AlfalfaGEDB | MsaG038062

M. sativa ssp. caerulea / MsaG038062

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF14379.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038062	XP_013449146.1	92.437	238	18	0	1	238	1	238	1.56e-160	454

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038062	sp\|Q9SJW0\|PHL7_ARATH	46.951	164	79	4	9	167	11	171	7.97e-44	152

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038062	tr\|A0A072U1W8\|A0A072U1W8_MEDTR	92.437	238	18	0	1	238	1	238	7.44e-161	454

TFs/TRs:

Gene ID	Type	Classification
MsaG038062	TF	GARP-G2-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000403	MsaG038062	0.833201	1.107608e-55	3.517308e-53
MsaG000455	MsaG038062	0.805833	1.867408e-49	2.886577e-47
MsaG000620	MsaG038062	0.811002	1.491550e-50	2.610136e-48
MsaG000932	MsaG038062	0.810336	2.074666e-50	3.572128e-48
MsaG001031	MsaG038062	0.808810	4.396649e-50	7.295823e-48
MsaG001192	MsaG038062	0.807641	7.780523e-50	1.255271e-47
MsaG001233	MsaG038062	0.810100	2.330699e-50	3.989903e-48
MsaG001323	MsaG038062	0.800764	2.070009e-48	2.847495e-46
MsaG001331	MsaG038062	0.828259	1.775943e-54	4.891940e-52
MsaG001601	MsaG038062	0.809331	3.404854e-50	5.721052e-48
MsaG002121	MsaG038062	0.813435	4.417630e-51	8.210541e-49
MsaG002141	MsaG038062	0.810701	1.731471e-50	3.007756e-48
MsaG002681	MsaG038062	0.803723	5.125819e-49	7.544431e-47
MsaG003915	MsaG038062	0.832664	1.503691e-55	4.700182e-53
MsaG004010	MsaG038062	0.821409	7.205343e-53	1.644904e-50
MsaG004588	MsaG038062	0.802037	1.138374e-48	1.611749e-46
MsaG004591	MsaG038062	0.801797	1.274787e-48	1.795084e-46
MsaG005246	MsaG038062	0.824651	1.274634e-53	3.175784e-51
MsaG005530	MsaG038062	0.819992	1.519883e-52	3.342129e-50
MsaG005626	MsaG038062	0.844187	1.651585e-58	7.368447e-56
MsaG006426	MsaG038062	0.801034	1.824010e-48	2.524374e-46
MsaG006481	MsaG038062	0.839492	2.830082e-57	1.087304e-54
MsaG006679	MsaG038062	0.803537	5.600275e-49	8.207260e-47
MsaG006803	MsaG038062	0.802025	1.144858e-48	1.620480e-46
MsaG007117	MsaG038062	0.808045	6.391538e-50	1.041272e-47
MsaG007290	MsaG038062	0.830397	5.407724e-55	1.582922e-52
MsaG008299	MsaG038062	0.841427	8.873782e-58	3.623510e-55
MsaG008877	MsaG038062	0.801376	1.553258e-48	2.166409e-46
MsaG009178	MsaG038062	0.813143	5.118001e-51	9.442753e-49
MsaG009374	MsaG038062	0.815258	1.754297e-51	3.413560e-49
MsaG009532	MsaG038062	0.814866	2.141487e-51	4.125790e-49
MsaG009852	MsaG038062	0.812806	6.061030e-51	1.108905e-48
MsaG009916	MsaG038062	0.808730	4.573192e-50	7.574371e-48
MsaG010075	MsaG038062	0.811472	1.180458e-50	2.089744e-48
MsaG012130	MsaG038062	0.813229	4.899401e-51	9.059222e-49
MsaG012188	MsaG038062	0.800302	2.568181e-48	3.496000e-46
MsaG012302	MsaG038062	0.810448	1.962023e-50	3.387534e-48
MsaG013121	MsaG038062	0.829636	8.271937e-55	2.369248e-52
MsaG013096	MsaG038062	0.813932	3.437230e-51	6.468715e-49
