AlfalfaGEDB | MsaG038137

M. sativa ssp. caerulea / MsaG038137

KEGG: -
GO: -
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038137	XP_003613438.2	72.727	44	12	0	5	48	137	180	1.67e-11	73.6

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038137	tr\|G7K6W4\|G7K6W4_MEDTR	72.727	44	12	0	5	48	137	180	7.98e-12	73.6

TFs/TRs:

Gene ID	Type	Classification
MsaG038137	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000048	MsaG038137	0.801632	1.377319e-48	1.932214e-46
MsaG000202	MsaG038137	0.824640	1.281627e-53	3.192335e-51
MsaG000621	MsaG038137	0.838840	4.168301e-57	1.569348e-54
MsaG000705	MsaG038137	0.843225	2.978048e-58	1.287975e-55
MsaG000792	MsaG038137	0.820130	1.414025e-52	3.120747e-50
MsaG001147	MsaG038137	0.833503	9.322732e-56	2.986840e-53
MsaG001373	MsaG038137	0.829132	1.094816e-54	3.090615e-52
MsaG001490	MsaG038137	0.838880	4.071967e-57	1.534934e-54
MsaG002114	MsaG038137	0.831399	3.078140e-55	9.274070e-53
MsaG002636	MsaG038137	0.822325	4.432625e-53	1.036986e-50
MsaG003576	MsaG038137	0.802853	7.745045e-49	1.117220e-46
MsaG003635	MsaG038137	0.833776	7.971128e-56	2.574374e-53
MsaG003939	MsaG038137	0.813020	5.442991e-51	1.001190e-48
MsaG004086	MsaG038137	0.802061	1.125704e-48	1.594697e-46
MsaG004091	MsaG038137	0.807113	1.005468e-49	1.601915e-47
MsaG004165	MsaG038137	0.836925	1.287987e-56	4.570979e-54
MsaG004339	MsaG038137	0.815257	1.755779e-51	3.416258e-49
MsaG004348	MsaG038137	0.836866	1.333233e-56	4.723200e-54
MsaG004402	MsaG038137	0.815582	1.487839e-51	2.918782e-49
MsaG004404	MsaG038137	0.805601	2.087952e-49	3.209939e-47
MsaG004455	MsaG038137	0.807546	8.150419e-50	1.311952e-47
MsaG005338	MsaG038137	0.803878	4.760834e-49	7.032245e-47
MsaG005631	MsaG038137	0.805890	1.816562e-49	2.811780e-47
MsaG005768	MsaG038137	0.828116	1.922650e-54	5.274907e-52
MsaG005773	MsaG038137	0.803152	6.723067e-49	9.765333e-47
MsaG006186	MsaG038137	0.821396	7.255083e-53	1.655699e-50
MsaG006191	MsaG038137	0.865606	1.046803e-64	1.013088e-61
MsaG006476	MsaG038137	0.815275	1.739842e-51	3.386734e-49
MsaG006589	MsaG038137	0.802152	1.078690e-48	1.531231e-46
MsaG007212	MsaG038137	0.809976	2.478012e-50	4.229228e-48
MsaG007862	MsaG038137	0.813686	3.893146e-51	7.281234e-49
MsaG007970	MsaG038137	0.822361	4.349739e-53	1.018572e-50
MsaG008367	MsaG038137	0.802306	1.002773e-48	1.428572e-46
MsaG008409	MsaG038137	0.812112	8.580807e-51	1.543031e-48
MsaG008410	MsaG038137	0.819024	2.521237e-52	5.404325e-50
MsaG008994	MsaG038137	0.807855	7.010387e-50	1.136899e-47
MsaG009270	MsaG038137	0.806672	1.245042e-49	1.963143e-47
MsaG009871	MsaG038137	0.805771	1.923872e-49	2.969511e-47
MsaG010603	MsaG038137	0.849570	5.644800e-60	3.015192e-57
MsaG010753	MsaG038137	0.836381	1.768960e-56	6.176426e-54
MsaG010792	MsaG038137	0.804804	3.060038e-49	4.618161e-47
MsaG011119	MsaG038137	0.827066	3.425744e-54	9.125617e-52
MsaG011218	MsaG038137	0.847061	2.767053e-59	1.357790e-56
