AlfalfaGEDB | MsaG038061

M. sativa ssp. caerulea / MsaG038061

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0097159 GO:0140030 GO:0140034 GO:1901363
PFAM: PF12165.11

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038061	XP_013449145.1	100.000	242	0	0	1	242	1	242	4.30e-180	503

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038061	sp\|Q8H383\|ALFL2_ORYSJ	75.000	240	53	2	1	236	1	237	1.84e-119	343

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038061	tr\|A0A072U0H4\|A0A072U0H4_MEDTR	100.000	242	0	0	1	242	1	242	2.06e-180	503

TFs/TRs:

Gene ID	Type	Classification
MsaG038061	TF	Alfin-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004010	MsaG038061	0.812310	7.771950e-51	1.404469e-48
MsaG004588	MsaG038061	0.801015	1.840243e-48	2.545759e-46
MsaG005626	MsaG038061	0.805792	1.904445e-49	2.940969e-47
MsaG007290	MsaG038061	0.810948	1.531834e-50	2.677121e-48
MsaG008888	MsaG038061	0.806174	1.584348e-49	2.468856e-47
MsaG008877	MsaG038061	0.803514	5.661390e-49	8.292360e-47
MsaG015322	MsaG038061	0.807015	1.054849e-49	1.676676e-47
MsaG016911	MsaG038061	0.809537	3.076751e-50	5.195912e-48
MsaG017682	MsaG038061	0.816320	1.019740e-51	2.038412e-49
MsaG019149	MsaG038061	0.801267	1.634921e-48	2.274628e-46
MsaG019278	MsaG038061	0.822758	3.519345e-53	8.330032e-51
MsaG019507	MsaG038061	0.805743	1.950036e-49	3.007928e-47
MsaG021890	MsaG038061	0.830259	5.840827e-55	1.702924e-52
MsaG022609	MsaG038061	0.802472	9.273889e-49	1.326184e-46
MsaG022954	MsaG038061	0.804499	3.540743e-49	5.305935e-47
MsaG022981	MsaG038061	0.800124	2.789830e-48	3.782543e-46
MsaG024417	MsaG038061	0.805814	1.884089e-49	2.911073e-47
MsaG024909	MsaG038061	0.802027	1.143944e-48	1.619246e-46
MsaG025896	MsaG038061	0.819326	2.153110e-52	4.652244e-50
MsaG027581	MsaG038061	0.810269	2.143804e-50	3.685078e-48
MsaG028831	MsaG038061	0.809283	3.484998e-50	5.849073e-48
MsaG029284	MsaG038061	0.801821	1.260609e-48	1.776108e-46
MsaG036049	MsaG038061	0.810203	2.214714e-50	3.800839e-48
MsaG036385	MsaG038061	0.813274	4.790981e-51	8.868235e-49
MsaG037602	MsaG038061	0.820015	1.501390e-52	3.303494e-50
MsaG037662	MsaG038061	0.823173	2.819274e-53	6.748141e-51
MsaG038054	MsaG038061	0.844539	1.328979e-58	5.997845e-56
MsaG038057	MsaG038061	0.870056	3.958941e-66	4.598594e-63
MsaG038061	MsaG038062	0.819811	1.670874e-52	3.656390e-50
MsaG038061	MsaG039592	0.814479	2.607028e-51	4.973813e-49
MsaG038061	MsaG041510	0.810669	1.759211e-50	3.053597e-48
MsaG038061	MsaG046355	0.806031	1.697200e-49	2.635711e-47
MsaG038061	MsaG003317	0.832179	1.981203e-55	6.106325e-53
MsaG038061	MsaG009150	0.817579	5.336695e-52	1.101835e-49
MsaG038061	MsaG028769	0.810380	2.029870e-50	3.498769e-48
MsaG038061	MsaG037049	0.800863	1.976063e-48	2.724300e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038061	MtrunA17_Chr7g0242511	100.000	242	0	0	1	242	1	242	0.0	503
MsaG038061	MtrunA17_Chr4g0006381	90.984	244	18	3	1	242	1	242	1.83e-144	403
MsaG038061	MtrunA17_Chr4g0076771	61.355	251	87	4	1	241	4	254	1.03e-91	270
MsaG038061	MtrunA17_Chr8g0343441	57.831	249	93	5	6	242	8	256	4.10e-88	261
MsaG038061	MtrunA17_Chr1g0150821	59.459	259	79	5	6	242	9	263	7.55e-85	253
MsaG038061	MtrunA17_Chr2g0300241	56.538	260	88	6	1	242	1	253	9.71e-85	253
MsaG038061	MtrunA17_Chr2g0329821	56.557	244	96	4	3	236	1	244	5.81e-82	245