MsaG013103	MsaG038062	0.804149	4.183160e-49	6.218201e-47
MsaG013156	MsaG038062	0.807883	6.914294e-50	1.122092e-47
MsaG013443	MsaG038062	0.800327	2.537868e-48	3.456786e-46
MsaG013450	MsaG038062	0.803883	4.749882e-49	7.016849e-47
MsaG013460	MsaG038062	0.809081	3.850178e-50	6.430794e-48
MsaG013578	MsaG038062	0.806801	1.169549e-49	1.849686e-47
MsaG013970	MsaG038062	0.805636	2.052174e-49	3.157657e-47
MsaG014366	MsaG038062	0.803916	4.674780e-49	6.911328e-47
MsaG014472	MsaG038062	0.803456	5.820037e-49	8.513184e-47
MsaG014670	MsaG038062	0.825675	7.317576e-54	1.875332e-51
MsaG015087	MsaG038062	0.818290	3.693425e-52	7.766687e-50
MsaG015322	MsaG038062	0.808494	5.131870e-50	8.451357e-48
MsaG015720	MsaG038062	0.808184	5.972232e-50	9.762038e-48
MsaG016429	MsaG038062	0.810213	2.204596e-50	3.784314e-48
MsaG016448	MsaG038062	0.838697	4.537195e-57	1.700499e-54
MsaG017114	MsaG038062	0.800362	2.497436e-48	3.404413e-46
MsaG017167	MsaG038062	0.831006	3.840211e-55	1.143884e-52
MsaG017192	MsaG038062	0.805221	2.505152e-49	3.817548e-47
MsaG017399	MsaG038062	0.821244	7.864477e-53	1.787566e-50
MsaG017682	MsaG038062	0.819682	1.787562e-52	3.898364e-50
MsaG017895	MsaG038062	0.802037	1.138431e-48	1.611829e-46
MsaG017973	MsaG038062	0.801391	1.542740e-48	2.152450e-46
MsaG018150	MsaG038062	0.833515	9.255498e-56	2.966351e-53
MsaG018431	MsaG038062	0.804345	3.810449e-49	5.689918e-47
MsaG019134	MsaG038062	0.802992	7.251116e-49	1.049372e-46
MsaG019149	MsaG038062	0.823468	2.408461e-53	5.810866e-51
MsaG019176	MsaG038062	0.813348	4.615569e-51	8.559466e-49
MsaG019278	MsaG038062	0.826190	5.530452e-54	1.437774e-51
MsaG019473	MsaG038062	0.806319	1.477157e-49	2.309802e-47
MsaG019507	MsaG038062	0.804852	2.990983e-49	4.518975e-47
MsaG019716	MsaG038062	0.809924	2.541798e-50	4.332718e-48
MsaG019783	MsaG038062	0.816181	1.095357e-51	2.181783e-49
MsaG020484	MsaG038062	0.801386	1.546277e-48	2.157151e-46
MsaG020650	MsaG038062	0.819996	1.516749e-52	3.335589e-50
MsaG020695	MsaG038062	0.804382	3.744123e-49	5.595568e-47
MsaG020697	MsaG038062	0.807615	7.879107e-50	1.270394e-47
MsaG020862	MsaG038062	0.844611	1.271727e-58	5.753230e-56
MsaG021557	MsaG038062	0.807348	8.971383e-50	1.437327e-47
MsaG021558	MsaG038062	0.823435	2.450698e-53	5.907594e-51
MsaG021781	MsaG038062	0.823208	2.767990e-53	6.631473e-51
MsaG021783	MsaG038062	0.805456	2.238114e-49	3.429228e-47
MsaG021836	MsaG038062	0.842547	4.503220e-58	1.905837e-55
MsaG022048	MsaG038062	0.811648	1.081538e-50	1.922834e-48
MsaG022080	MsaG038062	0.803776	4.997037e-49	7.363862e-47
MsaG022263	MsaG038062	0.824451	1.419919e-53	3.518663e-51
MsaG022706	MsaG038062	0.815738	1.373303e-51	2.704801e-49
MsaG022939	MsaG038062	0.816994	7.212261e-52	1.466897e-49
MsaG022954	MsaG038062	0.816822	7.881071e-52	1.595776e-49
MsaG022981	MsaG038062	0.802466	9.301886e-49	1.329981e-46
