AlfalfaGEDB | MsaG038280

M. sativa ssp. caerulea / MsaG038280

KEGG: K04454 K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038280	XP_003592558.1	63.158	228	27	3	1	171	1	228	3.61e-87	265

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038280	sp\|Q9FKK2\|AGL62_ARATH	79.310	58	11	1	5	62	3	59	9.62e-23	95.1

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038280	tr\|G7IAT8\|G7IAT8_MEDTR	63.158	228	27	3	1	171	1	228	1.72e-87	265

TFs/TRs:

Gene ID	Type	Classification
MsaG038280	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038280	MtrunA17_Chr1g0208561	63.158	228	27	3	1	171	1	228	3.32e-91	265
MsaG038280	MtrunA17_Chr3g0089141	61.404	228	31	3	1	171	1	228	2.80e-87	255
MsaG038280	MtrunA17_Chr2g0325971	61.404	228	31	3	1	171	1	228	3.66e-86	252
MsaG038280	MtrunA17_Chr1g0208581	84.821	112	17	0	60	171	117	228	5.14e-67	204
MsaG038280	MtrunA17_Chr1g0208581	85.000	60	9	0	1	60	1	60	1.17e-28	105
MsaG038280	MtrunA17_Chr1g0187361	48.936	235	45	6	1	170	1	225	2.51e-60	187
MsaG038280	MtrunA17_Chr1g0188671	48.085	235	47	6	1	170	39	263	3.11e-57	180
MsaG038280	MtrunA17_Chr5g0419601	45.532	235	53	5	1	170	1	225	4.31e-54	171
MsaG038280	MtrunA17_Chr5g0422941	45.106	235	54	5	1	170	1	225	4.18e-53	169
MsaG038280	MtrunA17_Chr2g0292791	45.249	221	54	4	1	156	1	219	3.19e-49	159
MsaG038280	MtrunA17_Chr2g0317451	43.830	235	57	5	1	170	1	225	2.73e-48	156
MsaG038280	MtrunA17_Chr3g0099411	48.515	202	56	5	1	156	1	200	8.63e-48	154
MsaG038280	MtrunA17_Chr5g0422421	44.681	235	55	6	1	170	1	225	9.51e-48	155
MsaG038280	MtrunA17_Chr8g0355091	42.291	227	64	5	1	162	1	225	6.12e-43	142
MsaG038280	MtrunA17_Chr2g0317481	42.291	227	64	5	1	162	1	225	1.81e-41	139
MsaG038280	MtrunA17_Chr1g0206721	66.667	105	25	2	60	156	117	219	2.40e-38	131
MsaG038280	MtrunA17_Chr1g0206721	87.097	62	7	1	1	62	1	61	9.20e-30	108
MsaG038280	MtrunA17_Chr1g0206701	58.824	119	31	3	60	170	117	225	2.54e-37	128
MsaG038280	MtrunA17_Chr1g0206701	87.097	62	7	1	1	62	1	61	1.08e-29	108
MsaG038280	MtrunA17_Chr1g0149391	62.857	105	29	2	60	156	117	219	2.52e-36	125
MsaG038280	MtrunA17_Chr1g0149391	83.871	62	9	1	1	62	1	61	2.21e-29	108
MsaG038280	MtrunA17_Chr1g0206691	56.303	119	34	3	60	170	100	208	4.10e-35	122
MsaG038280	MtrunA17_Chr1g0206691	84.444	45	6	1	18	62	1	44	3.26e-18	78.6
MsaG038280	MtrunA17_Chr2g0300441	57.143	119	33	3	60	170	117	225	6.68e-34	119
MsaG038280	MtrunA17_Chr2g0300441	80.000	60	12	0	1	60	1	60	5.64e-25	96.7