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038061	AT5G05610.2	73.950	238	60	1	4	241	5	240	1.34e-116	333
MsaG038061	AT5G05610.1	73.950	238	60	1	4	241	5	240	1.34e-116	333
MsaG038061	AT3G11200.1	77.083	240	54	1	3	241	6	245	3.41e-115	330
MsaG038061	AT3G11200.2	75.481	208	50	1	35	241	25	232	1.83e-97	284
MsaG038061	AT3G42790.1	62.397	242	84	5	6	241	9	249	7.96e-93	273
MsaG038061	AT5G20510.1	59.127	252	88	4	6	242	9	260	7.77e-88	261
MsaG038061	AT2G02470.1	60.484	248	86	4	7	242	9	256	8.39e-88	261
MsaG038061	AT2G02470.2	59.336	241	91	3	7	242	9	247	2.22e-85	254
MsaG038061	AT1G14510.1	58.333	240	93	4	7	239	9	248	1.35e-82	247
MsaG038061	AT5G26210.1	57.430	249	95	4	4	241	6	254	3.03e-77	234
MsaG038061	AT5G20510.2	59.722	216	72	4	42	242	4	219	4.36e-69	212
MsaG038061	AT5G20510.3	61.875	160	56	3	6	160	9	168	1.73e-55	176
MsaG038061	AT2G02470.3	62.179	156	57	1	7	160	9	164	5.76e-55	177

