AlfalfaGEDB | MsaG038136

M. sativa ssp. caerulea / MsaG038136

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038136	XP_024626741.1	86.219	283	27	2	1	283	1	271	8.34e-174	491

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038136	sp\|Q39266\|ZFP7_ARATH	34.559	136	73	4	88	216	59	185	1.65e-11	65.5

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038136	tr\|A0A2Z6NVK6\|A0A2Z6NVK6_TRISU	53.312	317	103	7	1	275	1	314	7.39e-93	287

TFs/TRs:

Gene ID	Type	Classification
MsaG038136	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000795	MsaG038136	0.801562	1.423729e-48	1.994073e-46
MsaG000830	MsaG038136	0.801220	1.671543e-48	2.323070e-46
MsaG002201	MsaG038136	0.820387	1.235134e-52	2.744533e-50
MsaG002560	MsaG038136	0.803241	6.444493e-49	9.380037e-47
MsaG002563	MsaG038136	0.812399	7.430704e-51	1.345841e-48
MsaG003067	MsaG038136	0.812558	6.863752e-51	1.248069e-48
MsaG003188	MsaG038136	0.836569	1.585124e-56	5.565556e-54
MsaG003974	MsaG038136	0.812060	8.804393e-51	1.581207e-48
MsaG004094	MsaG038136	0.822412	4.231863e-53	9.923229e-51
MsaG004344	MsaG038136	0.812474	7.158085e-51	1.298877e-48
MsaG004859	MsaG038136	0.809217	3.600508e-50	6.033335e-48
MsaG005201	MsaG038136	0.824090	1.724659e-53	4.231991e-51
MsaG005533	MsaG038136	0.818857	2.749432e-52	5.867761e-50
MsaG006124	MsaG038136	0.815324	1.696474e-51	3.306425e-49
MsaG006862	MsaG038136	0.804875	2.956938e-49	4.470022e-47
MsaG007798	MsaG038136	0.805507	2.184401e-49	3.350814e-47
MsaG009073	MsaG038136	0.843490	2.532879e-58	1.104854e-55
MsaG010098	MsaG038136	0.849107	7.586884e-60	3.988842e-57
MsaG010678	MsaG038136	0.808295	5.656495e-50	9.270724e-48
MsaG012331	MsaG038136	0.811716	1.045572e-50	1.862019e-48
MsaG012348	MsaG038136	0.829690	8.028195e-55	2.302878e-52
MsaG042546	MsaG038136	0.829503	8.910070e-55	2.542200e-52
MsaG042767	MsaG038136	0.814013	3.300202e-51	6.223117e-49
MsaG043881	MsaG038136	0.809516	3.109112e-50	5.247927e-48
MsaG044374	MsaG038136	0.800995	1.857694e-48	2.568711e-46
MsaG044390	MsaG038136	0.813102	5.224288e-51	9.629063e-49
MsaG046264	MsaG038136	0.835286	3.342080e-56	1.129041e-53
MsaG046562	MsaG038136	0.829592	8.478571e-55	2.425344e-52
MsaG007338	MsaG038136	0.835573	2.829532e-56	9.641807e-54
MsaG011837	MsaG038136	0.825818	6.769865e-54	1.741957e-51
MsaG012734	MsaG038136	0.814233	2.952621e-51	5.598680e-49
MsaG011535	MsaG038136	0.803487	5.734349e-49	8.393941e-47
MsaG024279	MsaG038136	0.806918	1.105134e-49	1.752593e-47
MsaG020012	MsaG038136	0.808398	5.377614e-50	8.835381e-48
MsaG026444	MsaG038136	0.830398	5.402835e-55	1.581556e-52
MsaG026746	MsaG038136	0.862720	8.227226e-64	7.101438e-61
MsaG026809	MsaG038136	0.821613	6.468439e-53	1.484706e-50
MsaG032967	MsaG038136	0.834552	5.106181e-56	1.687605e-53
MsaG031512	MsaG038136	0.809014	3.978065e-50	6.633806e-48
MsaG031473	MsaG038136	0.843134	3.147823e-58	1.357470e-55
MsaG031225	MsaG038136	0.809161	3.701728e-50	6.194669e-48
MsaG033085	MsaG038136	0.809670	2.881346e-50	4.881420e-48
MsaG031718	MsaG038136	0.812618	6.659618e-51	1.212722e-48
MsaG030727	MsaG038136	0.804134	4.214021e-49	6.261821e-47
MsaG037361	MsaG038136	0.855501	1.170762e-61	7.702292e-59
MsaG037217	MsaG038136	0.821392	7.272723e-53	1.659529e-50
