AlfalfaGEDB | MsaG038126

M. sativa ssp. caerulea / MsaG038126

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038126	XP_003623338.1	92.922	551	35	2	1	551	39	585	0.0	1022

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038126	sp\|Q2PEG7\|NSP2_LOTJA	24.938	405	242	17	180	549	113	490	2.89e-16	85.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038126	tr\|G7KSD5\|G7KSD5_MEDTR	92.922	551	35	2	1	551	39	585	0.0	1022

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TFs/TRs:

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Gene ID	Type	Classification
MsaG038126	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038126	MtrunA17_Chr7g0243151	92.922	551	35	2	1	551	39	585	0.0	1022
MsaG038126	MtrunA17_Chr3g0114841	25.310	403	250	15	180	549	115	499	1.92e-16	82.4
MsaG038126	MtrunA17_Chr5g0424131	25.750	400	250	15	180	549	116	498	7.64e-16	80.5
MsaG038126	MtrunA17_Chr7g0224271	25.404	433	242	21	164	550	276	673	5.15e-13	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 92 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAGAACGAAAAGGG+CGG	0.683472	7:+71727159	MsaT038126.1:CDS
AAAATTCTCCCTGTGATGCA+TGG	0.552151	7:+71726506	MsaT038126.1:CDS
AAATGAGAATCAACTTGTTT+TGG	0.251878	7:+71727665	MsaT038126.1:CDS
AACTCCCTTCACTTTCTTCT+TGG	0.266056	7:-71726378	None:intergenic
AAGAGAGTCACCAATTGGAG+TGG	0.663623	7:-71726716	None:intergenic
AATCATGGAGAATACCTCAA+AGG	0.661739	7:+71726775	MsaT038126.1:CDS
ACATGCTTATGAATGTTTGA+AGG	0.491685	7:+71727254	MsaT038126.1:CDS
ACCAATTTGGGGACTCAAAA+TGG	0.187480	7:-71726332	None:intergenic
AGCAAGGGAATTATTACTTT+TGG	0.295898	7:+71727306	MsaT038126.1:CDS
AGGGAATTTGGTGCATTACA+AGG	0.487309	7:+71727386	MsaT038126.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	71726079	71727734	71726079	ID=MsaG038126
Chr7	mRNA	71726079	71727734	71726079	ID=MsaT038126.1;Parent=MsaG038126
Chr7	exon	71726079	71727734	71726079	ID=MsaT038126.1.exon1;Parent=MsaT038126.1
Chr7	CDS	71726079	71727734	71726079	ID=cds.MsaT038126.1;Parent=MsaT038126.1

Gene Sequence

>MsaT038126.1

ATGGTTGACCATGTTGATGACTATGATCCATATGGCATCATCATGGATGACCATGTTGATGATGACTATGTTCCATATGGCATCATCATGGATGATCATGTTGAATATGATTATGAATTCAATACTCTATTAAGCACTTCAGAGAATAGTACTCTCTCTGAAATCTCCATATTCACCCATAATCATATCCAATTTCCAATTGATGAAGAAACCTTAGAACTTCCATCTCTAATGGAATTAGATTCTTTTGATTCCATTTTGAGTCCCCAAATTGGTAATATTCATGAACAAGAATATTACCAAGAAGAAAGTGAAGGGAGTTTCCCTTCACAAAATTTTCCACATAACCTCGAAGGGTATAGTTCAAATAACCTCGGAGACGGTTGTAAAATGGCCGCCAGTGCCACTTATGATCATTTCCCTTTACAAAATTCTCCCTGTGATGCATGGAGTCCAACACTTTCAATGATATCAGATTTTTCATCAATTCAACAATCACTTACTTTGCCACAAGAAAATATGGAAATTGAAAACCAAGTGAGTCTTCCACACTTGATGGAAGCACATGGTGAAGCCTTGGAGAAAGGACAAAAAGCACTAGCAGAAGTTAATTTGAAGTGTATAAGCCAAAAAGTTACCACTCCAATTGGTGACTCTCTTGAGACACTTGCATTTTATTTGGCTCAAGAAGTGACAAATCATGGAGAATACCTCAAAGGCGAGGCATACAAGAATTTTCAGGCTGCTTTTAAGGTATTTTATCAAGGAAATTTGGTTGGGAAAATTGCTCATTTTTCAGCTATTTCATCAATTCTTGAAGCTGCTATGTTAGAAGATTGTGATGAAATTCACATAATTGATTATTGTTTTGGAAATGGTGTTCAATGGCCTTTTCTATTGGAGACTGTTTCAAAAATGAATAAAAAATTGAAATTGACATCAATTAAATGGAGTGATGAAAATTCTGCATCTGTTTGGAATTTCGAGGATACCAAAAGGGAACTTTATGAGTATGCTAAATCATGTGGTTTGAAATTGAAGGTAGAGGAAAAGGAATTGGAAGAATTGATTAGTGAGATCAAAATAAAGAACGAAAAGGGCGGAAAGAAAGTGTTTTTGGCTTTCAATTTGATGACCGGTCTTCCTCATATGGGAATGGTTAGAAGTAGAAGAAAACATGCTTATGAATGTTTGAAGGTAGCCGAGGATTTGATCAAGAACTATGGTAGCAAGGGAATTATTACTTTTGGTGATGGTGATGCATTTGAGAAACTGAAAAACAGTTTGAATTTCATGTCATTTTTTGAAGGGAATTTGGTGCATTACAAGGCTTTGTTGGAATCAATTCAATCACAATTTTCAGAAAATTTCTCAGAAGCAAGAATTGCATGTGAAATATTGTTTGTGGCACCTTGTATATCTTCTCTTGATTGGTTGCAAACATGGGAAGAGATGAAAAGTGATGGCTATCATCATAAAGGTGAGATTAGCTTAGAATGTGGAAGATTGAGCAAAAATGTTTTGATGGAAGTCAGAGAAATGTTGAGAGGAAGTGATAGTTCATATCAAGCAAGAATTGAAGGAGAAAATGAGAATCAACTTGTTTTGGAATGGAAAGGAAGTCAACTGTTAAGATTTTCTATTTGGAAAAATTGA

Protein sequence

>MsaT038126.1

MVDHVDDYDPYGIIMDDHVDDDYVPYGIIMDDHVEYDYEFNTLLSTSENSTLSEISIFTHNHIQFPIDEETLELPSLMELDSFDSILSPQIGNIHEQEYYQEESEGSFPSQNFPHNLEGYSSNNLGDGCKMAASATYDHFPLQNSPCDAWSPTLSMISDFSSIQQSLTLPQENMEIENQVSLPHLMEAHGEALEKGQKALAEVNLKCISQKVTTPIGDSLETLAFYLAQEVTNHGEYLKGEAYKNFQAAFKVFYQGNLVGKIAHFSAISSILEAAMLEDCDEIHIIDYCFGNGVQWPFLLETVSKMNKKLKLTSIKWSDENSASVWNFEDTKRELYEYAKSCGLKLKVEEKELEELISEIKIKNEKGGKKVFLAFNLMTGLPHMGMVRSRRKHAYECLKVAEDLIKNYGSKGIITFGDGDAFEKLKNSLNFMSFFEGNLVHYKALLESIQSQFSENFSEARIACEILFVAPCISSLDWLQTWEEMKSDGYHHKGEISLECGRLSKNVLMEVREMLRGSDSSYQARIEGENENQLVLEWKGSQLLRFSIWKN*