MsaG011238	MsaG038137	0.819669	1.800078e-52	3.924245e-50
MsaG011469	MsaG038137	0.806469	1.373752e-49	2.155794e-47
MsaG012048	MsaG038137	0.813523	4.226728e-51	7.873084e-49
MsaG012078	MsaG038137	0.825060	1.021493e-53	2.573889e-51
MsaG012161	MsaG038137	0.807193	9.673259e-50	1.544063e-47
MsaG012396	MsaG038137	0.804084	4.314885e-49	6.404503e-47
MsaG012488	MsaG038137	0.801003	1.850281e-48	2.558947e-46
MsaG041935	MsaG038137	0.805328	2.379648e-49	3.635300e-47
MsaG041955	MsaG038137	0.816039	1.177444e-51	2.336822e-49
MsaG042634	MsaG038137	0.817365	5.957257e-52	1.223267e-49
MsaG042790	MsaG038137	0.822325	4.432333e-53	1.036922e-50
MsaG042796	MsaG038137	0.812506	7.043460e-51	1.279113e-48
MsaG043183	MsaG038137	0.820500	1.164087e-52	2.594359e-50
MsaG044267	MsaG038137	0.818056	4.168837e-52	8.713906e-50
MsaG044325	MsaG038137	0.828157	1.879720e-54	5.162956e-52
MsaG044575	MsaG038137	0.848200	1.349737e-59	6.881127e-57
MsaG045044	MsaG038137	0.820442	1.199714e-52	2.669780e-50
MsaG045143	MsaG038137	0.840390	1.654886e-57	6.540205e-55
MsaG045187	MsaG038137	0.800042	2.899360e-48	3.923778e-46
MsaG045542	MsaG038137	0.812606	6.699711e-51	1.219687e-48
MsaG045796	MsaG038137	0.809747	2.774394e-50	4.709020e-48
MsaG046098	MsaG038137	0.824839	1.151410e-53	2.883646e-51
MsaG046755	MsaG038137	0.819750	1.724902e-52	3.768452e-50
MsaG046860	MsaG038137	0.838716	4.485721e-57	1.682231e-54
MsaG046805	MsaG038137	0.805219	2.507591e-49	3.821080e-47
MsaG046866	MsaG038137	0.812156	8.394144e-51	1.511083e-48
MsaG046973	MsaG038137	0.816345	1.006821e-51	2.013862e-49
MsaG047001	MsaG038137	0.804800	3.065663e-49	4.626189e-47
MsaG007676	MsaG038137	0.801787	1.280668e-48	1.802924e-46
MsaG008384	MsaG038137	0.825221	9.360946e-54	2.369134e-51
MsaG010542	MsaG038137	0.834457	5.391845e-56	1.777034e-53
MsaG007270	MsaG038137	0.811083	1.432737e-50	2.512245e-48
MsaG008699	MsaG038137	0.807566	8.069234e-50	1.299511e-47
MsaG008985	MsaG038137	0.806717	1.218640e-49	1.923499e-47
MsaG013164	MsaG038137	0.828037	2.008297e-54	5.497640e-52
MsaG013395	MsaG038137	0.809455	3.202784e-50	5.398196e-48
MsaG011693	MsaG038137	0.808150	6.069794e-50	9.913570e-48
MsaG011544	MsaG038137	0.800708	2.124326e-48	2.918617e-46
MsaG015535	MsaG038137	0.830884	4.114395e-55	1.221245e-52
MsaG018733	MsaG038137	0.801319	1.595442e-48	2.222367e-46
MsaG020996	MsaG038137	0.805722	1.969422e-49	3.036374e-47
MsaG019406	MsaG038137	0.812632	6.613803e-51	1.204791e-48
MsaG028057	MsaG038137	0.812694	6.412447e-51	1.169923e-48
MsaG026524	MsaG038137	0.806263	1.517421e-49	2.369668e-47
MsaG024981	MsaG038137	0.803367	6.070757e-49	8.861773e-47
MsaG031529	MsaG038137	0.815059	1.942018e-51	3.759579e-49
MsaG031416	MsaG038137	0.831343	3.176473e-55	9.554207e-53
MsaG033013	MsaG038137	0.806901	1.114471e-49	1.766702e-47
MsaG030574	MsaG038137	0.816910	7.531852e-52	1.528563e-49
MsaG030876	MsaG038137	0.819373	2.100757e-52	4.544714e-50
MsaG037651	MsaG038137	0.811282	1.297720e-50	2.286626e-48
