AlfalfaGEDB | MsaG038138

M. sativa ssp. caerulea / MsaG038138

KEGG: K11644
GO: GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038138	XP_003613438.2	87.619	105	6	1	130	227	28	132	2.26e-48	181

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038138	sp\|O04539\|SNL4_ARATH	70.408	98	21	2	138	227	7	104	4.40e-33	129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038138	tr\|G7K6W4\|G7K6W4_MEDTR	87.619	105	6	1	130	227	28	132	1.08e-48	181

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TFs/TRs:

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Gene ID	Type	Classification
MsaG038138	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038138	MtrunA17_Chr5g0415031	87.619	105	6	1	130	227	28	132	2.07e-52	181
MsaG038138	MtrunA17_Chr8g0364231	61.947	113	31	2	127	227	19	131	2.64e-36	135
MsaG038138	MtrunA17_Chr6g0452001	63.542	96	28	1	139	227	57	152	2.95e-30	117
MsaG038138	MtrunA17_Chr6g0452021	61.458	96	28	3	139	227	37	130	5.73e-26	104
MsaG038138	MtrunA17_Chr1g0206781	59.091	66	27	0	150	215	23	88	5.89e-23	89.7
MsaG038138	MtrunA17_Chr1g0206771	56.757	74	32	0	131	204	9	82	6.63e-23	91.7
MsaG038138	MtrunA17_Chr1g0206771	49.254	67	34	0	140	206	97	163	1.89e-14	68.9
MsaG038138	MtrunA17_Chr1g0205811	61.429	70	27	0	146	215	22	91	9.44e-22	86.7
MsaG038138	MtrunA17_Chr8g0364021	47.674	86	38	1	135	213	34	119	1.57e-19	84.0
MsaG038138	MtrunA17_Chr1g0156171	90.244	41	4	0	168	208	17	57	1.71e-19	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038138	AT1G70060.2	70.408	98	21	2	138	227	7	104	4.48e-34	129
MsaG038138	AT1G70060.1	70.408	98	21	2	138	227	7	104	4.48e-34	129
MsaG038138	AT1G24190.3	68.041	97	24	1	138	227	7	103	7.04e-34	129
MsaG038138	AT1G24190.1	68.041	97	24	1	138	227	7	103	8.37e-34	128
MsaG038138	AT1G24190.2	68.041	97	24	1	138	227	7	103	8.45e-34	128
MsaG038138	AT3G01320.1	63.000	100	27	3	136	227	48	145	3.77e-29	115
MsaG038138	AT3G01320.2	63.000	100	27	3	136	227	48	145	4.03e-29	115
MsaG038138	AT1G59890.2	70.370	81	22	1	146	226	53	131	9.25e-29	114
MsaG038138	AT1G59890.3	70.370	81	22	1	146	226	53	131	1.02e-28	114
MsaG038138	AT1G59890.1	70.370	81	22	1	146	226	53	131	1.02e-28	114

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Find 58 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACGAAGGAGTTTATTG+TGG	0.626886	7:-71912707	MsaT038138.1:CDS
AACAATACCTTCAAATAAGA+AGG	0.490879	7:+71911629	None:intergenic
AACCACGACGGATGAAAGGA+AGG	0.581908	7:+71912525	None:intergenic
AAGATCAAGTTTCAAGGTCC+GGG	0.505302	7:-71910904	MsaT038138.1:CDS
AAGGTGGGGATTGGATCCGA+CGG	0.628351	7:-71912677	MsaT038138.1:CDS
AAGTGAGAGAGCTTCTCCGT+CGG	0.665311	7:+71912661	None:intergenic
AATTTGGGGATGAGTTTAAG+GGG	0.576658	7:-71912735	MsaT038138.1:CDS
ACAGTTGTGGTGGAGGAATT+TGG	0.147001	7:-71912751	MsaT038138.1:CDS
ACTGACTACTAATGATGTCA+AGG	0.576783	7:-71910855	MsaT038138.1:CDS
AGATAAGAAGGAAAAGTATG+AGG	0.539361	7:-71910822	MsaT038138.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	71910516	71912779	71910516	ID=MsaG038138
Chr7	mRNA	71910516	71912779	71910516	ID=MsaT038138.1;Parent=MsaG038138
Chr7	exon	71910516	71910687	71910516	ID=MsaT038138.1.exon4;Parent=MsaT038138.1
Chr7	CDS	71910516	71910687	71910516	ID=cds.MsaT038138.1;Parent=MsaT038138.1
Chr7	exon	71910785	71910923	71910785	ID=MsaT038138.1.exon3;Parent=MsaT038138.1
Chr7	CDS	71910785	71910923	71910785	ID=cds.MsaT038138.1;Parent=MsaT038138.1
Chr7	exon	71911637	71911712	71911637	ID=MsaT038138.1.exon2;Parent=MsaT038138.1
Chr7	CDS	71911637	71911712	71911637	ID=cds.MsaT038138.1;Parent=MsaT038138.1
Chr7	exon	71912483	71912779	71912483	ID=MsaT038138.1.exon1;Parent=MsaT038138.1
Chr7	CDS	71912483	71912779	71912483	ID=cds.MsaT038138.1;Parent=MsaT038138.1

Gene Sequence

>MsaT038138.1

ATGAATACAGTTGTGGTGGAGGAATTTGGGGATGAGTTTAAGGGGAATGAAAAGACGAAGGAGTTTATTGTGGCGATGAAAAGGTGGGGATTGGATCCGACGGAGAAGCTCTCTCACTTTCACTCCCACTCTCACTCAGTTCCCAAATCTCTTCCTCCCGCAACGCACAAAAAAACCCTCTCGCCTCAAGCACTCCACCATAGACTGTCGACGACGAGCATTTCGAATGTCGCCTTCCTTTCATCCGTCGTGGTTGGCTTGGATTGGGGAGAGAAGAAAAGAAAAAACACAATGATGCTTTATTTTACAATTTACAGATTTTTGCTGATGGAGCTGTGGACTTTGGCTATTGAATGTGCCTTCTTATTTGAAGATCAAGTTTCAAGGTCCGGGCAACCGCCAAATCGAGATGGTCAAAAACTGACTACTAATGATGTCAAGGATATTTTTCAAGATAAGAAGGAAAAGTATGAGGACTTTTTGGAGGTTATGAAAGATTTTAAAGCACAAAGAGTTGATACTGATGGTGTCATTGAAAGAGTGAAGGAACTTTTTAGAGGTCAGAGAGACTTGATCTTGGGATTTAACACCTTTCTGCCAAAGGGCCATGAGATTACCCTTTCGTCTGAGGATGAGCAACCTCAACTAAAAAAGAAGTTTGAATTTTATGAAGCTATGAGTTAG

Protein sequence

>MsaT038138.1

MNTVVVEEFGDEFKGNEKTKEFIVAMKRWGLDPTEKLSHFHSHSHSVPKSLPPATHKKTLSPQALHHRLSTTSISNVAFLSSVVVGLDWGEKKRKNTMMLYFTIYRFLLMELWTLAIECAFLFEDQVSRSGQPPNRDGQKLTTNDVKDIFQDKKEKYEDFLEVMKDFKAQRVDTDGVIERVKELFRGQRDLILGFNTFLPKGHEITLSSEDEQPQLKKKFEFYEAMS*