MsaG038280	MtrunA17_Chr3g0099421	59.048	105	33	2	60	156	142	244	1.88e-32	116
MsaG038280	MtrunA17_Chr3g0099421	82.258	62	10	1	1	62	26	86	2.00e-28	105
MsaG038280	MtrunA17_Chr7g0238991	50.355	141	52	3	38	170	107	237	5.94e-32	115
MsaG038280	MtrunA17_Chr2g0300421	88.333	60	7	0	1	60	1	60	2.14e-30	108
MsaG038280	MtrunA17_Chr1g0206991	82.258	62	10	1	1	62	1	61	1.12e-28	104
MsaG038280	MtrunA17_Chr1g0206991	57.576	66	20	1	60	117	117	182	1.06e-15	70.9
MsaG038280	MtrunA17_Chr3g0089151	81.667	60	11	0	1	60	1	60	8.77e-27	98.2
MsaG038280	MtrunA17_Chr8g0379021	64.286	56	20	0	5	60	8	63	2.96e-19	80.1
MsaG038280	MtrunA17_Chr3g0111841	80.435	46	9	0	15	60	2	47	2.99e-19	77.4
MsaG038280	MtrunA17_Chr3g0085241	65.517	58	20	0	3	60	35	92	2.86e-18	79.0
MsaG038280	MtrunA17_Chr3g0119901	69.231	52	16	0	9	60	9	60	3.56e-18	78.2
MsaG038280	MtrunA17_Chr2g0333981	60.714	56	22	0	5	60	8	63	3.11e-16	72.4
MsaG038280	MtrunA17_Chr1g0187351	79.070	43	9	0	18	60	1	43	4.52e-16	68.9
MsaG038280	MtrunA17_Chr3g0097101	45.679	81	43	1	3	83	11	90	5.01e-15	70.5
MsaG038280	MtrunA17_Chr2g0284911	47.945	73	37	1	9	81	17	88	1.73e-14	68.9
MsaG038280	MtrunA17_Chr3g0077501	45.946	74	39	1	9	82	2	74	5.62e-14	67.0
MsaG038280	MtrunA17_Chr1g0173161	55.769	52	23	0	9	60	2	53	6.01e-14	63.9
MsaG038280	MtrunA17_Chr8g0380021	46.575	73	38	1	9	81	18	89	6.31e-14	67.4
MsaG038280	MtrunA17_Chr2g0308251	55.769	52	23	0	9	60	2	53	8.85e-14	63.5
MsaG038280	MtrunA17_Chr8g0376821	55.769	52	23	0	9	60	2	53	1.05e-13	65.5
MsaG038280	MtrunA17_Chr7g0246381	53.846	52	24	0	9	60	2	53	1.48e-13	62.4
MsaG038280	MtrunA17_Chr1g0169761	55.769	52	23	0	9	60	2	53	1.78e-13	65.1
MsaG038280	MtrunA17_Chr5g0425191	55.769	52	23	0	9	60	2	53	1.78e-13	63.2
MsaG038280	MtrunA17_Chr1g0175601	57.143	49	21	0	9	57	2	50	1.98e-13	65.1
MsaG038280	MtrunA17_Chr4g0049901	62.745	51	19	0	10	60	29	79	2.79e-13	65.5
MsaG038280	MtrunA17_Chr6g0474371	55.556	54	22	1	7	60	2	53	2.82e-13	64.7
MsaG038280	MtrunA17_Chr5g0412271	55.769	52	23	0	9	60	2	53	3.25e-13	65.1
MsaG038280	MtrunA17_Chr5g0412461	55.000	60	25	1	10	69	3	60	3.63e-13	65.1
MsaG038280	MtrunA17_Chr4g0057151	60.784	51	20	0	10	60	3	53	3.81e-13	64.7
MsaG038280	MtrunA17_Chr8g0377561	51.923	52	25	0	9	60	2	53	4.42e-13	62.0
MsaG038280	MtrunA17_Chr4g0044071	53.846	52	24	0	9	60	2	53	4.90e-13	62.4
MsaG038280	MtrunA17_Chr1g0159661	39.506	81	40	1	9	80	2	82	5.61e-13	63.5
MsaG038280	MtrunA17_Chr1g0180591	55.102	49	22	0	9	57	2	50	7.30e-13	63.5
MsaG038280	MtrunA17_Chr3g0134451	55.769	52	23	0	9	60	2	53	7.54e-13	65.1
MsaG038280	MtrunA17_Chr1g0164791	55.769	52	23	0	9	60	2	53	7.71e-13	64.3
MsaG038280	MtrunA17_Chr4g0018951	33.129	163	54	3	5	117	8	165	8.10e-13	63.2
MsaG038280	MtrunA17_Chr1g0175611	55.102	49	22	0	9	57	2	50	8.62e-13	63.2
MsaG038280	MtrunA17_Chr5g0427401	55.769	52	23	0	9	60	2	53	1.08e-12	63.5
MsaG038280	MtrunA17_Chr4g0074101	53.846	52	24	0	9	60	2	53	1.11e-12	63.2
MsaG038280	MtrunA17_Chr4g0020221	55.769	52	23	0	9	60	2	53	1.40e-12	63.9
MsaG038280	MtrunA17_Chr8g0357771	55.769	52	23	0	9	60	2	53	1.45e-12	62.8
MsaG038280	MtrunA17_Chr8g0351051	53.846	52	24	0	9	60	2	53	1.74e-12	63.5
MsaG038280	MtrunA17_Chr4g0061691	53.704	54	23	1	7	60	2	53	1.92e-12	63.2
MsaG038280	MtrunA17_Chr4g0061671	51.852	54	24	1	7	60	2	53	2.26e-12	62.0
MsaG038280	MtrunA17_Chr7g0220111	53.704	54	23	1	7	60	2	53	2.68e-12	62.8
MsaG038280	MtrunA17_Chr5g0420091	51.923	52	25	0	9	60	2	53	3.43e-12	62.0
MsaG038280	MtrunA17_Chr5g0420081	50.000	52	26	0	9	60	2	53	3.76e-12	62.4
MsaG038280	MtrunA17_Chr8g0366231	51.923	52	25	0	9	60	2	53	3.85e-12	62.4
MsaG038280	MtrunA17_Chr3g0122251	53.846	52	24	0	9	60	2	53	4.01e-12	62.4
MsaG038280	MtrunA17_Chr3g0111831	63.830	47	16	1	16	62	11	56	4.84e-12	58.9
MsaG038280	MtrunA17_Chr3g0125241	38.272	81	41	1	9	80	27	107	5.56e-12	61.6
MsaG038280	MtrunA17_Chr8g0351041	54.902	51	23	0	10	60	3	53	6.06e-12	60.5
MsaG038280	MtrunA17_Chr6g0455511	51.923	52	25	0	9	60	2	53	6.35e-12	62.0
MsaG038280	MtrunA17_Chr1g0204111	45.205	73	39	1	9	81	18	89	6.91e-12	62.0
MsaG038280	MtrunA17_Chr4g0052081	56.863	51	22	0	9	59	2	52	7.07e-12	60.8
MsaG038280	MtrunA17_Chr7g0246431	54.902	51	23	0	10	60	3	53	7.68e-12	61.2
MsaG038280	MtrunA17_Chr2g0279821	51.923	52	25	0	9	60	2	53	7.95e-12	61.6
MsaG038280	MtrunA17_Chr3g0142191	50.000	52	26	0	9	60	2	53	9.30e-12	61.2
MsaG038280	MtrunA17_Chr8g0351031	54.902	51	23	0	10	60	3	53	1.16e-11	60.8
MsaG038280	MtrunA17_Chr4g0060841	40.860	93	50	3	9	97	2	93	1.26e-11	61.6
MsaG038280	MtrunA17_Chr4g0052061	53.846	52	24	0	9	60	2	53	1.41e-11	59.7
MsaG038280	MtrunA17_Chr5g0427921	46.154	52	28	0	9	60	2	53	2.99e-11	56.2
MsaG038280	MtrunA17_Chr8g0356071	53.846	52	24	0	9	60	2	53	5.18e-11	58.2
MsaG038280	MtrunA17_Chr5g0404951	51.923	52	25	0	9	60	2	53	8.79e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038280	AT5G60440.1	79.310	58	11	1	5	62	3	59	9.78e-24	95.1
MsaG038280	AT1G01530.1	73.684	57	15	0	4	60	2	58	2.00e-22	90.5
MsaG038280	AT4G36590.1	75.000	56	14	0	5	60	3	58	6.35e-22	89.4
MsaG038280	AT1G65360.1	66.071	56	19	0	5	60	3	58	3.92e-19	81.3
MsaG038280	AT2G24840.1	67.308	52	17	0	9	60	63	114	5.24e-17	76.3
MsaG038280	AT2G42830.1	45.349	86	43	3	2	87	12	93	2.18e-14	68.9
MsaG038280	AT2G42830.2	45.349	86	43	3	2	87	12	93	2.38e-14	68.9
MsaG038280	AT3G58780.4	45.349	86	43	3	2	87	12	93	3.39e-14	68.9
MsaG038280	AT3G58780.1	45.349	86	43	3	2	87	12	93	3.47e-14	68.6
MsaG038280	AT3G58780.5	45.349	86	43	3	2	87	18	99	3.53e-14	68.6
MsaG038280	AT4G09960.1	45.570	79	41	2	9	87	2	78	4.66e-14	67.8
MsaG038280	AT4G09960.6	45.570	79	41	2	9	87	3	79	4.67e-14	67.8
MsaG038280	AT4G09960.2	45.570	79	41	2	9	87	2	78	4.80e-14	67.8
MsaG038280	AT4G09960.5	45.570	79	41	2	9	87	12	88	5.19e-14	67.8
MsaG038280	AT3G61120.1	40.476	84	48	1	9	92	2	83	6.68e-14	67.8
MsaG038280	AT2G34440.1	59.615	52	21	0	9	60	2	53	6.85e-14	66.2
MsaG038280	AT4G09960.3	45.570	79	41	2	9	87	28	104	7.13e-14	67.8
MsaG038280	AT1G72350.1	29.870	154	77	3	9	131	43	196	1.04e-13	67.0
MsaG038280	AT2G22540.2	56.863	51	22	0	10	60	3	53	1.82e-13	66.2
MsaG038280	AT2G22540.3	55.769	52	23	0	9	60	2	53	2.52e-13	65.9
MsaG038280	AT2G22540.1	55.769	52	23	0	9	60	2	53	2.52e-13	65.9
MsaG038280	AT3G04100.1	41.558	77	35	1	2	68	7	83	3.10e-13	65.1
MsaG038280	AT3G66656.1	59.615	52	21	0	9	60	2	53	3.16e-13	64.7
MsaG038280	AT5G51870.2	60.784	51	20	0	10	60	3	53	4.21e-13	64.3
MsaG038280	AT5G13790.2	59.615	52	21	0	9	60	2	53	4.44e-13	65.9
MsaG038280	AT5G13790.1	59.615	52	21	0	9	60	2	53	4.55e-13	65.5
MsaG038280	AT3G58780.2	55.932	59	24	1	2	60	12	68	5.46e-13	65.1
MsaG038280	AT5G20240.2	41.975	81	38	1	9	80	2	82	5.62e-13	63.5
MsaG038280	AT3G58780.3	55.932	59	24	1	2	60	12	68	6.17e-13	65.5
MsaG038280	AT5G23260.1	55.357	56	25	0	5	60	14	69	7.55e-13	65.1
MsaG038280	AT4G09960.4	45.570	79	41	2	9	87	97	173	7.92e-13	65.5
MsaG038280	AT5G23260.4	55.357	56	25	0	5	60	14	69	8.31e-13	65.1
MsaG038280	AT5G20240.1	41.975	81	38	1	9	80	2	82	9.37e-13	63.9
MsaG038280	AT4G24540.1	55.769	52	23	0	9	60	2	53	9.75e-13	64.3
MsaG038280	AT5G51870.5	57.143	56	24	0	5	60	21	76	1.02e-12	63.5
MsaG038280	AT2G45650.1	55.769	52	23	0	9	60	2	53	1.05e-12	64.3
MsaG038280	AT5G51870.1	60.784	51	20	0	10	60	3	53	1.15e-12	63.5
MsaG038280	AT5G23260.3	57.692	52	22	0	9	60	2	53	1.29e-12	63.9
MsaG038280	AT1G22130.1	55.769	52	23	0	9	60	2	53	1.34e-12	64.7