MsaG013413	MsaG038136	0.807212	9.585587e-50	1.530716e-47
MsaG014897	MsaG038136	0.803009	7.193365e-49	1.041418e-46
MsaG016352	MsaG038136	0.811440	1.199336e-50	2.121471e-48
MsaG017124	MsaG038136	0.808584	4.910042e-50	8.103570e-48
MsaG017270	MsaG038136	0.803279	6.329651e-49	9.220992e-47
MsaG017355	MsaG038136	0.848682	9.941166e-60	5.151169e-57
MsaG018809	MsaG038136	0.811379	1.236394e-50	2.183765e-48
MsaG019191	MsaG038136	0.824887	1.122120e-53	2.813967e-51
MsaG019352	MsaG038136	0.847507	2.090803e-59	1.041420e-56
MsaG020653	MsaG038136	0.815174	1.831071e-51	3.555205e-49
MsaG021311	MsaG038136	0.818102	4.071389e-52	8.520253e-50
MsaG021314	MsaG038136	0.806317	1.478513e-49	2.311804e-47
MsaG022780	MsaG038136	0.802060	1.126531e-48	1.595816e-46
MsaG027172	MsaG038136	0.818036	4.212350e-52	8.800344e-50
MsaG027177	MsaG038136	0.811370	1.241908e-50	2.193010e-48
MsaG027359	MsaG038136	0.831556	2.816873e-55	8.525984e-53
MsaG027672	MsaG038136	0.833028	1.222355e-55	3.861820e-53
MsaG028091	MsaG038136	0.814052	3.235299e-51	6.106734e-49
MsaG028461	MsaG038136	0.829627	8.314571e-55	2.380802e-52
MsaG029105	MsaG038136	0.801135	1.739602e-48	2.413065e-46
MsaG029512	MsaG038136	0.807407	8.718756e-50	1.398813e-47
MsaG029922	MsaG038136	0.807886	6.906529e-50	1.120888e-47
MsaG030592	MsaG038136	0.829267	1.015663e-54	2.878169e-52
MsaG031057	MsaG038136	0.865012	1.605426e-64	1.517482e-61
MsaG031926	MsaG038136	0.804708	3.203538e-49	4.823853e-47
MsaG033312	MsaG038136	0.824590	1.317141e-53	3.276260e-51
MsaG033410	MsaG038136	0.806553	1.319165e-49	2.074162e-47
MsaG033568	MsaG038136	0.849576	5.625114e-60	3.005250e-57
MsaG033776	MsaG038136	0.809571	3.026073e-50	5.114564e-48
MsaG034248	MsaG038136	0.801191	1.694279e-48	2.353182e-46
MsaG034252	MsaG038136	0.807785	7.252341e-50	1.174168e-47
MsaG034328	MsaG038136	0.817971	4.356131e-52	9.085543e-50
MsaG034398	MsaG038136	0.809941	2.521057e-50	4.299065e-48
MsaG034851	MsaG038136	0.810486	1.925962e-50	3.328238e-48
MsaG035254	MsaG038136	0.820463	1.186782e-52	2.642404e-50
MsaG035699	MsaG038136	0.813057	5.342879e-51	9.836982e-49
MsaG036577	MsaG038136	0.810776	1.668013e-50	2.902938e-48
MsaG036844	MsaG038136	0.806193	1.569623e-49	2.447058e-47
MsaG039918	MsaG038136	0.858828	1.233244e-62	9.171586e-60
MsaG039843	MsaG038136	0.842997	3.422232e-58	1.469394e-55
MsaG040365	MsaG038136	0.808358	5.485384e-50	9.003718e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038136	MtrunA17_Chr7g0255491	61.753	251	79	4	20	254	1	250	4.83e-87	261
MsaG038136	MtrunA17_Chr7g0239711	50.000	68	27	2	83	146	54	118	7.25e-14	68.9
MsaG038136	MtrunA17_Chr2g0310101	47.692	65	31	2	87	148	60	124	1.70e-11	62.4
MsaG038136	MtrunA17_Chr3g0081121	51.613	62	24	2	86	147	98	153	4.63e-11	62.4
MsaG038136	MtrunA17_Chr3g0081131	41.379	87	41	3	67	143	72	158	7.37e-11	61.6
MsaG038136	MtrunA17_Chr4g0072571	45.946	74	32	3	82	154	43	109	7.47e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038136	AT1G24625.1	34.559	136	73	4	88	216	59	185	1.68e-12	65.5
MsaG038136	AT5G57520.1	51.389	72	22	3	88	156	52	113	2.82e-12	63.5
MsaG038136	AT5G10970.1	42.268	97	38	5	82	170	100	186	5.32e-11	62.4
MsaG038136	AT5G25160.1	40.367	109	45	7	82	190	57	145	8.13e-11	61.2