MsaG023590	MsaG038062	0.842043	6.113453e-58	2.545874e-55
MsaG023681	MsaG038062	0.825889	6.514332e-54	1.679506e-51
MsaG023688	MsaG038062	0.810515	1.898092e-50	3.282411e-48
MsaG023691	MsaG038062	0.805839	1.861217e-49	2.877470e-47
MsaG023981	MsaG038062	0.804348	3.805977e-49	5.683563e-47
MsaG024414	MsaG038062	0.819151	2.359328e-52	5.074329e-50
MsaG024612	MsaG038062	0.807471	8.452186e-50	1.358119e-47
MsaG024752	MsaG038062	0.817387	5.892079e-52	1.210555e-49
MsaG024909	MsaG038062	0.800616	2.217453e-48	3.040243e-46
MsaG025276	MsaG038062	0.805284	2.430963e-49	3.709776e-47
MsaG025331	MsaG038062	0.809594	2.991389e-50	5.058679e-48
MsaG025462	MsaG038062	0.843809	2.082435e-58	9.176579e-56
MsaG025566	MsaG038062	0.808419	5.323808e-50	8.751460e-48
MsaG025896	MsaG038062	0.821307	7.606724e-53	1.731862e-50
MsaG027194	MsaG038062	0.804477	3.577281e-49	5.357922e-47
MsaG027293	MsaG038062	0.812430	7.318511e-51	1.326518e-48
MsaG027323	MsaG038062	0.834452	5.407848e-56	1.782031e-53
MsaG027581	MsaG038062	0.817657	5.125222e-52	1.060293e-49
MsaG027759	MsaG038062	0.823766	2.052044e-53	4.991613e-51
MsaG028108	MsaG038062	0.809199	3.631756e-50	6.083128e-48
MsaG028417	MsaG038062	0.800229	2.656597e-48	3.610459e-46
MsaG028831	MsaG038062	0.835279	3.356287e-56	1.133610e-53
MsaG029284	MsaG038062	0.815789	1.338295e-51	2.639228e-49
MsaG029894	MsaG038062	0.800625	2.208458e-48	3.028494e-46
MsaG030451	MsaG038062	0.802057	1.127691e-48	1.597367e-46
MsaG030358	MsaG038062	0.808899	4.209221e-50	6.999865e-48
MsaG030981	MsaG038062	0.801748	1.304353e-48	1.834679e-46
MsaG031278	MsaG038062	0.809877	2.601688e-50	4.429752e-48
MsaG032196	MsaG038062	0.801925	1.200260e-48	1.695064e-46
MsaG032177	MsaG038062	0.834462	5.375688e-56	1.771967e-53
MsaG032509	MsaG038062	0.837585	8.746450e-57	3.167197e-54
MsaG033246	MsaG038062	0.807895	6.876729e-50	1.116285e-47
MsaG034340	MsaG038062	0.810696	1.735352e-50	3.014176e-48
MsaG034683	MsaG038062	0.806835	1.150464e-49	1.820907e-47
MsaG035131	MsaG038062	0.810911	1.560072e-50	2.723993e-48
MsaG035144	MsaG038062	0.834773	4.494327e-56	1.495302e-53
MsaG036121	MsaG038062	0.809731	2.796458e-50	4.744631e-48
MsaG036385	MsaG038062	0.818449	3.399469e-52	7.178308e-50
MsaG036503	MsaG038062	0.818446	3.404645e-52	7.188613e-50
MsaG036830	MsaG038062	0.818654	3.056041e-52	6.487604e-50
MsaG037602	MsaG038062	0.875746	5.016522e-68	7.457490e-65
MsaG037603	MsaG038062	0.865455	1.166625e-64	1.122405e-61
MsaG037662	MsaG038062	0.857119	3.945660e-62	2.753482e-59
MsaG038166	MsaG038062	0.816761	8.130599e-52	1.643770e-49
MsaG038053	MsaG038062	0.890275	2.513028e-73	7.513714e-70
MsaG038054	MsaG038062	0.844927	1.046255e-58	4.783689e-56
MsaG038057	MsaG038062	0.887433	3.116959e-72	8.057679e-69
MsaG038058	MsaG038062	0.867712	2.254838e-65	2.377097e-62
MsaG038059	MsaG038062	0.809588	2.999524e-50	5.071806e-48
MsaG038061	MsaG038062	0.819811	1.670874e-52	3.656390e-50
MsaG038062	MsaG038548	0.800455	2.391556e-48	3.266923e-46
MsaG038062	MsaG039140	0.802479	9.241716e-49	1.321799e-46
MsaG038062	MsaG039141	0.826267	5.301769e-54	1.381265e-51
MsaG038062	MsaG039592	0.825454	8.251671e-54	2.101790e-51
MsaG038062	MsaG039931	0.800611	2.223079e-48	3.047592e-46
MsaG038062	MsaG040506	0.811490	1.169989e-50	2.072095e-48
MsaG038062	MsaG040692	0.804673	3.258467e-49	4.902571e-47
MsaG038062	MsaG041010	0.812422	7.348760e-51	1.331707e-48
MsaG038062	MsaG041510	0.801535	1.442107e-48	2.018601e-46
MsaG038062	MsaG042050	0.800688	2.143948e-48	2.944272e-46
MsaG038062	MsaG042381	0.820177	1.378954e-52	3.047240e-50
MsaG038062	MsaG042532	0.834851	4.296439e-56	1.432791e-53
MsaG038062	MsaG042799	0.802540	8.982390e-49	1.286497e-46
MsaG038062	MsaG043499	0.808299	5.645117e-50	9.252983e-48
MsaG038062	MsaG043634	0.817023	7.106192e-52	1.446409e-49
MsaG038062	MsaG043710	0.806014	1.711365e-49	2.656580e-47
MsaG038062	MsaG044532	0.800447	2.400177e-48	3.278141e-46
MsaG038062	MsaG045012	0.824664	1.265716e-53	3.154744e-51
MsaG038062	MsaG045958	0.813755	3.760008e-51	7.044538e-49
MsaG038062	MsaG046355	0.825598	7.631372e-54	1.951505e-51
MsaG038062	MsaG046441	0.811944	9.329722e-51	1.670904e-48
MsaG038062	MsaG046753	0.811036	1.466381e-50	2.568277e-48
MsaG038062	MsaG047151	0.803194	6.588443e-49	9.579413e-47
MsaG038062	MsaG003317	0.822134	4.907383e-53	1.142145e-50
MsaG038062	MsaG007532	0.803429	5.893493e-49	8.615401e-47
MsaG038062	MsaG009150	0.804321	3.854768e-49	5.752863e-47
MsaG038062	MsaG013196	0.802126	1.091927e-48	1.549104e-46
MsaG038062	MsaG011916	0.804951	2.851515e-49	4.318187e-47
MsaG038062	MsaG019843	0.841442	8.792920e-58	3.592146e-55
MsaG038062	MsaG024920	0.813508	4.257447e-51	7.927344e-49
MsaG038062	MsaG028769	0.821580	6.581915e-53	1.509388e-50
MsaG038062	MsaG025090	0.812205	8.191286e-51	1.476364e-48
MsaG038062	MsaG034563	0.820640	1.081220e-52	2.418567e-50
MsaG038062	MsaG032678	0.800832	2.005147e-48	2.762431e-46
MsaG038062	MsaG032827	0.800286	2.587739e-48	3.521334e-46
MsaG038062	MsaG032852	0.807490	8.375512e-50	1.346383e-47
MsaG038062	MsaG031505	0.802315	9.989266e-49	1.423367e-46
MsaG038062	MsaG031636	0.822906	3.251995e-53	7.727764e-51
MsaG038062	MsaG037049	0.852929	6.417541e-61	3.851699e-58

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038062	MtrunA17_Chr7g0242521	92.017	238	18	1	1	238	1	237	9.33e-162	447
MsaG038062	MtrunA17_Chr7g0254981	55.303	132	53	2	13	141	50	178	1.38e-43	148
MsaG038062	MtrunA17_Chr2g0291021	48.408	157	73	5	13	166	49	200	4.17e-42	145
MsaG038062	MtrunA17_Chr1g0175091	49.275	138	64	4	2	138	246	378	2.06e-35	130
MsaG038062	MtrunA17_Chr7g0261911	49.306	144	58	4	1	138	250	384	1.78e-34	128
MsaG038062	MtrunA17_Chr7g0258551	46.512	129	65	2	13	141	212	336	1.01e-33	125
MsaG038062	MtrunA17_Chr1g0190301	43.871	155	79	5	13	166	175	322	2.06e-32	121