MsaG037437	MsaG038137	0.806001	1.721976e-49	2.672230e-47
MsaG038137	MsaG036052	0.847047	2.792648e-59	1.369672e-56
MsaG012887	MsaG038137	0.827493	2.709724e-54	7.305279e-52
MsaG013968	MsaG038137	0.843810	2.081189e-58	9.171486e-56
MsaG014471	MsaG038137	0.800457	2.389318e-48	3.264029e-46
MsaG016179	MsaG038137	0.804515	3.513648e-49	5.267253e-47
MsaG016261	MsaG038137	0.826318	5.155660e-54	1.345110e-51
MsaG016472	MsaG038137	0.808169	6.015988e-50	9.830142e-48
MsaG016531	MsaG038137	0.815676	1.417566e-51	2.787637e-49
MsaG017061	MsaG038137	0.809282	3.487101e-50	5.852424e-48
MsaG017243	MsaG038137	0.838638	4.699911e-57	1.758244e-54
MsaG017461	MsaG038137	0.849929	4.487351e-60	2.426136e-57
MsaG017568	MsaG038137	0.808643	4.770916e-50	7.885139e-48
MsaG017587	MsaG038137	0.815505	1.547372e-51	3.029597e-49
MsaG017725	MsaG038137	0.811152	1.384357e-50	2.431493e-48
MsaG017919	MsaG038137	0.820273	1.311151e-52	2.904755e-50
MsaG017992	MsaG038137	0.830545	4.974917e-55	1.462320e-52
MsaG018385	MsaG038137	0.808774	4.475381e-50	7.420093e-48
MsaG018439	MsaG038137	0.825903	6.466129e-54	1.667747e-51
MsaG019209	MsaG038137	0.823788	2.028251e-53	4.936528e-51
MsaG019211	MsaG038137	0.833462	9.540270e-56	3.052897e-53
MsaG019557	MsaG038137	0.813706	3.852821e-51	7.209588e-49
MsaG019641	MsaG038137	0.802845	7.775163e-49	1.121347e-46
MsaG019669	MsaG038137	0.813674	3.916107e-51	7.322115e-49
MsaG020860	MsaG038137	0.825693	7.247753e-54	1.858394e-51
MsaG021054	MsaG038137	0.820199	1.363324e-52	3.014447e-50
MsaG021109	MsaG038137	0.830192	6.065148e-55	1.764949e-52
MsaG022226	MsaG038137	0.851794	1.346064e-60	7.762775e-58
MsaG022540	MsaG038137	0.809212	3.609701e-50	6.047964e-48
MsaG022550	MsaG038137	0.800475	2.368563e-48	3.236994e-46
MsaG023110	MsaG038137	0.803323	6.198471e-49	9.039028e-47
MsaG023554	MsaG038137	0.828365	1.674920e-54	4.627718e-52
MsaG023970	MsaG038137	0.822859	3.334639e-53	7.914431e-51
MsaG023979	MsaG038137	0.816510	9.249295e-52	1.857863e-49
MsaG024205	MsaG038137	0.809001	4.002628e-50	6.672760e-48
MsaG024405	MsaG038137	0.831854	2.380260e-55	7.267750e-53
MsaG024425	MsaG038137	0.803777	4.996121e-49	7.362564e-47
MsaG024459	MsaG038137	0.808342	5.528284e-50	9.070677e-48
MsaG026553	MsaG038137	0.818362	3.557559e-52	7.495076e-50
MsaG027021	MsaG038137	0.810308	2.103434e-50	3.619129e-48
MsaG027041	MsaG038137	0.806643	1.262749e-49	1.989695e-47
MsaG027155	MsaG038137	0.803120	6.823088e-49	9.903572e-47
MsaG027679	MsaG038137	0.821033	8.789584e-53	1.986789e-50
MsaG028232	MsaG038137	0.804653	3.289146e-49	4.946484e-47
MsaG028511	MsaG038137	0.800942	1.904236e-48	2.629940e-46
MsaG028632	MsaG038137	0.822749	3.536758e-53	8.369052e-51
MsaG028906	MsaG038137	0.814739	2.284774e-51	4.387645e-49
MsaG029064	MsaG038137	0.817608	5.256888e-52	1.086182e-49
MsaG029214	MsaG038137	0.838969	3.861774e-57	1.459741e-54
MsaG029295	MsaG038137	0.828569	1.496334e-54	4.157824e-52
