AlfalfaGEDB | MsaG038280

M. sativa ssp. caerulea / MsaG038280

KEGG: K04454 K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038280	XP_003592558.1	63.158	228	27	3	1	171	1	228	3.61e-87	265

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038280	sp\|Q9FKK2\|AGL62_ARATH	79.310	58	11	1	5	62	3	59	9.62e-23	95.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038280	tr\|G7IAT8\|G7IAT8_MEDTR	63.158	228	27	3	1	171	1	228	1.72e-87	265

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TFs/TRs:

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Gene ID	Type	Classification
MsaG038280	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038280	MtrunA17_Chr1g0208561	63.158	228	27	3	1	171	1	228	3.32e-91	265
MsaG038280	MtrunA17_Chr3g0089141	61.404	228	31	3	1	171	1	228	2.80e-87	255
MsaG038280	MtrunA17_Chr2g0325971	61.404	228	31	3	1	171	1	228	3.66e-86	252
MsaG038280	MtrunA17_Chr1g0208581	84.821	112	17	0	60	171	117	228	5.14e-67	204
MsaG038280	MtrunA17_Chr1g0208581	85.000	60	9	0	1	60	1	60	1.17e-28	105
MsaG038280	MtrunA17_Chr1g0187361	48.936	235	45	6	1	170	1	225	2.51e-60	187
MsaG038280	MtrunA17_Chr1g0188671	48.085	235	47	6	1	170	39	263	3.11e-57	180
MsaG038280	MtrunA17_Chr5g0419601	45.532	235	53	5	1	170	1	225	4.31e-54	171
MsaG038280	MtrunA17_Chr5g0422941	45.106	235	54	5	1	170	1	225	4.18e-53	169
MsaG038280	MtrunA17_Chr2g0292791	45.249	221	54	4	1	156	1	219	3.19e-49	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038280	AT5G60440.1	79.310	58	11	1	5	62	3	59	9.78e-24	95.1
MsaG038280	AT1G01530.1	73.684	57	15	0	4	60	2	58	2.00e-22	90.5
MsaG038280	AT4G36590.1	75.000	56	14	0	5	60	3	58	6.35e-22	89.4
MsaG038280	AT1G65360.1	66.071	56	19	0	5	60	3	58	3.92e-19	81.3
MsaG038280	AT2G24840.1	67.308	52	17	0	9	60	63	114	5.24e-17	76.3
MsaG038280	AT2G42830.1	45.349	86	43	3	2	87	12	93	2.18e-14	68.9
MsaG038280	AT2G42830.2	45.349	86	43	3	2	87	12	93	2.38e-14	68.9
MsaG038280	AT3G58780.4	45.349	86	43	3	2	87	12	93	3.39e-14	68.9
MsaG038280	AT3G58780.1	45.349	86	43	3	2	87	12	93	3.47e-14	68.6
MsaG038280	AT3G58780.5	45.349	86	43	3	2	87	18	99	3.53e-14	68.6

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Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAAATACCTTTCCACT+AGG	0.624124	7:-74536248	None:intergenic
ACAAAGGGTGCAAAGCTCAC+TGG	0.517842	7:-74536195	None:intergenic
ACACCATATTATTGAAGCCG+TGG	0.594561	7:-74536727	None:intergenic
AGCAGTATCTGCACCACAAA+GGG	0.482731	7:-74536210	None:intergenic
AGGCAACGAAGGCTAAGTTT+TGG	0.466330	7:+74536447	MsaT038280.1:CDS
AGTGAGCTTTGCACCCTTTG+TGG	0.435393	7:+74536197	MsaT038280.1:CDS
ATATTATTGAAGCCGTGGTG+AGG	0.616210	7:-74536722	None:intergenic
ATGATTGAGATATATGTTTG+AGG	0.515672	7:-74536603	None:intergenic
ATTATTCAAGAAAGCTTTGG+AGG	0.484545	7:+74536511	MsaT038280.1:CDS
ATTGATCCATCAAACAAATG+AGG	0.563188	7:-74536695	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	74536080	74536751	74536080	ID=MsaG038280
Chr7	mRNA	74536080	74536751	74536080	ID=MsaT038280.1;Parent=MsaG038280
Chr7	exon	74536080	74536259	74536080	ID=MsaT038280.1.exon1;Parent=MsaT038280.1
Chr7	CDS	74536080	74536259	74536080	ID=cds.MsaT038280.1;Parent=MsaT038280.1
Chr7	exon	74536416	74536751	74536416	ID=MsaT038280.1.exon2;Parent=MsaT038280.1
Chr7	CDS	74536416	74536751	74536416	ID=cds.MsaT038280.1;Parent=MsaT038280.1

Gene Sequence

>MsaT038280.1

ATGTCGAGCGGAAAGAAAGGCCGAGGTCGCCAGAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCAAAGCGTCGCAGCAGACTCTTCAAGAAATCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATACTGCTCTCGTTGTATTCTCACCTAGTGGAAAGAAAATTGGTGATGAGTTGAGCAATTTGCGCAAGGCAACGAAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAGAAAGCTTTGGAGGAGCATAAGAAGCTTGTAATTCAGCATGCTGCAACTCGAACTCTTCCATTTTTTGTTGACAACGCTTCTTCCTCAAACATATATCTCAATCATCAGCCAAATGCTCAACAAGCTGAAATGTTGCCACCACAATTTTTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCAATGATGCCTCACCACGGCTTCAATAATATGGTGTAA

Protein sequence

>MsaT038280.1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSRLFKKSSELCTLCGADTALVVFSPSGKKIGDELSNLRKATKAKFWWACPVDGMNRDQLELFKKALEEHKKLVIQHAATRTLPFFVDNASSSNIYLNHQPNAQQAEMLPPQFFQNPMLQLQPHLFDGSMMPHHGFNNMV*