MsaG038062	MtrunA17_Chr2g0310011	45.038	131	66	2	13	140	35	162	3.77e-29	112
MsaG038062	MtrunA17_Chr2g0321461	41.611	149	64	3	13	141	45	190	4.63e-29	112
MsaG038062	MtrunA17_Chr6g0461641	41.611	149	68	3	9	141	38	183	8.40e-29	112
MsaG038062	MtrunA17_Chr5g0409731	41.958	143	64	3	13	141	25	162	2.44e-28	108
MsaG038062	MtrunA17_Chr7g0274471	42.636	129	71	1	13	141	218	343	3.42e-28	110
MsaG038062	MtrunA17_Chr8g0356501	42.424	132	70	2	13	141	37	165	2.84e-27	107
MsaG038062	MtrunA17_Chr4g0042451	39.310	145	72	4	9	141	13	153	4.72e-26	103
MsaG038062	MtrunA17_Chr5g0417521	37.415	147	73	4	9	141	11	152	2.31e-24	99.4
MsaG038062	MtrunA17_Chr2g0290991	33.333	180	95	3	9	176	35	201	1.03e-23	97.1
MsaG038062	MtrunA17_Chr1g0175071	42.754	138	73	3	3	138	165	298	6.98e-23	94.7
MsaG038062	MtrunA17_Chr1g0197171	35.897	156	78	3	13	159	44	186	5.15e-21	89.4
MsaG038062	MtrunA17_Chr7g0258531	35.404	161	88	5	1	153	201	353	3.55e-17	79.3
MsaG038062	MtrunA17_Chr1g0175081	45.238	84	42	2	9	92	18	97	1.85e-16	72.4
MsaG038062	MtrunA17_Chr2g0320231	59.322	59	21	1	15	73	99	154	4.12e-13	67.8
MsaG038062	MtrunA17_Chr3g0095611	49.296	71	30	2	2	69	5	72	4.30e-13	66.2
MsaG038062	MtrunA17_Chr8g0379121	57.627	59	22	1	15	73	113	168	6.33e-13	67.4
MsaG038062	MtrunA17_Chr7g0243081	55.000	60	24	1	15	74	73	129	8.15e-13	67.0
MsaG038062	MtrunA17_Chr6g0479431	53.448	58	24	1	15	72	204	258	2.15e-12	65.9
MsaG038062	MtrunA17_Chr2g0288601	61.538	52	17	1	15	66	73	121	2.40e-12	62.4
MsaG038062	MtrunA17_Chr8g0366281	52.542	59	25	1	15	73	175	230	4.44e-12	64.7
MsaG038062	MtrunA17_Chr1g0154261	43.038	79	42	1	15	93	128	203	6.82e-12	63.9
MsaG038062	MtrunA17_Chr3g0109981	39.773	88	50	1	15	102	276	360	7.91e-12	64.3
MsaG038062	MtrunA17_Chr5g0410741	53.448	58	24	1	15	72	221	275	2.05e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038062	AT2G01060.1	46.951	164	79	4	9	167	11	171	8.10e-45	152
MsaG038062	AT5G06800.1	48.551	138	67	2	9	146	188	321	3.17e-37	134
MsaG038062	AT5G06800.2	47.183	142	68	2	9	146	188	326	9.21e-37	133
MsaG038062	AT1G79430.2	43.506	154	68	4	13	161	34	173	1.06e-32	122
MsaG038062	AT4G28610.1	47.794	136	57	3	9	138	221	348	1.58e-32	122
MsaG038062	AT5G29000.1	43.571	140	73	3	2	138	177	313	1.49e-31	119
MsaG038062	AT5G29000.3	43.571	140	73	3	2	138	177	313	1.49e-31	119
MsaG038062	AT5G29000.2	43.571	140	73	3	2	138	220	356	2.01e-31	119
MsaG038062	AT1G69580.1	43.709	151	63	4	9	141	30	176	6.87e-31	117
MsaG038062	AT1G69580.2	43.421	152	63	4	9	141	30	177	1.02e-30	116
MsaG038062	AT3G24120.1	33.036	224	120	5	13	219	41	251	3.92e-30	114
MsaG038062	AT3G04450.4	38.596	171	92	5	9	170	194	360	1.46e-29	114
MsaG038062	AT3G04450.2	38.596	171	92	5	9	170	194	360	1.46e-29	114
MsaG038062	AT3G04450.1	38.596	171	92	5	9	170	234	400	1.94e-29	114
MsaG038062	AT4G13640.1	37.288	177	83	4	13	175	37	199	1.32e-28	109
MsaG038062	AT3G13040.3	42.857	147	75	3	1	141	228	371	2.93e-28	111
MsaG038062	AT3G13040.1	42.857	147	75	3	1	141	228	371	2.93e-28	111
MsaG038062	AT3G13040.2	42.857	147	75	3	1	141	228	371	2.93e-28	111
MsaG038062	AT3G24120.2	32.599	227	120	6	13	219	41	254	4.77e-28	108
MsaG038062	AT3G04030.3	42.282	149	66	4	9	141	41	185	8.26e-28	109
MsaG038062	AT5G18240.1	44.138	145	61	5	13	141	45	185	9.19e-28	109
MsaG038062	AT5G18240.4	44.138	145	61	5	13	141	45	185	9.19e-28	109
MsaG038062	AT2G20400.2	43.307	127	68	2	13	138	231	354	1.38e-26	106
MsaG038062	AT4G13640.2	36.667	180	83	5	13	175	37	202	1.51e-26	104
MsaG038062	AT2G01060.2	43.443	122	64	3	51	167	1	122	8.20e-26	101
MsaG038062	AT2G20400.1	41.270	126	71	1	13	138	231	353	2.11e-25	103
MsaG038062	AT3G04030.2	41.611	149	66	5	9	141	41	184	3.42e-25	102
MsaG038062	AT5G45580.1	38.194	144	68	3	13	138	7	147	7.35e-25	99.4
MsaG038062	AT5G45580.2	38.194	144	68	3	13	138	23	163	1.18e-24	99.4
MsaG038062	AT5G18240.5	42.759	145	61	6	13	141	45	183	1.46e-24	100
MsaG038062	AT3G12730.1	37.778	135	73	3	13	139	23	154	1.30e-23	95.5
MsaG038062	AT3G04030.1	40.268	149	63	5	9	141	41	179	2.73e-23	97.1
MsaG038062	AT5G18240.2	42.069	145	58	6	13	141	45	179	3.63e-23	97.1
MsaG038062	AT5G18240.3	42.069	145	58	6	13	141	45	179	3.63e-23	97.1
MsaG038062	AT5G06800.3	62.319	69	23	1	9	77	188	253	1.59e-22	93.6
MsaG038062	AT5G29000.4	47.872	94	46	1	2	95	220	310	4.70e-20	87.4
MsaG038062	AT3G04450.3	54.412	68	28	1	9	76	234	298	1.36e-18	83.2
MsaG038062	AT1G79430.1	38.655	119	57	3	48	161	1	108	2.43e-18	82.4
MsaG038062	AT2G42660.1	61.905	63	21	1	15	77	52	111	9.66e-16	74.7
MsaG038062	AT2G06020.1	51.667	60	26	1	13	72	86	142	1.24e-15	75.1
MsaG038062	AT2G40260.1	60.345	58	20	1	15	72	84	138	2.79e-14	71.6
MsaG038062	AT3G04030.5	38.182	110	51	3	48	141	1	109	1.32e-13	69.3
MsaG038062	AT4G04605.1	51.351	74	32	2	15	88	16	85	2.12e-13	67.4
MsaG038062	AT5G42630.2	50.000	74	33	2	15	87	107	177	2.57e-13	67.4
MsaG038062	AT5G42630.1	48.148	81	38	2	15	94	107	184	3.44e-13	67.8
MsaG038062	AT4G17695.1	38.835	103	47	2	15	104	166	265	6.33e-12	64.7
MsaG038062	AT5G16560.1	46.575	73	34	2	15	85	221	290	1.33e-11	63.9
MsaG038062	AT2G38300.1	55.932	59	23	1	15	73	56	111	1.83e-11	63.2
MsaG038062	AT1G32240.2	53.448	58	24	1	15	72	215	269	2.34e-11	63.2
MsaG038062	AT2G02060.2	60.000	55	19	1	15	69	31	82	2.47e-11	62.4
MsaG038062	AT2G02060.1	60.000	55	19	1	15	69	31	82	2.47e-11	62.4
MsaG038062	AT1G14600.1	55.932	59	23	1	15	73	25	80	2.49e-11	62.4
MsaG038062	AT1G32240.1	53.448	58	24	1	15	72	215	269	2.54e-11	63.2
MsaG038062	AT4G37180.1	51.724	58	25	1	13	70	210	264	8.18e-11	61.6
MsaG038062	AT4G37180.2	51.724	58	25	1	13	70	217	271	8.58e-11	61.6

Find 59 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTACTTGTGGTGGATTC+TGG	0.193661	7:-70535879	None:intergenic
ACCAAACCTGGAACCTTTCT+TGG	0.232009	7:+70536846	MsaT038062.1:CDS
TACGATATAGAACAGAAATT+TGG	0.266828	7:-70536023	None:intergenic
GGTGCCAAGTTTCTTATTAT+AGG	0.282243	7:+70536904	MsaT038062.1:CDS
GGTGGATTCTGGAATCAATT+TGG	0.287077	7:-70535868	None:intergenic
GCACCTCTGCCTGCATTTGA+AGG	0.327265	7:-70536140	None:intergenic
TGGAGGCTGTAAATAGGCTT+GGG	0.332347	7:+70533851	MsaT038062.1:CDS
TCTTTGTGGAGGCTGTAAAT+AGG	0.333114	7:+70533845	MsaT038062.1:CDS
CGCTGTTCGACGTTCTTCAT+CGG	0.369962	7:-70536744	None:intergenic
TCCAAGAAAGGTTCCAGGTT+TGG	0.371544	7:-70536847	None:intergenic
TTGGATATGTTCAGAAATAC+AGG	0.386624	7:+70535841	MsaT038062.1:intron
ACACGTCAAAAGCCACTTGC+AGG	0.391889	7:+70534997	MsaT038062.1:CDS
GTGGAGGCTGTAAATAGGCT+TGG	0.397815	7:+70533850	MsaT038062.1:CDS
AAGAAGAGCTTGCAAGCCTT+TGG	0.398313	7:+70536661	MsaT038062.1:CDS
CTGACTCCAAGAAAGGTTCC+AGG	0.408019	7:-70536852	None:intergenic
GGAAAGTACCTAGACAGAAT+TGG	0.410201	7:+70536611	MsaT038062.1:CDS
AGCAACCTACCTTTCACCTT+TGG	0.415291	7:+70536883	MsaT038062.1:CDS
GAACCTTTCTTGGAGTCAGC+TGG	0.440714	7:+70536856	MsaT038062.1:CDS
ATTCCTTTCAGTATACCTCT+TGG	0.449845	7:-70534941	None:intergenic
CAGCCTCCACAAAGAGATCA+TGG	0.480797	7:-70533837	None:intergenic
GTTATTGAACTCTGAGGTGG+TGG	0.485508	7:-70536825	None:intergenic
CAGCCAGCTGACTCCAAGAA+AGG	0.496169	7:-70536859	None:intergenic
ACAACTCCATGATCTCTTTG+TGG	0.503279	7:+70533831	MsaT038062.1:CDS
ACTGAAAGGAATGAAGGCTA+TGG	0.503485	7:+70534952	MsaT038062.1:CDS
GAACAGTGCTCTTCAGCTAA+AGG	0.503631	7:+70536113	MsaT038062.1:intron
TACTTTGTCCAATTCTGTCT+AGG	0.510514	7:-70536619	None:intergenic
CACACAAAGAACGCTTAAGA+TGG	0.520735	7:+70533803	MsaT038062.1:CDS
CAGAGTTCAATAACCAAACC+TGG	0.524988	7:+70536834	MsaT038062.1:CDS
ATGGGTTCCACTCGCTCAGA+TGG	0.537642	7:+70533772	MsaT038062.1:CDS
AAAGGAACTCCTTCAAATGC+AGG	0.540215	7:+70536131	MsaT038062.1:CDS
AGGTATACTGAAAGGAATGA+AGG	0.543020	7:+70534946	MsaT038062.1:CDS
AATAAGAAACTTGGCACCAA+AGG	0.545841	7:-70536899	None:intergenic
TCGAACAGCGAAAATGCAAA+AGG	0.552298	7:+70536757	MsaT038062.1:CDS
AAAACCTATAATAAGAAACT+TGG	0.552729	7:-70536908	None:intergenic
AGAGCTTGCAAGCCTTTGGT+TGG	0.555317	7:+70536665	MsaT038062.1:CDS
CTGAAAGGAATGAAGGCTAT+GGG	0.555733	7:+70534953	MsaT038062.1:CDS
GAGGCTGTAAATAGGCTTGG+GGG	0.562654	7:+70533853	MsaT038062.1:CDS
TTCAGATTCCTCAGAAAGAG+AGG	0.566319	7:-70536705	None:intergenic
GATCCTAGTTCAAAACATGT+AGG	0.571888	7:-70536800	None:intergenic
GGAGGCTGTAAATAGGCTTG+GGG	0.579180	7:+70533852	MsaT038062.1:CDS
ACCTCTGCCCTCTCTTTCTG+AGG	0.584449	7:+70536697	MsaT038062.1:CDS
GGTGTTGCTTTACCAACCAA+AGG	0.587136	7:-70536677	None:intergenic
TCTTAAGCGTTCTTTGTGTG+TGG	0.591577	7:-70533800	None:intergenic
AACTTGGCACCAAAGGTGAA+AGG	0.593004	7:-70536892	None:intergenic
ACTCCTTCAAATGCAGGCAG+AGG	0.602704	7:+70536137	MsaT038062.1:CDS
TTGGTTATTGAACTCTGAGG+TGG	0.604572	7:-70536828	None:intergenic
TCCTCAGAAAGAGAGGGCAG+AGG	0.605704	7:-70536698	None:intergenic
GATGATCTATGAAGGAGGAA+AGG	0.610887	7:+70535971	MsaT038062.1:intron
GGCAGAGCCATCTGAGCGAG+TGG	0.612768	7:-70533779	None:intergenic
ACGCATGAGTGATAAAGTTG+AGG	0.616870	7:+70536167	MsaT038062.1:CDS
TGGCACCAAAGGTGAAAGGT+AGG	0.623055	7:-70536888	None:intergenic
ACACCAAGAGGTATACTGAA+AGG	0.630195	7:+70534938	MsaT038062.1:CDS
GGTTTGGTTATTGAACTCTG+AGG	0.639747	7:-70536831	None:intergenic
ACTCCATGATCTCTTTGTGG+AGG	0.654213	7:+70533834	MsaT038062.1:CDS
TTGTCAGGGGCAACACCAAG+AGG	0.658933	7:+70534926	MsaT038062.1:intron
TCAGATTCCTCAGAAAGAGA+GGG	0.661556	7:-70536704	None:intergenic
ATGGGTGAAGAACCTGCAAG+TGG	0.669007	7:-70535009	None:intergenic
AGGCTGTAAATAGGCTTGGG+GGG	0.689265	7:+70533854	MsaT038062.1:CDS
AAGGTGAAAATTGAAGCACA+AGG	0.725184	7:+70536590	MsaT038062.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	70533772	70536925	70533772	ID=MsaG038062
Chr7	mRNA	70533772	70536925	70533772	ID=MsaT038062.1;Parent=MsaG038062
Chr7	exon	70533772	70533883	70533772	ID=MsaT038062.1.exon1;Parent=MsaT038062.1
Chr7	CDS	70533772	70533883	70533772	ID=cds.MsaT038062.1;Parent=MsaT038062.1
Chr7	exon	70534933	70535018	70534933	ID=MsaT038062.1.exon2;Parent=MsaT038062.1
Chr7	CDS	70534933	70535018	70534933	ID=cds.MsaT038062.1;Parent=MsaT038062.1
Chr7	exon	70535855	70535894	70535855	ID=MsaT038062.1.exon3;Parent=MsaT038062.1
Chr7	CDS	70535855	70535894	70535855	ID=cds.MsaT038062.1;Parent=MsaT038062.1
Chr7	exon	70535985	70536042	70535985	ID=MsaT038062.1.exon4;Parent=MsaT038062.1
Chr7	CDS	70535985	70536042	70535985	ID=cds.MsaT038062.1;Parent=MsaT038062.1
Chr7	exon	70536119	70536188	70536119	ID=MsaT038062.1.exon5;Parent=MsaT038062.1
Chr7	CDS	70536119	70536188	70536119	ID=cds.MsaT038062.1;Parent=MsaT038062.1
Chr7	exon	70536575	70536925	70536575	ID=MsaT038062.1.exon6;Parent=MsaT038062.1
Chr7	CDS	70536575	70536925	70536575	ID=cds.MsaT038062.1;Parent=MsaT038062.1

Gene Sequence

>MsaT038062.1

ATGGGTTCCACTCGCTCAGATGGCTCTGCCACACACAAAGAACGCTTAAGATGGACACAACAACTCCATGATCTCTTTGTGGAGGCTGTAAATAGGCTTGGGGGGCCAGATAGGGCAACACCAAGAGGTATACTGAAAGGAATGAAGGCTATGGGAGTTTCAGAATTGAAAATATTACACGTCAAAAGCCACTTGCAGAAATACAGGATTTCCAAATTGATTCCAGAATCCACCACAAGAGGAAAGGTTGAGAAGAGAAGCATATCAGATATACTGCCAAATTTCTGTTCTATATCTGCTCTTCAGCTAAAGGAACTCCTTCAAATGCAGGCAGAGGTGCAAAAACGCATGAGTGATAAAGTTGAGGTTCAAAAAAGCTTGAAGGTGAAAATTGAAGCACAAGGAAAGTACCTAGACAGAATTGGACAAAGTAATCAAATCAAAACAATTACAAGAAGAGCTTGCAAGCCTTTGGTTGGTAAAGCAACACCTCTGCCCTCTCTTTCTGAGGAATCTGAATCCTTTAAAACACAATCCGATGAAGAACGTCGAACAGCGAAAATGCAAAAGGTCACAGATGAGAATGTTTTTCCTACATGTTTTGAACTAGGATCATCCACCACCTCAGAGTTCAATAACCAAACCTGGAACCTTTCTTGGAGTCAGCTGGCTGAAGCAACCTACCTTTCACCTTTGGTGCCAAGTTTCTTATTATAG

Protein sequence

>MsaT038062.1

MGSTRSDGSATHKERLRWTQQLHDLFVEAVNRLGGPDRATPRGILKGMKAMGVSELKILHVKSHLQKYRISKLIPESTTRGKVEKRSISDILPNFCSISALQLKELLQMQAEVQKRMSDKVEVQKSLKVKIEAQGKYLDRIGQSNQIKTITRRACKPLVGKATPLPSLSEESESFKTQSDEERRTAKMQKVTDENVFPTCFELGSSTTSEFNNQTWNLSWSQLAEATYLSPLVPSFLL*