MsaG029315	MsaG038137	0.843488	2.534910e-58	1.105699e-55
MsaG029621	MsaG038137	0.838124	6.368233e-57	2.344551e-54
MsaG029944	MsaG038137	0.813417	4.458695e-51	8.283002e-49
MsaG030201	MsaG038137	0.805356	2.347896e-49	3.589135e-47
MsaG030619	MsaG038137	0.829087	1.122690e-54	3.165321e-52
MsaG031093	MsaG038137	0.833486	9.413955e-56	3.014503e-53
MsaG031216	MsaG038137	0.800514	2.326004e-48	3.181603e-46
MsaG031475	MsaG038137	0.832396	1.751093e-55	5.430984e-53
MsaG031706	MsaG038137	0.823723	2.100374e-53	5.103026e-51
MsaG032227	MsaG038137	0.811417	1.213216e-50	2.144825e-48
MsaG032492	MsaG038137	0.813275	4.789065e-51	8.864900e-49
MsaG032554	MsaG038137	0.802994	7.244688e-49	1.048484e-46
MsaG033289	MsaG038137	0.809617	2.957280e-50	5.003782e-48
MsaG033936	MsaG038137	0.810131	2.294947e-50	3.931601e-48
MsaG033931	MsaG038137	0.818361	3.558209e-52	7.496392e-50
MsaG033932	MsaG038137	0.844740	1.173992e-58	5.333728e-56
MsaG033933	MsaG038137	0.860290	4.503775e-63	3.541376e-60
MsaG034370	MsaG038137	0.802729	8.211403e-49	1.181157e-46
MsaG034510	MsaG038137	0.811129	1.400346e-50	2.458164e-48
MsaG034689	MsaG038137	0.802530	9.021778e-49	1.291866e-46
MsaG035157	MsaG038137	0.847383	2.260232e-59	1.121136e-56
MsaG035271	MsaG038137	0.813780	3.712799e-51	6.960593e-49
MsaG036138	MsaG038137	0.805308	2.403610e-49	3.670081e-47
MsaG036431	MsaG038137	0.806851	1.142091e-49	1.808316e-47
MsaG036594	MsaG038137	0.843422	2.640534e-58	1.149262e-55
MsaG037261	MsaG038137	0.808254	5.771880e-50	9.450479e-48
MsaG037309	MsaG038137	0.802672	8.436569e-49	1.211987e-46
MsaG037339	MsaG038137	0.844941	1.037140e-58	4.744013e-56
MsaG037735	MsaG038137	0.805440	2.254951e-49	3.453777e-47
MsaG037924	MsaG038137	0.804039	4.409526e-49	6.538112e-47
MsaG037969	MsaG038137	0.808355	5.492908e-50	9.015411e-48
MsaG038993	MsaG038137	0.818669	3.032558e-52	6.440166e-50
MsaG039483	MsaG038137	0.814533	2.536010e-51	4.844908e-49
MsaG040540	MsaG038137	0.818050	4.182551e-52	8.741149e-50
MsaG040731	MsaG038137	0.821541	6.718783e-53	1.539220e-50
MsaG041086	MsaG038137	0.802373	9.716739e-49	1.386391e-46
MsaG041505	MsaG038137	0.800212	2.677863e-48	3.637914e-46
MsaG041680	MsaG038137	0.800855	1.983341e-48	2.733851e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038137	MtrunA17_Chr5g0415031	72.727	44	12	0	5	48	137	180	1.54e-15	73.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 42 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCGTTCATTGTATGCAAATA+TGG	0.177819	7:+71908871	None:intergenic
TTAACAATGAAGTTCCTTAT+TGG	0.182133	7:-71908595	MsaT038137.1:CDS
ATAAGGAACTTCATTGTTAA+TGG	0.202647	7:+71908598	None:intergenic
TCATGTTTACAAGTCATTTC+TGG	0.210390	7:-71910357	MsaT038137.1:CDS
AAGCTTCTTCTTACCGAATA+TGG	0.221899	7:+71909058	None:intergenic
TTCCGAGGTCATTTGGTTCC+TGG	0.287179	7:-71908719	MsaT038137.1:CDS
TGAAACCGAGTCTGCATAAA+AGG	0.295350	7:+71910389	None:intergenic
ACTTGATTTCTTTCACAAAA+AGG	0.305474	7:+71908749	None:intergenic
