=MsaT037789.1.exon10;Parent=MsaT037789.1 |
| Chr7 | CDS | 65225884 | 65226094 | 65225884 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65226222 | 65226438 | 65226222 | ID=MsaT037789.1.exon9;Parent=MsaT037789.1 |
| Chr7 | CDS | 65226222 | 65226438 | 65226222 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65226542 | 65226640 | 65226542 | ID=MsaT037789.1.exon8;Parent=MsaT037789.1 |
| Chr7 | CDS | 65226542 | 65226640 | 65226542 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65226688 | 65226732 | 65226688 | ID=MsaT037789.1.exon7;Parent=MsaT037789.1 |
| Chr7 | CDS | 65226688 | 65226732 | 65226688 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65226863 | 65226938 | 65226863 | ID=MsaT037789.1.exon6;Parent=MsaT037789.1 |
| Chr7 | CDS | 65226863 | 65226938 | 65226863 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65227033 | 65227158 | 65227033 | ID=MsaT037789.1.exon5;Parent=MsaT037789.1 |
| Chr7 | CDS | 65227033 | 65227158 | 65227033 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65227277 | 65227342 | 65227277 | ID=MsaT037789.1.exon4;Parent=MsaT037789.1 |
| Chr7 | CDS | 65227277 | 65227342 | 65227277 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65227565 | 65227743 | 65227565 | ID=MsaT037789.1.exon3;Parent=MsaT037789.1 |
| Chr7 | CDS | 65227565 | 65227743 | 65227565 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65228304 | 65228359 | 65228304 | ID=MsaT037789.1.exon2;Parent=MsaT037789.1 |
| Chr7 | CDS | 65228304 | 65228359 | 65228304 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Chr7 | exon | 65229705 | 65229754 | 65229705 | ID=MsaT037789.1.exon1;Parent=MsaT037789.1 |
| Chr7 | CDS | 65229705 | 65229754 | 65229705 | ID=cds.MsaT037789.1;Parent=MsaT037789.1 |
| Gene Sequence |
| Protein sequence |