Find 68 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCTGGCTTGTTGTCCTTAAT+TGG	0.215056	7:-70499853	None:intergenic
ATTACAATGCCGACGAGTTT+TGG	0.256361	7:+70500108	MsaT038061.1:CDS
CTTTCTGTGGCGTTCTATCT+TGG	0.287893	7:+70498468	MsaT038061.1:CDS
TTGCTGTGCACAGTGATTCA+TGG	0.330962	7:+70498442	MsaT038061.1:CDS
AAGGATAATTTGTGTCTCTA+TGG	0.357930	7:+70498294	MsaT038061.1:CDS
CTTGTATTGCTTTATGCTCT+CGG	0.362549	7:-70500195	None:intergenic
GACCGACAGGAAACCAATTA+AGG	0.374595	7:+70499840	MsaT038061.1:CDS
TTGCTTCCACTGTCCGCTGC+TGG	0.382118	7:-70499871	None:intergenic
CCGTCATCCACAGGAAACTT+TGG	0.383878	7:-70500026	None:intergenic
AGAGCTGGCTCAGGGAGTTC+CGG	0.393745	7:-70498366	None:intergenic
TCTCAATTGGGTTATGGAAA+TGG	0.397199	7:+70497554	None:intergenic
CACTAACCTTGGTGCTTCCT+CGG	0.397306	7:-70499897	None:intergenic
TTGCTTTATGCTCTCGGCCT+TGG	0.413678	7:-70500189	None:intergenic
CGTCATCCACAGGAAACTTT+GGG	0.432337	7:-70500025	None:intergenic
GAACTCCCTGAGCCAGCTCT+TGG	0.435136	7:+70498369	MsaT038061.1:CDS
TCCTGTGGATGACGGTTATG+AGG	0.442634	7:+70500034	MsaT038061.1:CDS
AGCACAGTGAAACACTTTGC+GGG	0.443628	7:+70500072	MsaT038061.1:CDS
TCCGCCTGATGCTGCATTGA+GGG	0.446153	7:-70500220	None:intergenic
TTTATGCTCTCGGCCTTGGC+AGG	0.451134	7:-70500185	None:intergenic
TCCGGTGGAACTTCCTCTGC+TGG	0.464747	7:-70498348	None:intergenic
AGTGCCCTCAATGCAGCATC+AGG	0.465718	7:+70500216	MsaT038061.1:CDS
ACTAACCTTGGTGCTTCCTC+GGG	0.472237	7:-70499896	None:intergenic
TTGATTCCAAGAGCTGGCTC+AGG	0.473652	7:-70498375	None:intergenic
ATGGTCATAATAATGAAAGC+TGG	0.475692	7:+70498313	MsaT038061.1:CDS
ACGGTATGAACCGTAGAGAT+TGG	0.485613	7:+70498409	MsaT038061.1:CDS
GTCGGTCACAATTTCGAAAA+CGG	0.493814	7:-70499824	None:intergenic
GTCCTTAATTGGTTTCCTGT+CGG	0.494680	7:-70499842	None:intergenic
TTCCGCCTGATGCTGCATTG+AGG	0.510891	7:-70500221	None:intergenic
TGACGGTTATGAGGAGGAGG+AGG	0.514089	7:+70500043	MsaT038061.1:CDS
GCAAAATTGATTCCAAGAGC+TGG	0.521530	7:-70498381	None:intergenic
TCCTCATAACCGTCATCCAC+AGG	0.530396	7:-70500035	None:intergenic
TGGTCATAATAATGAAAGCT+GGG	0.544113	7:+70498314	MsaT038061.1:CDS
GTTGTTCGTGCTCTCACTCA+AGG	0.552840	7:+70497636	MsaT038061.1:CDS
CAAGAGAAAGCCAATCTCTA+CGG	0.553772	7:-70498419	None:intergenic
ATTCGCAGAGATCCAGTGAC+GGG	0.560137	7:+70499988	MsaT038061.1:intron
GCCAGCAGAGGAAGTTCCAC+CGG	0.563034	7:+70498347	MsaT038061.1:CDS
AAGATCTCTTCAACGGTACG+AGG	0.564667	7:-70497585	None:intergenic
GAAACACTTTGCGGGAGCTG+TGG	0.565640	7:+70500080	MsaT038061.1:CDS
TGATTCATGGTTGCTTTCTG+TGG	0.570084	7:+70498455	MsaT038061.1:CDS
ACACTTTGCGGGAGCTGTGG+CGG	0.573976	7:+70500083	MsaT038061.1:CDS
ATCTTTGAAGATCTCTTCAA+CGG	0.581501	7:-70497592	None:intergenic
CCAAAGTTTCCTGTGGATGA+CGG	0.582757	7:+70500026	MsaT038061.1:CDS
GAGCACAGTGAAACACTTTG+CGG	0.584136	7:+70500071	MsaT038061.1:CDS
GGATGACGGTTATGAGGAGG+AGG	0.591224	7:+70500040	MsaT038061.1:CDS
CTCGTCTTAACCGCAATGAA+AGG	0.595014	7:+70498493	MsaT038061.1:CDS
TATGTGAGAGGTGGTACCAT+GGG	0.596316	7:+70500144	MsaT038061.1:CDS
GTCACAATTTCGAAAACGGT+GGG	0.600381	7:-70499820	None:intergenic
TGTGAAGATCACTCCTGCCA+AGG	0.609845	7:+70500172	MsaT038061.1:CDS
AACAAGCCAGCAGCGGACAG+TGG	0.616447	7:+70499865	MsaT038061.1:CDS
GCTGGCTCAGGGAGTTCCGG+TGG	0.616538	7:-70498363	None:intergenic
TGATCTTCACACATTTCCCA+TGG	0.618512	7:-70500160	None:intergenic
TGATTCCAAGAGCTGGCTCA+GGG	0.623716	7:-70498374	None:intergenic
GGAAGTAACTCTGCCAGCAG+AGG	0.636663	7:+70498335	MsaT038061.1:CDS
GCCCTCAATGCAGCATCAGG+CGG	0.644933	7:+70500219	MsaT038061.1:CDS
TTGAGTGAGAGCACGAACAA+CGG	0.655872	7:-70497634	None:intergenic
GGTCACAATTTCGAAAACGG+TGG	0.656142	7:-70499821	None:intergenic
AAGCAACCCAAAGTTTCCTG+TGG	0.656897	7:+70500019	MsaT038061.1:CDS
TTGGTTGTGATATATGTGAG+AGG	0.665767	7:+70500132	MsaT038061.1:CDS
TGTGGATGACGGTTATGAGG+AGG	0.666323	7:+70500037	MsaT038061.1:CDS
ACAACCAATCCAAAACTCGT+CGG	0.669542	7:-70500117	None:intergenic
AGATCTCTTCAACGGTACGA+GGG	0.670323	7:-70497584	None:intergenic
TATTCGCAGAGATCCAGTGA+CGG	0.673421	7:+70499987	MsaT038061.1:intron
TAAGGACAACAAGCCAGCAG+CGG	0.678184	7:+70499858	MsaT038061.1:CDS
ATAGAATGTACCTTTCATTG+CGG	0.683230	7:-70498503	None:intergenic
GACAGTGGAAGCAAATCCCG+AGG	0.687670	7:+70499880	MsaT038061.1:CDS
ATATGTGAGAGGTGGTACCA+TGG	0.697894	7:+70500143	MsaT038061.1:CDS
CAAATCCCGAGGAAGCACCA+AGG	0.723813	7:+70499891	MsaT038061.1:CDS
GTTGTGATATATGTGAGAGG+TGG	0.732743	7:+70500135	MsaT038061.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	70497567	70500253	70497567	ID=MsaG038061
Chr7	mRNA	70497567	70500253	70497567	ID=MsaT038061.1;Parent=MsaG038061
Chr7	exon	70497567	70497657	70497567	ID=MsaT038061.1.exon1;Parent=MsaT038061.1
Chr7	CDS	70497567	70497657	70497567	ID=cds.MsaT038061.1;Parent=MsaT038061.1
Chr7	exon	70497764	70497796	70497764	ID=MsaT038061.1.exon2;Parent=MsaT038061.1
Chr7	CDS	70497764	70497796	70497764	ID=cds.MsaT038061.1;Parent=MsaT038061.1
Chr7	exon	70498292	70498514	70498292	ID=MsaT038061.1.exon3;Parent=MsaT038061.1
Chr7	CDS	70498292	70498514	70498292	ID=cds.MsaT038061.1;Parent=MsaT038061.1
Chr7	exon	70499789	70499912	70499789	ID=MsaT038061.1.exon4;Parent=MsaT038061.1
Chr7	CDS	70499789	70499912	70499789	ID=cds.MsaT038061.1;Parent=MsaT038061.1
Chr7	exon	70499996	70500253	70499996	ID=MsaT038061.1.exon5;Parent=MsaT038061.1
Chr7	CDS	70499996	70500253	70499996	ID=cds.MsaT038061.1;Parent=MsaT038061.1