TGTAAATCATTTATCCAATA+AGG	0.324437	7:+71908581	None:intergenic
GGAAGATTGGCATTCATAGA+AGG	0.377655	7:+71909012	None:intergenic
TGTTCATTTCCGAGGTCATT+TGG	0.399122	7:-71908726	MsaT038137.1:CDS
ATCATCCCACACACCATATT+CGG	0.400509	7:-71909071	MsaT038137.1:CDS
TCCGAGGTCATTTGGTTCCT+GGG	0.414120	7:-71908718	MsaT038137.1:CDS
ACTCTTGCAAAGAGGAAGAT+TGG	0.441241	7:+71908999	None:intergenic
AATTTGAAAGGCAGTAAAAT+CGG	0.443501	7:-71908910	MsaT038137.1:CDS
ACAGAGTCATTACCCGTTCA+AGG	0.453373	7:-71908676	MsaT038137.1:CDS
CGTTCATTGTATGCAAATAT+GGG	0.464020	7:+71908872	None:intergenic
ATTGTATGCAAATATGGGCC+TGG	0.465098	7:+71908877	None:intergenic
CTAATGGTAATTAGAAATGC+TGG	0.466828	7:-71908949	MsaT038137.1:intron
GAACGATGGTGTCCTTGAAC+GGG	0.488560	7:+71908664	None:intergenic
TTTATGCAGACTCGGTTTCA+GGG	0.488613	7:-71910386	MsaT038137.1:CDS
CTGCCGCAATTGAATTTGAA+AGG	0.501797	7:-71908922	MsaT038137.1:CDS
TTGTATGCAAATATGGGCCT+GGG	0.507064	7:+71908878	None:intergenic
TCATAGAAGGGGCTGATGGT+TGG	0.508105	7:+71909025	None:intergenic
GGATATGCGACATACACAAC+AGG	0.519767	7:+71908619	None:intergenic
TTCTTACCGAATATGGTGTG+TGG	0.522091	7:+71909065	None:intergenic
AATCAAGTTGTTCATTTCCG+AGG	0.538622	7:-71908734	MsaT038137.1:CDS
GAAGATTGGCATTCATAGAA+GGG	0.557607	7:+71909013	None:intergenic
ATCACCCTGGTCTACAAAAG+AGG	0.559172	7:-71910299	MsaT038137.1:intron
CATATTGAATACGTACAGAA+AGG	0.566699	7:-71910333	MsaT038137.1:CDS
GCATTCATAGAAGGGGCTGA+TGG	0.568861	7:+71909021	None:intergenic
CATATCTAACTCTTGCAAAG+AGG	0.574507	7:+71908991	None:intergenic
ATACGTACAGAAAGGAAAGT+AGG	0.588510	7:-71910325	MsaT038137.1:CDS
TGAACGATGGTGTCCTTGAA+CGG	0.596531	7:+71908663	None:intergenic
AAAATCGGAAAGCAATTCCC+AGG	0.598355	7:-71908895	MsaT038137.1:CDS
CTGCCTTTCAAATTCAATTG+CGG	0.611889	7:+71908919	None:intergenic
TCTTACCGAATATGGTGTGT+GGG	0.613886	7:+71909066	None:intergenic
GGAAAGTAGGCCTATCACCC+TGG	0.616094	7:-71910312	MsaT038137.1:CDS
TCCCAGGAACCAAATGACCT+CGG	0.629938	7:+71908717	None:intergenic
AAGATTGGCATTCATAGAAG+GGG	0.643466	7:+71909014	None:intergenic
CACAACAGGAACTATTTCTG+CGG	0.645147	7:+71908633	None:intergenic
CTGCGGTGTTGAGTGAACGA+TGG	0.681087	7:+71908650	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	71908591	71910417	71908591	ID=MsaG038137
Chr7	mRNA	71908591	71910417	71908591	ID=MsaT038137.1;Parent=MsaG038137
Chr7	exon	71908591	71908791	71908591	ID=MsaT038137.1.exon4;Parent=MsaT038137.1
Chr7	CDS	71908591	71908791	71908591	ID=cds.MsaT038137.1;Parent=MsaT038137.1
Chr7	exon	71908870	71908957	71908870	ID=MsaT038137.1.exon3;Parent=MsaT038137.1
Chr7	CDS	71908870	71908957	71908870	ID=cds.MsaT038137.1;Parent=MsaT038137.1
Chr7	exon	71909001	71909103	71909001	ID=MsaT038137.1.exon2;Parent=MsaT038137.1
Chr7	CDS	71909001	71909103	71909001	ID=cds.MsaT038137.1;Parent=MsaT038137.1
Chr7	exon	71910300	71910417	71910300	ID=MsaT038137.1.exon1;Parent=MsaT038137.1
Chr7	CDS	71910300	71910417	71910300	ID=cds.MsaT038137.1;Parent=MsaT038137.1

