AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG038158

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG038158 MtrunA17_Chr7g0243401 100.000 139 0 0 41 179 583 721 1.21e-95 292
MsaG038158 MtrunA17_Chr4g0005411 74.834 151 26 2 41 179 571 721 3.15e-66 215
MsaG038158 MtrunA17_Chr1g0174251 55.172 116 48 1 64 179 534 645 2.41e-38 138
MsaG038158 MtrunA17_Chr1g0209211 40.708 113 62 2 67 179 597 704 4.19e-24 98.2
MsaG038158 MtrunA17_Chr5g0423121 38.462 117 68 2 63 179 495 607 1.48e-21 90.9
MsaG038158 MtrunA17_Chr3g0128551 40.945 127 69 4 54 179 493 614 4.91e-21 89.4
MsaG038158 MtrunA17_Chr1g0209521 39.516 124 71 3 58 179 516 637 2.36e-20 87.4
MsaG038158 MtrunA17_Chr5g0432851 36.154 130 77 4 51 179 503 627 1.14e-17 79.7
MsaG038158 MtrunA17_Chr3g0108301 36.752 117 69 3 63 179 515 626 1.25e-17 79.7
MsaG038158 MtrunA17_Chr5g0434551 40.171 117 65 3 63 179 499 610 1.66e-17 79.3
MsaG038158 MtrunA17_Chr7g0262141 41.121 107 56 3 67 172 882 982 8.14e-17 77.4
MsaG038158 MtrunA17_Chr1g0183231 41.509 106 56 4 67 172 873 972 1.50e-16 76.6
MsaG038158 MtrunA17_Chr6g0478621 37.705 122 71 3 58 179 532 648 2.38e-16 75.9
MsaG038158 MtrunA17_Chr8g0387791 38.462 117 67 3 63 179 484 595 4.31e-16 75.1
MsaG038158 MtrunA17_Chr3g0126281 37.405 131 75 4 51 179 202 327 5.38e-16 74.3
MsaG038158 MtrunA17_Chr8g0393211 36.885 122 72 3 58 179 529 645 1.11e-15 73.9
MsaG038158 MtrunA17_Chr5g0428541 35.878 131 79 4 51 179 460 587 1.36e-15 73.6
MsaG038158 MtrunA17_Chr3g0106221 39.850 133 58 6 59 178 682 805 1.69e-15 73.6
MsaG038158 MtrunA17_Chr3g0142271 41.228 114 56 4 67 177 1023 1128 2.84e-15 72.8
MsaG038158 MtrunA17_Chr2g0280191 38.739 111 61 3 67 177 860 963 3.31e-15 72.8
MsaG038158 MtrunA17_Chr8g0359581 40.351 114 53 4 64 177 79 177 3.36e-15 70.1
MsaG038158 MtrunA17_Chr4g0062911 36.000 125 75 3 55 179 498 617 3.86e-15 72.4
MsaG038158 MtrunA17_Chr5g0396941 37.607 117 68 3 63 179 461 572 3.99e-15 72.4
MsaG038158 MtrunA17_Chr3g0106201 39.695 131 57 6 59 176 666 787 7.17e-15 71.6
MsaG038158 MtrunA17_Chr3g0106211 39.259 135 60 6 57 178 675 800 1.11e-14 71.2
MsaG038158 MtrunA17_Chr2g0313911 45.217 115 57 3 64 178 237 345 1.13e-14 70.9
MsaG038158 MtrunA17_Chr2g0312651 40.187 107 57 3 67 172 978 1078 1.34e-14 70.9
MsaG038158 MtrunA17_Chr7g0265601 33.784 148 88 5 40 179 514 659 1.41e-14 70.9
MsaG038158 MtrunA17_Chr3g0106121 35.294 153 66 7 39 177 661 794 1.47e-14 70.9
MsaG038158 MtrunA17_Chr1g0190411 39.252 107 58 4 67 172 879 979 1.75e-14 70.5
MsaG038158 MtrunA17_Chr7g0245171 35.398 113 68 3 67 179 499 606 1.90e-14 70.5
MsaG038158 MtrunA17_Chr1g0160921 37.273 110 64 3 64 173 216 320 2.12e-14 70.1
MsaG038158 MtrunA17_Chr7g0276571 38.053 113 65 3 67 179 584 691 5.33e-14 69.3
MsaG038158 MtrunA17_Chr3g0106161 39.552 134 56 7 59 179 505 626 5.39e-14 69.3
MsaG038158 MtrunA17_Chr8g0345471 36.842 133 75 4 51 179 559 686 5.58e-14 68.9
MsaG038158 MtrunA17_Chr3g0126271 35.897 117 70 3 63 179 482 593 6.49e-14 68.9
MsaG038158 MtrunA17_Chr8g0376131 36.522 115 67 4 64 178 217 325 6.73e-14 68.6
MsaG038158 MtrunA17_Chr1g0189871 42.202 109 54 5 67 172 970 1072 8.07e-14 68.6
MsaG038158 MtrunA17_Chr7g0237351 37.097 124 71 4 59 178 672 792 9.81e-14 68.6
MsaG038158 MtrunA17_Chr5g0440211 41.525 118 57 4 64 174 865 977 1.38e-13 68.2
MsaG038158 MtrunA17_Chr1g0179521 36.975 119 63 3 61 179 522 628 1.40e-13 67.8
MsaG038158 MtrunA17_Chr2g0289161 38.400 125 70 4 56 179 580 698 1.49e-13 67.8
MsaG038158 MtrunA17_Chr6g0474991 35.398 113 68 4 64 176 29 136 1.59e-13 65.5
MsaG038158 MtrunA17_Chr3g0079661 41.053 95 52 2 78 172 1094 1184 2.57e-13 67.4
MsaG038158 MtrunA17_Chr4g0071371 30.508 118 71 3 58 172 294 403 2.82e-13 67.0
MsaG038158 MtrunA17_Chr7g0252301 37.931 116 68 4 64 179 1018 1129 2.92e-13 67.0
MsaG038158 MtrunA17_Chr6g0478181 33.588 131 83 3 51 179 417 545 3.25e-13 67.0
MsaG038158 MtrunA17_Chr3g0126181 39.831 118 58 5 67 179 935 1044 4.30e-13 66.6
MsaG038158 MtrunA17_Chr5g0440231 38.017 121 69 3 56 172 822 940 5.09e-13 66.2
MsaG038158 MtrunA17_Chr7g0222321 36.000 125 74 4 55 179 887 1005 7.01e-13 65.9
MsaG038158 MtrunA17_Chr7g0222221 36.800 125 73 4 55 179 179 297 1.06e-12 64.7
MsaG038158 MtrunA17_Chr2g0334191 37.931 116 64 4 64 176 958 1068 1.18e-12 65.5
MsaG038158 MtrunA17_Chr4g0053161 38.211 123 69 4 59 177 691 810 1.29e-12 65.1
MsaG038158 MtrunA17_Chr2g0277081 39.252 107 56 4 67 172 856 954 1.30e-12 65.1
MsaG038158 MtrunA17_Chr4g0037561 36.792 106 62 2 67 172 533 633 1.31e-12 65.1
MsaG038158 MtrunA17_Chr5g0408941 37.069 116 68 3 64 179 261 371 1.33e-12 65.1
MsaG038158 MtrunA17_Chr3g0106191 39.200 125 66 5 59 176 582 703 1.37e-12 65.1
MsaG038158 MtrunA17_Chr4g0053411 37.719 114 57 4 67 178 662 763 1.84e-12 64.7
MsaG038158 MtrunA17_Chr3g0140861 42.478 113 52 6 64 172 827 930 1.88e-12 64.7
MsaG038158 MtrunA17_Chr7g0234561 36.585 123 71 4 59 177 612 731 2.04e-12 64.7
MsaG038158 MtrunA17_Chr4g0000081 37.719 114 64 4 67 179 570 677 2.18e-12 64.3
MsaG038158 MtrunA17_Chr7g0222261 36.800 125 73 4 55 179 288 406 2.44e-12 64.3
MsaG038158 MtrunA17_Chr7g0258081 31.858 113 71 3 67 179 763 869 3.24e-12 63.9
MsaG038158 MtrunA17_Chr5g0398441 35.821 134 76 5 49 179 759 885 3.77e-12 63.9
MsaG038158 MtrunA17_Chr3g0106151 38.400 125 67 5 59 176 661 782 3.81e-12 63.9
MsaG038158 MtrunA17_Chr3g0106181 35.762 151 65 7 40 177 206 337 3.85e-12 63.5
MsaG038158 MtrunA17_Chr5g0400701 34.328 134 68 3 59 177 868 996 4.22e-12 63.9
MsaG038158 MtrunA17_Chr8g0359691 38.333 120 68 4 58 177 823 936 4.30e-12 63.5
MsaG038158 MtrunA17_Chr2g0278851 38.596 114 65 4 64 177 437 545 4.87e-12 63.5
MsaG038158 MtrunA17_Chr3g0140871 40.351 114 61 5 64 177 854 960 5.39e-12 63.5
MsaG038158 MtrunA17_Chr1g0206361 31.818 110 69 4 64 173 509 612 5.90e-12 63.2
MsaG038158 MtrunA17_Chr5g0394001 33.884 121 71 6 52 169 481 595 6.05e-12 63.2
MsaG038158 MtrunA17_Chr1g0206351 34.783 115 69 4 58 172 513 621 7.33e-12 62.8
MsaG038158 MtrunA17_Chr2g0324931 36.842 114 61 5 67 179 863 966 7.39e-12 63.2
MsaG038158 MtrunA17_Chr7g0258431 37.705 122 68 4 56 172 1 119 7.85e-12 61.6
MsaG038158 MtrunA17_Chr8g0359641 36.842 114 66 3 64 177 832 939 8.70e-12 62.8
MsaG038158 MtrunA17_Chr5g0419721 37.719 114 60 5 67 179 817 920 9.37e-12 62.8
MsaG038158 MtrunA17_Chr1g0203631 35.652 115 69 5 58 172 1152 1261 1.09e-11 62.4
MsaG038158 MtrunA17_Chr1g0205771 36.697 109 63 4 64 172 509 611 1.10e-11 62.4
MsaG038158 MtrunA17_Chr3g0111631 33.065 124 74 4 58 179 245 361 1.11e-11 62.4
MsaG038158 MtrunA17_Chr4g0064201 36.975 119 70 3 58 176 277 390 1.17e-11 62.4
MsaG038158 MtrunA17_Chr1g0159161 37.607 117 66 3 63 179 447 556 1.19e-11 62.4
MsaG038158 MtrunA17_Chr7g0237341 38.211 123 69 5 59 177 668 787 1.37e-11 62.4
MsaG038158 MtrunA17_Chr2g0333691 35.833 120 72 3 57 176 277 391 1.39e-11 62.0
MsaG038158 MtrunA17_Chr4g0017251 32.479 117 73 3 56 172 833 943 1.46e-11 62.0
MsaG038158 MtrunA17_Chr1g0206331 33.621 116 71 4 64 179 501 610 1.57e-11 62.0
MsaG038158 MtrunA17_Chr1g0209361 41.346 104 51 4 80 179 521 618 1.63e-11 62.0
MsaG038158 MtrunA17_Chr8g0359651 35.088 114 68 3 64 177 832 939 1.83e-11 62.0
MsaG038158 MtrunA17_Chr1g0181821 35.345 116 68 4 58 172 235 344 1.84e-11 61.6
MsaG038158 MtrunA17_Chr1g0206221 34.409 93 54 4 82 173 8 94 1.87e-11 59.3
MsaG038158 MtrunA17_Chr1g0200911 36.842 114 68 4 64 177 470 579 1.88e-11 61.6
MsaG038158 MtrunA17_Chr5g0418011 32.203 118 72 3 64 178 181 293 2.19e-11 61.2
MsaG038158 MtrunA17_Chr8g0356041 29.032 186 106 8 6 179 179 350 2.23e-11 61.2
MsaG038158 MtrunA17_Chr2g0299041 33.913 115 71 3 58 172 272 381 2.30e-11 61.2
MsaG038158 MtrunA17_Chr2g0314841 33.333 120 74 3 58 177 820 933 2.49e-11 61.6
MsaG038158 MtrunA17_Chr2g0314821 33.333 120 74 3 58 177 823 936 2.49e-11 61.6
MsaG038158 MtrunA17_Chr2g0315081 35.000 120 72 4 58 177 813 926 2.65e-11 61.2
MsaG038158 MtrunA17_Chr3g0106131 37.121 132 61 6 59 177 668 790 2.70e-11 61.2
MsaG038158 MtrunA17_Chr5g0394011 35.455 110 65 4 64 172 517 621 2.93e-11 61.2
MsaG038158 MtrunA17_Chr2g0315061 35.833 120 71 4 58 177 196 309 3.22e-11 60.8
MsaG038158 MtrunA17_Chr2g0293081 42.000 100 53 3 80 179 575 669 3.37e-11 61.2
MsaG038158 MtrunA17_Chr2g0314881 35.833 120 71 4 58 177 388 501 3.46e-11 60.8
MsaG038158 MtrunA17_Chr5g0445251 33.621 116 61 4 64 179 88 187 3.96e-11 59.7
MsaG038158 MtrunA17_Chr8g0358911 32.203 118 68 4 58 172 205 313 4.17e-11 60.5
MsaG038158 MtrunA17_Chr3g0113951 33.333 96 56 3 84 179 641 728 4.26e-11 60.8
MsaG038158 MtrunA17_Chr4g0019371 35.345 116 61 3 64 178 836 938 4.45e-11 60.8
MsaG038158 MtrunA17_Chr2g0301061 33.929 112 69 4 67 177 86 193 4.61e-11 58.9
MsaG038158 MtrunA17_Chr2g0293071 41.000 100 54 3 80 179 238 332 5.44e-11 60.1
MsaG038158 MtrunA17_Chr4g0012581 34.615 104 59 4 82 179 5 105 8.46e-11 57.0
MsaG038158 MtrunA17_Chr7g0237391 33.594 128 68 5 59 177 671 790 8.70e-11 59.7
MsaG038158 MtrunA17_Chr3g0112111 37.410 139 68 6 39 177 501 620 8.78e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG038158 AT1G67510.1 71.942 139 34 1 46 179 581 719 1.05e-61 203
MsaG038158 AT3G57830.3 54.167 120 50 2 61 179 544 659 2.90e-33 124
MsaG038158 AT3G57830.1 54.167 120 50 2 61 179 544 659 2.90e-33 124
MsaG038158 AT2G01210.1 45.133 113 57 2 67 179 604 711 1.83e-27 108
MsaG038158 AT2G42290.1 49.123 114 54 2 67 179 535 645 2.53e-26 105
MsaG038158 AT1G25320.1 39.474 114 64 2 67 179 590 699 8.49e-23 95.1
MsaG038158 AT1G66830.1 38.462 117 64 1 63 179 573 681 2.41e-22 93.6
MsaG038158 AT5G05160.1 39.669 121 71 2 59 179 498 616 2.33e-20 87.8
MsaG038158 AT5G58300.3 39.316 117 66 3 63 179 518 629 5.03e-17 78.2
MsaG038158 AT5G58300.1 39.316 117 66 3 63 179 518 629 5.03e-17 78.2
MsaG038158 AT5G58300.2 39.316 117 66 3 63 179 518 629 5.03e-17 78.2
MsaG038158 AT3G02880.1 35.878 131 77 5 51 179 490 615 8.13e-17 77.8
MsaG038158 AT3G08680.1 38.136 118 67 4 63 179 502 614 8.32e-17 77.8
MsaG038158 AT3G08680.2 38.136 118 67 4 63 179 502 614 8.32e-17 77.8
MsaG038158 AT1G68400.1 36.000 125 77 3 55 179 515 636 1.28e-16 77.0
MsaG038158 AT5G16590.1 37.398 123 71 4 58 179 496 613 2.08e-16 76.6
MsaG038158 AT2G36570.1 37.984 129 66 3 63 179 519 645 3.72e-16 75.9
MsaG038158 AT1G48480.1 39.831 118 65 4 63 179 530 642 4.20e-16 75.5
MsaG038158 AT3G13065.1 41.739 115 58 4 67 179 579 686 1.69e-15 73.9
MsaG038158 AT3G17840.1 33.721 172 95 7 13 179 481 638 2.91e-15 73.2
MsaG038158 AT4G28650.1 39.623 106 59 3 67 172 872 972 6.74e-15 72.4
MsaG038158 AT2G26730.1 37.600 125 73 3 55 179 500 619 1.38e-14 71.2
MsaG038158 AT4G21410.3 33.065 124 78 4 50 173 510 628 1.47e-14 71.2
MsaG038158 AT4G23740.1 36.752 117 69 3 63 179 497 608 1.58e-14 71.2
MsaG038158 AT4G23740.2 36.752 117 69 3 63 179 497 608 1.58e-14 71.2
MsaG038158 AT4G21410.1 33.065 124 78 4 50 173 385 503 1.96e-14 70.9
MsaG038158 AT3G28040.1 34.932 146 83 5 40 179 865 1004 4.20e-14 70.1
MsaG038158 AT4G22130.1 40.650 123 66 5 58 179 556 672 4.62e-14 69.7
MsaG038158 AT4G22130.2 40.650 123 66 5 58 179 415 531 4.89e-14 69.7
MsaG038158 AT3G09010.1 39.669 121 66 4 58 178 205 318 1.10e-13 68.6
MsaG038158 AT1G09970.2 34.211 114 69 3 64 177 846 953 2.21e-13 67.8
MsaG038158 AT5G53320.1 33.094 139 80 3 41 179 444 569 2.53e-13 67.4
MsaG038158 AT4G00970.1 33.333 138 80 5 42 172 482 614 2.61e-13 67.4
MsaG038158 AT4G28490.1 39.474 114 58 5 67 179 864 967 2.79e-13 67.4
MsaG038158 AT1G09970.1 35.088 114 67 4 64 177 846 952 3.70e-13 67.4
MsaG038158 AT3G19700.1 38.136 118 64 4 64 179 856 966 3.93e-13 67.0
MsaG038158 AT5G49660.1 39.091 110 58 4 64 172 828 929 4.14e-13 67.0
MsaG038158 AT5G41680.1 36.134 119 71 4 61 179 240 353 4.62e-13 66.6
MsaG038158 AT1G17230.2 38.525 122 67 4 53 172 953 1068 5.21e-13 66.6
MsaG038158 AT5G41680.2 36.134 119 71 4 61 179 214 327 5.30e-13 66.2
MsaG038158 AT1G17230.1 38.525 122 67 4 53 172 953 1068 6.29e-13 66.6
MsaG038158 AT3G14840.2 40.000 120 66 4 58 177 831 944 6.93e-13 66.2
MsaG038158 AT1G29720.1 36.667 120 70 4 58 177 830 943 8.47e-13 66.2
MsaG038158 AT1G53730.2 35.537 121 74 3 49 169 565 681 1.11e-12 65.9
MsaG038158 AT1G78530.1 40.171 117 64 4 64 179 236 347 1.15e-12 65.5
MsaG038158 AT5G63930.2 36.066 122 70 4 53 172 895 1010 1.23e-12 65.9
MsaG038158 AT1G72460.1 34.711 121 74 3 59 176 512 630 1.26e-12 65.5
MsaG038158 AT5G63930.1 36.066 122 70 4 53 172 959 1074 1.33e-12 65.5
MsaG038158 AT4G21400.1 32.759 116 73 4 58 173 522 632 1.63e-12 65.1
MsaG038158 AT4G21400.2 32.759 116 73 4 58 173 510 620 1.67e-12 65.1
MsaG038158 AT4G21400.7 32.759 116 73 4 58 173 512 622 1.84e-12 65.1
MsaG038158 AT1G12460.1 35.878 131 74 4 53 179 752 876 2.08e-12 65.1
MsaG038158 AT4G21400.8 32.759 116 73 4 58 173 411 521 2.13e-12 64.7
MsaG038158 AT1G12460.2 35.878 131 74 4 53 179 613 737 2.29e-12 64.7
MsaG038158 AT1G07650.4 35.833 120 71 4 58 177 625 738 2.73e-12 64.7
MsaG038158 AT1G07650.3 35.833 120 71 4 58 177 812 925 2.81e-12 64.7
MsaG038158 AT3G14350.3 35.537 121 73 3 49 169 540 655 2.81e-12 64.7
MsaG038158 AT1G78980.1 37.008 127 70 5 55 179 557 675 2.85e-12 64.7
MsaG038158 AT1G07650.2 35.833 120 71 4 58 177 844 957 2.90e-12 64.7
MsaG038158 AT3G14350.1 35.537 121 73 3 49 169 568 683 2.94e-12 64.7
MsaG038158 AT2G28250.2 38.462 117 67 4 64 179 383 495 2.96e-12 64.3
MsaG038158 AT2G28250.5 38.462 117 67 4 64 179 383 495 2.96e-12 64.3
MsaG038158 AT2G28250.4 38.462 117 67 4 64 179 383 495 2.96e-12 64.3
MsaG038158 AT2G28250.1 38.462 117 67 4 64 179 383 495 2.96e-12 64.3
MsaG038158 AT2G28250.6 38.462 117 67 4 64 179 383 495 2.96e-12 64.3
MsaG038158 AT2G28250.3 38.462 117 67 4 64 179 383 495 2.96e-12 64.3
MsaG038158 AT1G07650.1 35.833 120 71 4 58 177 838 951 3.01e-12 64.7
MsaG038158 AT3G14350.2 35.537 121 73 3 49 169 531 646 3.12e-12 64.3
MsaG038158 AT1G76360.1 42.017 119 54 6 64 177 336 444 3.54e-12 64.3
MsaG038158 AT2G33170.2 35.772 123 70 4 53 172 979 1095 3.62e-12 64.3
MsaG038158 AT2G33170.1 35.772 123 70 4 53 172 979 1095 3.62e-12 64.3
MsaG038158 AT1G54820.1 36.842 114 65 4 64 176 321 428 3.93e-12 63.9
MsaG038158 AT5G67280.1 36.522 115 59 4 67 179 642 744 3.99e-12 64.3
MsaG038158 AT1G53430.1 37.500 120 69 4 58 177 828 941 4.39e-12 63.9
MsaG038158 AT1G53430.2 37.500 120 69 4 58 177 787 900 4.41e-12 63.9
MsaG038158 AT4G00960.2 33.333 117 73 3 56 172 121 232 4.52e-12 63.2
MsaG038158 AT3G58690.1 35.833 120 70 4 58 176 250 363 4.69e-12 63.5
MsaG038158 AT4G00960.3 33.333 117 73 3 56 172 128 239 5.22e-12 63.2
MsaG038158 AT1G53730.1 34.711 121 74 3 49 169 565 680 5.53e-12 63.9
MsaG038158 AT4G20140.1 36.207 116 65 5 67 179 1129 1238 7.79e-12 63.5
MsaG038158 AT4G00960.1 33.333 117 73 3 56 172 215 326 9.32e-12 62.8
MsaG038158 AT1G53440.1 36.667 120 70 4 58 177 826 939 9.32e-12 63.2
MsaG038158 AT2G25790.1 34.234 111 69 4 67 177 834 940 1.31e-11 62.8
MsaG038158 AT1G17910.1 38.000 100 58 3 80 179 633 728 1.68e-11 62.4
MsaG038158 AT4G23180.1 33.898 118 66 5 58 172 507 615 1.89e-11 62.0
MsaG038158 AT1G10620.1 38.400 125 65 6 58 177 527 644 2.18e-11 62.0
MsaG038158 AT4G39400.1 41.667 96 49 3 78 172 1062 1151 2.76e-11 61.6
MsaG038158 AT1G64210.1 38.136 118 69 4 64 179 466 581 2.95e-11 61.6
MsaG038158 AT5G65240.2 36.667 120 72 4 58 177 444 559 3.22e-11 61.6
MsaG038158 AT1G34210.1 36.842 114 68 4 64 177 471 580 3.56e-11 61.2
MsaG038158 AT1G34210.2 36.842 114 68 4 64 177 471 580 3.56e-11 61.2
MsaG038158 AT5G65240.1 36.667 120 72 4 58 177 444 559 3.67e-11 61.2
MsaG038158 AT4G37250.1 36.842 114 60 3 67 179 650 752 4.39e-11 61.2
MsaG038158 AT5G62710.1 37.391 115 65 4 64 178 477 584 6.62e-11 60.5
MsaG038158 AT5G62710.2 37.391 115 65 4 64 178 443 550 6.99e-11 60.5
MsaG038158 AT4G36180.1 36.508 126 63 4 58 177 1001 1115 7.32e-11 60.5
MsaG038158 AT4G23220.1 34.545 110 67 4 64 173 501 605 8.01e-11 60.5

Find 49 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCCCTCATTTCTGATTT+TGG 0.097347 7:+72191966 MsaT038158.1:CDS
CACAGCTAGTACTTCTTTCT+TGG 0.195996 7:-72192325 None:intergenic
GGGTCTGCAGCCTGGTACTT+TGG 0.289647 7:-72192109 None:intergenic
GGATCAACCATTTCAGATAA+AGG 0.313149 7:-72192279 None:intergenic
CAGCCTGGTACTTTGGCTTC+AGG 0.318821 7:-72192102 None:intergenic
TTCAGGAGCTTTATAGTTGT+TGG 0.335378 7:-72192085 None:intergenic
AGAAAGCCCTTTATCTGAAA+TGG 0.347332 7:+72192272 MsaT038158.1:CDS
GTCTGTGTCGAGGAGGATAT+TGG 0.349895 7:-72191940 None:intergenic
AAATGGGATGTATATTCATT+TGG 0.354127 7:+72192138 MsaT038158.1:CDS
TTCATTCTAGGCCTGACCTC+AGG 0.356551 7:-72192381 None:intergenic
GATGCTCCTGGAGAAGAATC+TGG 0.359882 7:-72192195 None:intergenic
GATCAACCATTTCAGATAAA+GGG 0.397701 7:-72192278 None:intergenic
CTGAGGGAGACCCTGAGGTC+AGG 0.443879 7:+72192370 MsaT038158.1:CDS
TTTACCCACCTTACCAAGTC+AGG 0.452950 7:-72192234 None:intergenic
ACCCATAAAACCGCCGGTCG+AGG 0.466588 7:-72192022 None:intergenic
GGAGGATATTGGAGGGTTTG+AGG 0.466855 7:-72191929 None:intergenic
GTTTGTGACGACTTCATGTA+AGG 0.474654 7:-72192054 None:intergenic
AAGTCCCCAGATTCTTCTCC+AGG 0.475791 7:+72192189 MsaT038158.1:CDS
TCGACAGAAGTCGATGCTCC+TGG 0.492231 7:-72192207 None:intergenic
GCTCCTGAAGCCAAAGTACC+AGG 0.492781 7:+72192099 MsaT038158.1:CDS
ATGCTCCTGGAGAAGAATCT+GGG 0.495436 7:-72192194 None:intergenic
TCATTCTAGGCCTGACCTCA+GGG 0.496811 7:-72192380 None:intergenic
TTGGTAAGGTGGGTAAAGAA+AGG 0.512436 7:+72192240 MsaT038158.1:CDS
AGTCCAAGAAAATTTGTTCA+CGG 0.512967 7:+72191903 MsaT038158.1:CDS
TGGTAAGGTGGGTAAAGAAA+GGG 0.514647 7:+72192241 MsaT038158.1:CDS
TGAATTTCTTGAAGAAGTGA+TGG 0.515957 7:-72192300 None:intergenic
TCGAAGTACCTGACTTGGTA+AGG 0.528645 7:+72192226 MsaT038158.1:CDS
TAAGACCAAAATCAGAAATG+AGG 0.531899 7:-72191971 None:intergenic
CACCGCAACAATCCCTCGAC+CGG 0.542170 7:+72192009 MsaT038158.1:CDS
CAAAATCAGAAATGAGGGGT+TGG 0.544489 7:-72191965 None:intergenic
AAGACCAAAATCAGAAATGA+GGG 0.548585 7:-72191970 None:intergenic
CCCATAAAACCGCCGGTCGA+GGG 0.552375 7:-72192021 None:intergenic
GTTGCGGTGATGCTTATTAG+CGG 0.573651 7:-72191995 None:intergenic
CGCAACAATCCCTCGACCGG+CGG 0.588867 7:+72192012 MsaT038158.1:CDS
GTAGCGCTGTCATGCACTGA+GGG 0.591214 7:+72192354 MsaT038158.1:CDS
TTCTGTCGAAGTACCTGACT+TGG 0.593631 7:+72192221 MsaT038158.1:CDS
AGCTCCACCCATAAAACCGC+CGG 0.603177 7:-72192028 None:intergenic
AAGTACCTGACTTGGTAAGG+TGG 0.612609 7:+72192229 MsaT038158.1:CDS
TGTGTCGAGGAGGATATTGG+AGG 0.624469 7:-72191937 None:intergenic
GTGTCGAGGAGGATATTGGA+GGG 0.632235 7:-72191936 None:intergenic
AGTACCTGACTTGGTAAGGT+GGG 0.638513 7:+72192230 MsaT038158.1:CDS
TGCTCCTGGAGAAGAATCTG+GGG 0.642743 7:-72192193 None:intergenic
TCTTTCAAGATTGTCAGACA+CGG 0.658215 7:-72192406 None:intergenic
GTTGGAAGTCTGTGTCGAGG+AGG 0.669779 7:-72191947 None:intergenic
CGCCGGTCGAGGGATTGTTG+CGG 0.682046 7:-72192011 None:intergenic
GGGGTTGGAAGTCTGTGTCG+AGG 0.688135 7:-72191950 None:intergenic
TGTAGCGCTGTCATGCACTG+AGG 0.692318 7:+72192353 MsaT038158.1:CDS
AGACCAAAATCAGAAATGAG+GGG 0.693537 7:-72191969 None:intergenic
ATGCACTGAGGGAGACCCTG+AGG 0.694195 7:+72192365 MsaT038158.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 72191895 72192434 72191895 ID=MsaG038158
Chr7 mRNA 72191895 72192434 72191895 ID=MsaT038158.1;Parent=MsaG038158
Chr7 exon 72191895 72192434 72191895 ID=MsaT038158.1.exon1;Parent=MsaT038158.1
Chr7 CDS 72191895 72192434 72191895 ID=cds.MsaT038158.1;Parent=MsaT038158.1
Gene Sequence

>MsaT038158.1

ATGAATGCAGTCCAAGAAAATTTGTTCACGGCGACCTCAAACCCTCCAATATCCTCCTCGACACAGACTTCCAACCCCTCATTTCTGATTTTGGTCTTAACCGCTAATAAGCATCACCGCAACAATCCCTCGACCGGCGGTTTTATGGGTGGAGCTCTTCCTTACATGAAGTCGTCACAAACAGAACGAACCAACAACTATAAAGCTCCTGAAGCCAAAGTACCAGGCTGCAGACCCACCCAAAAATGGGATGTATATTCATTTGGAGTTGTTTTACTTGAATTGCTAACTGGTAAGTCCCCAGATTCTTCTCCAGGAGCATCGACTTCTGTCGAAGTACCTGACTTGGTAAGGTGGGTAAAGAAAGGGTTTGAACAAGAAAGCCCTTTATCTGAAATGGTTGATCCATCACTTCTTCAAGAAATTCATGCCAAGAAAGAAGTACTAGCTGTGTTTCATGTAGCGCTGTCATGCACTGAGGGAGACCCTGAGGTCAGGCCTAGAATGAAAACCGTGTCTGACAATCTTGAAAGAATTTGA
Protein sequence

>MsaT038158.1

MNAVQENLFTATSNPPISSSTQTSNPSFLILVLTANKHHRNNPSTGGFMGGALPYMKSSQTERTNNYKAPEAKVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSPGASTSVEVPDLVRWVKKGFEQESPLSEMVDPSLLQEIHAKKEVLAVFHVALSCTEGDPEVRPRMKTVSDNLERI*