Find 83 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGATTTCGACTCTAATTT+TGG	0.159297	7:+71901408	None:intergenic
TGAATTATGCCTTCTCTATT+AGG	0.184623	7:+71900688	None:intergenic
CCCCAAGCAACAACACAATT+TGG	0.187401	7:-71900853	MsaT038136.1:CDS
TGACCAATACCTTTCCTTCT+TGG	0.214854	7:-71900963	MsaT038136.1:CDS
TCTTGGCTCGGTTCACCTTA+TGG	0.231125	7:-71900946	MsaT038136.1:CDS
TGGTGTGAGTGCCAAGTCTT+AGG	0.263142	7:+71901328	None:intergenic
CCCAAATTGTGTTGTTGCTT+GGG	0.273537	7:+71900852	None:intergenic
GTTGTTGCTTGGGGTGAATT+TGG	0.275394	7:+71900862	None:intergenic
CCCAAAGTGTTTGACCTTTG+TGG	0.286115	7:+71900784	None:intergenic
GTTCACGCTTATGAGCATTT+TGG	0.317761	7:+71901157	None:intergenic
CGGGTTGCAAGGAGTGTATT+TGG	0.331776	7:+71900901	None:intergenic
TCCACCATTCCCCAAGGGTT+TGG	0.335105	7:+71901296	None:intergenic
AGGTCAAACACTTTGGGTTT+GGG	0.338136	7:-71900778	MsaT038136.1:CDS
CCACAAAGGTCAAACACTTT+GGG	0.340923	7:-71900784	MsaT038136.1:CDS
GTGTTTGACCTTTGTGGAAT+TGG	0.343209	7:+71900790	None:intergenic
AAGGTCAAACACTTTGGGTT+TGG	0.344659	7:-71900779	MsaT038136.1:CDS
CAAGGGTTTGGAAGTGGACT+TGG	0.363013	7:+71901308	None:intergenic
GTCACATATTGGACGCCAAT+TGG	0.375665	7:+71900982	None:intergenic
TCCCAAATTGTGTTGTTGCT+TGG	0.377648	7:+71900851	None:intergenic
TAGTGAATAGAGCTTGAAAA+TGG	0.380905	7:+71901045	None:intergenic
TTCTCCACTTCTCAAGCTCT+TGG	0.384550	7:-71901186	MsaT038136.1:CDS
TAGAAACCTCAAACGCAAAA+TGG	0.385914	7:-71901439	MsaT038136.1:CDS
GAAAGGTATTGGTCACATAT+TGG	0.392979	7:+71900971	None:intergenic
CACCTTATGGTGGCTATGGA+GGG	0.398816	7:-71900933	MsaT038136.1:CDS
TAATAGAGAAGGCATAATTC+AGG	0.407241	7:-71900686	MsaT038136.1:CDS
CCCAAGCAACAACACAATTT+GGG	0.410223	7:-71900852	MsaT038136.1:CDS
TCCACAAAGGTCAAACACTT+TGG	0.411221	7:-71900785	MsaT038136.1:CDS
TTAGGATCACGAGATAATAA+TGG	0.420098	7:+71900706	None:intergenic
ATAGAGCTTGAAAATGGATA+AGG	0.424890	7:+71901051	None:intergenic
TCAACATCAGATTCAGAGAT+TGG	0.439332	7:+71901363	None:intergenic
TCAAGCTCTATTCACTATCA+AGG	0.445268	7:-71901039	MsaT038136.1:CDS
ATTCCCCAAGGGTTTGGAAG+TGG	0.467621	7:+71901302	None:intergenic
TTGGCATTTGCATCACATAC+CGG	0.471216	7:+71900881	None:intergenic
CAAGTCCACTTCCAAACCCT+TGG	0.472875	7:-71901307	MsaT038136.1:CDS
AAGTCCACTTCCAAACCCTT+GGG	0.473221	7:-71901306	MsaT038136.1:CDS
TCACATATTGGACGCCAATT+GGG	0.475144	7:+71900983	None:intergenic
TCACCTTATGGTGGCTATGG+AGG	0.475493	7:-71900934	MsaT038136.1:CDS
TCCACTTCTCAAGCTCTTGG+AGG	0.477317	7:-71901183	MsaT038136.1:CDS
TGATCAATGAAATTTCTTTG+AGG	0.480593	7:+71900748	None:intergenic
TAGAGCTTGAAAATGGATAA+GGG	0.481590	7:+71901052	None:intergenic
GCTAACTTGCACAACCCAAT+TGG	0.486494	7:-71900997	MsaT038136.1:CDS
CTTGAAAATGGATAAGGGTA+TGG	0.493945	7:+71901057	None:intergenic
TAAAAGGAGAGAGGAAGAGA+TGG	0.501837	7:-71901112	MsaT038136.1:CDS
GGTTCACCTTATGGTGGCTA+TGG	0.502207	7:-71900937	MsaT038136.1:CDS