Gene Sequence

>MsaT038061.1

ATGGAAATGGCTTCTAGCCCTCGTACCGTTGAAGAGATCTTCAAAGATTACAGCGCTCGTAGAATCGCCGTTGTTCGTGCTCTCACTCAAGATGTTGATGAATTTTACGGTCTCTGTGATCCAGATAAGGATAATTTGTGTCTCTATGGTCATAATAATGAAAGCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCGGAACTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTCGAGACGGTATGAACCGTAGAGATTGGCTTTCTCTTGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCGTTCTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTAGTTTGATCAACGAACTTCCCACCGTTTTCGAAATTGTGACCGACAGGAAACCAATTAAGGACAACAAGCCAGCAGCGGACAGTGGAAGCAAATCCCGAGGAAGCACCAAGAGATCCAGTGACGGGCAAGTCAAAAGCAACCCAAAGTTTCCTGTGGATGACGGTTATGAGGAGGAGGAGGAAGACGAGCACAGTGAAACACTTTGCGGGAGCTGTGGCGGTAATTACAATGCCGACGAGTTTTGGATTGGTTGTGATATATGTGAGAGGTGGTACCATGGGAAATGTGTGAAGATCACTCCTGCCAAGGCCGAGAGCATAAAGCAATACAAGTGCCCTCAATGCAGCATCAGGCGGAACAGACCCTAG

Protein sequence

>MsaT038061.1

MEMASSPRTVEEIFKDYSARRIAVVRALTQDVDEFYGLCDPDKDNLCLYGHNNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEIVTDRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFPVDDGYEEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPQCSIRRNRP*