AlfalfaGEDB | MsaG038201

M. sativa ssp. caerulea / MsaG038201

KEGG: K13424
GO: -
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038201	XP_024625868.2	95.421	546	22	2	1	544	1	545	0.0	1031

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038201	sp\|Q6B6R4\|WRK24_ORYSI	50.255	392	160	10	64	437	75	449	2.67e-113	350

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038201	tr\|B3U398\|B3U398_MEDTR	95.421	546	22	2	1	544	1	545	0.0	1031

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TFs/TRs:

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Gene ID	Type	Classification
MsaG038201	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038201	MtrunA17_Chr7g0243891	95.421	546	22	2	1	544	1	545	0.0	1031
MsaG038201	MtrunA17_Chr4g0004911	56.653	496	146	16	57	540	51	489	4.73e-158	460
MsaG038201	MtrunA17_Chr5g0432161	47.977	519	202	16	61	540	92	581	2.76e-127	384
MsaG038201	MtrunA17_Chr3g0106491	45.703	512	197	18	50	541	58	508	8.43e-118	357
MsaG038201	MtrunA17_Chr5g0445311	40.092	434	205	11	32	438	24	429	3.95e-86	276
MsaG038201	MtrunA17_Chr3g0101131	40.169	473	182	12	29	435	40	477	1.37e-85	276
MsaG038201	MtrunA17_Chr3g0079691	39.264	489	208	15	33	443	88	565	5.60e-81	267
MsaG038201	MtrunA17_Chr5g0418191	53.386	251	84	4	207	435	143	382	1.47e-80	258
MsaG038201	MtrunA17_Chr5g0418191	50.649	77	35	2	206	281	311	385	5.05e-15	77.4
MsaG038201	MtrunA17_Chr7g0218081	40.132	456	181	14	37	461	95	489	1.12e-79	259

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038201	AT2G38470.1	52.762	362	136	7	201	540	170	518	1.41e-107	332
MsaG038201	AT2G03340.1	55.823	249	94	4	214	451	249	492	2.06e-83	269
MsaG038201	AT5G07100.1	43.415	410	115	12	34	442	10	303	3.31e-82	259
MsaG038201	AT2G30250.1	43.237	414	153	10	35	434	44	389	4.66e-81	259
MsaG038201	AT2G30250.1	55.385	65	28	1	216	279	329	393	7.30e-15	77.0
MsaG038201	AT1G13960.2	56.432	241	83	4	214	432	75	315	1.46e-80	256
MsaG038201	AT1G13960.1	56.432	241	83	4	214	432	228	468	6.19e-80	259
MsaG038201	AT4G26640.2	37.995	429	229	11	36	442	37	450	6.20e-78	256
MsaG038201	AT5G07100.2	57.391	230	55	5	214	442	23	210	1.13e-77	244
MsaG038201	AT5G07100.4	57.391	230	55	5	214	442	23	210	1.13e-77	244

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Find 109 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGGTGAAGATGAAAG+AGG	0.628532	7:+72759306	None:intergenic
AAAGGCCAAGGATGAGAGGA+AGG	0.617819	7:-72756728	MsaT038201.1:CDS
AAAGTCGAGAGGGATTTAGA+TGG	0.494156	7:-72757896	MsaT038201.1:CDS
AAATCAGGAGTCATTTCCAC+AGG	0.615699	7:-72756848	MsaT038201.1:CDS
AAATCAGGCTTAGTTTGAGT+TGG	0.438194	7:+72758984	None:intergenic
AAATGACTCCTGATTTCCGT+TGG	0.577554	7:+72756855	None:intergenic
AAATGAGGGCTATTGTGCCT+CGG	0.599243	7:-72757504	MsaT038201.1:CDS
AACAGAAATTCTCTGAACAA+CGG	0.654912	7:-72756973	MsaT038201.1:CDS
AACTGGAACAAGAACAGTTT+AGG	0.396344	7:-72759068	MsaT038201.1:CDS
AAGAATAGCTCTGAGTTGAT+TGG	0.464332	7:+72758134	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	72756687	72759463	72756687	ID=MsaG038201
Chr7	mRNA	72756687	72759463	72756687	ID=MsaT038201.1;Parent=MsaG038201
Chr7	exon	72756687	72757143	72756687	ID=MsaT038201.1.exon5;Parent=MsaT038201.1
Chr7	CDS	72756687	72757143	72756687	ID=cds.MsaT038201.1;Parent=MsaT038201.1
Chr7	exon	72757380	72757541	72757380	ID=MsaT038201.1.exon4;Parent=MsaT038201.1
Chr7	CDS	72757380	72757541	72757380	ID=cds.MsaT038201.1;Parent=MsaT038201.1
Chr7	exon	72757650	72758248	72757650	ID=MsaT038201.1.exon3;Parent=MsaT038201.1
Chr7	CDS	72757650	72758248	72757650	ID=cds.MsaT038201.1;Parent=MsaT038201.1
Chr7	exon	72758950	72759135	72758950	ID=MsaT038201.1.exon2;Parent=MsaT038201.1
Chr7	CDS	72758950	72759135	72758950	ID=cds.MsaT038201.1;Parent=MsaT038201.1
Chr7	exon	72759233	72759463	72759233	ID=MsaT038201.1.exon1;Parent=MsaT038201.1
Chr7	CDS	72759233	72759463	72759233	ID=cds.MsaT038201.1;Parent=MsaT038201.1

Gene Sequence

>MsaT038201.1

ATGACTATGGATGATCATCAATATCATAACTGGGAAACTTTTGAACTTAATACTAATAATAATCATAATCATAATAATCAAGTTGGTCCAATTAATGATGCACCTAAATTCAAAACTGTTCAACCACCTTCATTACCTCTTTCATCTTCACCATCTTTTCACTTACCATTTTCATCTACTTTTAGTCCAACTGATTTCTTGATCTCACCTTTCTTTCTTTCTTCTCCAAATGTTTTTGCTTCTCCAACTACTGAGGCTTTTGCTAACCAAAGCTTCAACTGGAACAAGAACAGTTTAGGTGAAGAAGAGCAACAAGGTGGTGATAAGAAGGATGAGAAGAATTTCTCTGATTTCTCTTTTCCAACTCAAACTAAGCCTGATTTTGTTCTTCAATCTTCCACAAACATGTTTCAACAGGAACAGGTTAAGAAACAAGATATATGGAAATTTAATGAACCTACAAAGCAAACAGATTTTTCAACCGAGAGGACGGCATCAAAATCTGAATTCCAATCAACTCAGAGCTATTCTTCAGAAATTGTACCAATCAAACCAGAAATACATAGTAATTCAGTTACTGGATCTGGTTATTATAACTACAATAATAATGCATCTCAATCTGTTAGAGAACAAAGGAGATCAGAAGATGGTTACAATTGGAGAAAATATGGACAGAAACAAGTGAAAGGAAGCGAAAATCCGCGTAGTTATTACAAGTGCACGAATCCAAATTGCTCAATGAAGAAAAAAGTCGAGAGGGATTTAGATGGGCAGATTACTGAAATTGTATATAAGGGAACTCATAACCACCCTAAGCCTCAGTCTAATAGAAGAACAAACTCTCAACCTACTTCATCATGCACTAACTCCGGAATTTCTGATCAATCTGCGATGGATCATGTCTCCATACAAGAAGATTCTTCAGCTTCTGTGGGAGAGGAAGATTTTGAACAAACATCACAAACTAGTTATTCTGGAGGAAATGACAACGCCCTTGTACCAGAGGCGAAAAGATGGAAGGGTGATAATGAAAATGAGGGCTATTGTGCCTCGGCTAGTAGAACTGTTAAAGAACCTAGAGTTGTAGTTCAAACTACAAGTGAAATTGATATCCTTGATGATGGCTTTAGGTGGAGAAAATATGGTCAGAAAGTTGTTAAAGGAAATCCCAATGCAAGGAGCTATTACAAATGCACTGCCCCTGGCTGTAATGTGAGAAAACATGTTGAAAGAGCTGCACATGATATCAAAGCCGTGATCACAACTTACGAAGGGAAACACAACCATGACGTACCAGCAGCACGCGGTGCTGCAGGTTACAACCTGAACAGAAATTCTCTGAACAACGGCAGCATACCAGCGCCTATTAGGCCCTCAGCGGTGAACTGTTATTCCAATTCAGCAAGTTTCACCAATTCACTTTATAATAATACCGGACTTCCTGCCAACGGAAATCAGGAGTCATTTCCACAGGACATGTTGCAGGGTCATGGAAATTTCGGGTATTCATCTCTCGGAAGATCGATGGATTCATCAGCCAATCATTCACAATACTCAGATGCTGCATACTTAAAGGCCAAGGATGAGAGGAAGGACGACTCATTCCTTCAGTCATTTCTGTCAAACGACTTCTAA

Protein sequence

>MsaT038201.1

MTMDDHQYHNWETFELNTNNNHNHNNQVGPINDAPKFKTVQPPSLPLSSSPSFHLPFSSTFSPTDFLISPFFLSSPNVFASPTTEAFANQSFNWNKNSLGEEEQQGGDKKDEKNFSDFSFPTQTKPDFVLQSSTNMFQQEQVKKQDIWKFNEPTKQTDFSTERTASKSEFQSTQSYSSEIVPIKPEIHSNSVTGSGYYNYNNNASQSVREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTNPNCSMKKKVERDLDGQITEIVYKGTHNHPKPQSNRRTNSQPTSSCTNSGISDQSAMDHVSIQEDSSASVGEEDFEQTSQTSYSGGNDNALVPEAKRWKGDNENEGYCASASRTVKEPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCNVRKHVERAAHDIKAVITTYEGKHNHDVPAARGAAGYNLNRNSLNNGSIPAPIRPSAVNCYSNSASFTNSLYNNTGLPANGNQESFPQDMLQGHGNFGYSSLGRSMDSSANHSQYSDAAYLKAKDERKDDSFLQSFLSNDF*