CCAAATTGTGTTGTTGCTTG+GGG	0.502858	7:+71900853	None:intergenic
TTCTTGTCACAATAATTACA+AGG	0.503282	7:+71901210	None:intergenic
AATACCTTTCCTTCTTGGCT+CGG	0.506841	7:-71900958	MsaT038136.1:CDS
ATTATTAGATCTAAACCATA+GGG	0.518656	7:+71901083	None:intergenic
GAGCCAAGAAGGAAAGGTAT+TGG	0.520905	7:+71900960	None:intergenic
ACCCCTCCATAGCCACCATA+AGG	0.522093	7:+71900931	None:intergenic
GGTGTGAGTGCCAAGTCTTA+GGG	0.522108	7:+71901329	None:intergenic
ACTTCCAAACCCTTGGGGAA+TGG	0.528452	7:-71901300	MsaT038136.1:CDS
GATTATTAGATCTAAACCAT+AGG	0.529631	7:+71901082	None:intergenic
GTTGATGATGAGGACACATT+GGG	0.531489	7:+71900658	None:intergenic
TGGCATTTGCATCACATACC+GGG	0.531856	7:+71900882	None:intergenic
ACCTTATGGTGGCTATGGAG+GGG	0.537456	7:-71900932	MsaT038136.1:CDS
ATTAGAGTCGAAATCAAAGA+AGG	0.542585	7:-71901403	MsaT038136.1:CDS
TCTATCCTCATCATTTCCGA+TGG	0.543539	7:+71901458	None:intergenic
TAGCACTACGGAAATATGAA+TGG	0.550571	7:+71901016	None:intergenic
TCCAAACCCTTGGGGAATGG+TGG	0.553032	7:-71901297	MsaT038136.1:CDS
ACCTCCAAGAGCTTGAGAAG+TGG	0.556669	7:+71901182	None:intergenic
AATGGAAGATAAAAGGAGAG+AGG	0.557828	7:-71901121	MsaT038136.1:CDS
CAAATACACTCCTTGCAACC+CGG	0.559377	7:-71900900	MsaT038136.1:CDS
GCATCACATACCGGGTTGCA+AGG	0.562451	7:+71900890	None:intergenic
AAGAGATGGATTCAACCCTA+TGG	0.564603	7:-71901098	MsaT038136.1:CDS
AATCTCTGAATCTGATGTTG+AGG	0.574079	7:-71901361	MsaT038136.1:CDS
TAAGGTGAACCGAGCCAAGA+AGG	0.575815	7:+71900949	None:intergenic
AGTTGATGATGAGGACACAT+TGG	0.595890	7:+71900657	None:intergenic
TGAACCGAGCCAAGAAGGAA+AGG	0.596165	7:+71900954	None:intergenic
TCTCGTGATCCTAATAGAGA+AGG	0.597683	7:-71900697	MsaT038136.1:CDS
TGAATGTCCACCATTCCCCA+AGG	0.598273	7:+71901290	None:intergenic
CCTCAAACGCAAAATGGTGG+AGG	0.605406	7:-71901433	MsaT038136.1:CDS
TCTTGTCACAATAATTACAA+GGG	0.607585	7:+71901211	None:intergenic
TGGCTCGGTTCACCTTATGG+TGG	0.610898	7:-71900943	MsaT038136.1:CDS
AAACCTCAAACGCAAAATGG+TGG	0.616518	7:-71901436	MsaT038136.1:CDS
GAATGTCCACCATTCCCCAA+GGG	0.619462	7:+71901291	None:intergenic
GATTTACTGACCCTAAGACT+TGG	0.622734	7:-71901339	MsaT038136.1:CDS
AATTTCCATCGGAAATGATG+AGG	0.630984	7:-71901463	MsaT038136.1:CDS
GGTTGTGCAAGTTAGCACTA+CGG	0.648362	7:+71901004	None:intergenic
ATGTCTGAGAGAATTTCCAT+CGG	0.657451	7:-71901474	MsaT038136.1:CDS
CTGCATTTCCAATTCCACAA+AGG	0.667747	7:-71900798	MsaT038136.1:CDS
CGTTGATTGAGTTGATGATG+AGG	0.670107	7:+71900648	None:intergenic
AGTCCACTTCCAAACCCTTG+GGG	0.716852	7:-71901305	MsaT038136.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	71900645	71901496	71900645	ID=MsaG038136
Chr7	mRNA	71900645	71901496	71900645	ID=MsaT038136.1;Parent=MsaG038136
Chr7	exon	71900645	71901496	71900645	ID=MsaT038136.1.exon1;Parent=MsaT038136.1
Chr7	CDS	71900645	71901496	71900645	ID=cds.MsaT038136.1;Parent=MsaT038136.1