Gene Sequence

>MsaT038137.1

ATGGTTCCTTTTATGCAGACTCGGTTTCAGGGCAATGTTCATGTTTACAAGTCATTTCTGGACATATTGAATACGTACAGAAAGGAAAGTAGGCCTATCACCCTGGTCTACAAAAGAGTTTCTTCATCATCATCCCACACACCATATTCGGTAAGAAGAAGCTTCATCACTGCTCCAACCATCAGCCCCTTCTATGAATGCCAATCTTCCTCTTTGCAAGAAAATGCTGGTCTTCTGCCGCAATTGAATTTGAAAGGCAGTAAAATCGGAAAGCAATTCCCAGGCCCATATTTGCATACAATGAACGATTTTATTTGCCACGCTCGCTTCCTTTTTGTGAAAGAAATCAAGTTGTTCATTTCCGAGGTCATTTGGTTCCTGGGAAATACACTCTACAAAACAACAGAGTCATTACCCGTTCAAGGACACCATCGTTCACTCAACACCGCAGAAATAGTTCCTGTTGTGTATGTCGCATATCCATTAACAATGAAGTTCCTTATTGGATAA

Protein sequence

>MsaT038137.1

MVPFMQTRFQGNVHVYKSFLDILNTYRKESRPITLVYKRVSSSSSHTPYSVRRSFITAPTISPFYECQSSSLQENAGLLPQLNLKGSKIGKQFPGPYLHTMNDFICHARFLFVKEIKLFISEVIWFLGNTLYKTTESLPVQGHHRSLNTAEIVPVVYVAYPLTMKFLIG*