Gene Sequence

>MsaT038136.1

ATGTCTGAGAGAATTTCCATCGGAAATGATGAGGATAGAAACCTCAAACGCAAAATGGTGGAGGAGCCAAAATTAGAGTCGAAATCAAAGAAGGAGTCAAAGACAATGACACCAATCTCTGAATCTGATGTTGAGGATTTACTGACCCTAAGACTTGGCACTCACACCAAGTCCACTTCCAAACCCTTGGGGAATGGTGGACATTCAAGTTCATTTCAAAACACTATTGATGAACCTTTACCTGAGCAAAAAGTGGTAGAGTTCCCTTGTAATTATTGTGACAAGAAATTCTCCACTTCTCAAGCTCTTGGAGGTCACCAAAATGCTCATAAGCGTGAACGTGTCTTAAAAAAAATGGAAGATAAAAGGAGAGAGGAAGAGATGGATTCAACCCTATGGTTTAGATCTAATAATCAACCATACCCTTATCCATTTTCAAGCTCTATTCACTATCAAGGCCATTCATATTTCCGTAGTGCTAACTTGCACAACCCAATTGGCGTCCAATATGTGACCAATACCTTTCCTTCTTGGCTCGGTTCACCTTATGGTGGCTATGGAGGGGTGTATATGCCAAATACACTCCTTGCAACCCGGTATGTGATGCAAATGCCAAATTCACCCCAAGCAACAACACAATTTGGGATGACTAATTTTTGGGGTGGAGGTCAAAATGCTGCATTTCCAATTCCACAAAGGTCAAACACTTTGGGTTTGGGACTTTTACCTCAAAGAAATTTCATTGATCAACTTCGTTCTCATACTCTTCCATTATTATCTCGTGATCCTAATAGAGAAGGCATAATTCAGGCAAATCCCAATGTGTCCTCATCATCAACTCAATCAACGTAG

Protein sequence

>MsaT038136.1

MSERISIGNDEDRNLKRKMVEEPKLESKSKKESKTMTPISESDVEDLLTLRLGTHTKSTSKPLGNGGHSSSFQNTIDEPLPEQKVVEFPCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDKRREEEMDSTLWFRSNNQPYPYPFSSSIHYQGHSYFRSANLHNPIGVQYVTNTFPSWLGSPYGGYGGVYMPNTLLATRYVMQMPNSPQATTQFGMTNFWGGGQNAAFPIPQRSNTLGLGLLPQRNFIDQLRSHTLPLLSRDPNREGIIQANPNVSSSSTQST*