MsaG038280	AT5G23260.2	57.692	52	22	0	9	60	2	53	1.43e-12	63.9
MsaG038280	AT3G57390.3	55.769	52	23	0	9	60	2	53	1.58e-12	63.5
MsaG038280	AT4G18960.1	55.769	52	23	0	9	60	18	69	1.62e-12	63.9
MsaG038280	AT4G11880.2	56.863	51	22	0	10	60	3	53	1.67e-12	62.8
MsaG038280	AT4G11880.3	56.863	51	22	0	10	60	3	53	1.67e-12	62.8
MsaG038280	AT1G77980.1	55.769	52	23	0	9	60	2	53	1.75e-12	64.3
MsaG038280	AT5G51870.3	60.784	51	20	0	10	60	13	63	1.89e-12	63.5
MsaG038280	AT5G51870.4	60.784	51	20	0	10	60	3	53	1.95e-12	63.2
MsaG038280	AT1G69120.2	55.556	54	22	1	7	60	2	53	2.48e-12	63.2
MsaG038280	AT4G11880.4	56.863	51	22	0	10	60	3	53	2.85e-12	62.8
MsaG038280	AT4G11880.1	56.863	51	22	0	10	60	3	53	2.85e-12	62.8
MsaG038280	AT2G03710.3	53.846	52	24	0	9	60	2	53	3.10e-12	62.4
MsaG038280	AT1G26310.1	53.704	54	23	1	7	60	2	53	3.30e-12	63.2
MsaG038280	AT5G60910.1	53.846	52	24	0	9	60	2	53	3.34e-12	63.2
MsaG038280	AT5G10140.2	53.846	52	24	0	9	60	2	53	3.46e-12	61.6
MsaG038280	AT3G57390.1	55.769	52	23	0	9	60	2	53	3.60e-12	63.2
MsaG038280	AT5G10140.4	53.846	52	24	0	9	60	2	53	4.37e-12	61.6
MsaG038280	AT1G69120.1	55.556	54	22	1	7	60	2	53	4.45e-12	62.8
MsaG038280	AT5G10140.1	53.846	52	24	0	9	60	2	53	4.95e-12	62.0
MsaG038280	AT1G24260.3	31.176	170	99	5	9	163	2	168	5.70e-12	62.4
MsaG038280	AT5G15800.1	51.923	52	25	0	9	60	2	53	5.98e-12	62.4
MsaG038280	AT5G10140.3	53.846	52	24	0	9	60	2	53	7.04e-12	61.2
MsaG038280	AT3G30260.1	50.000	52	26	0	9	60	2	53	7.47e-12	62.0
MsaG038280	AT1G24260.2	51.923	52	25	0	9	60	2	53	7.76e-12	62.0
MsaG038280	AT1G24260.1	51.923	52	25	0	9	60	2	53	8.09e-12	62.0
MsaG038280	AT2G03710.2	53.846	52	24	0	9	60	2	53	8.52e-12	62.0
MsaG038280	AT2G03710.1	53.846	52	24	0	9	60	2	53	8.86e-12	62.0
MsaG038280	AT5G15800.2	51.923	52	25	0	9	60	2	53	9.06e-12	62.0
MsaG038280	AT4G22950.2	56.863	51	22	0	10	60	3	53	9.40e-12	60.5
MsaG038280	AT5G62165.6	54.902	51	23	0	10	60	3	53	9.92e-12	60.1
MsaG038280	AT5G62165.9	54.902	51	23	0	10	60	3	53	9.92e-12	60.1
MsaG038280	AT5G62165.7	54.902	51	23	0	10	60	3	53	9.92e-12	60.1
MsaG038280	AT5G62165.8	54.902	51	23	0	10	60	3	53	9.92e-12	60.1
MsaG038280	AT5G62165.13	54.902	51	23	0	10	60	3	53	9.92e-12	60.1
MsaG038280	AT3G54340.1	34.579	107	58	2	9	107	2	104	1.03e-11	61.6
MsaG038280	AT5G62165.14	54.902	51	23	0	10	60	3	53	1.05e-11	58.9
MsaG038280	AT3G02310.2	51.923	52	25	0	9	60	2	53	1.13e-11	60.8
MsaG038280	AT3G57230.2	48.077	52	27	0	9	60	2	53	1.26e-11	59.7
MsaG038280	AT3G02310.1	51.923	52	25	0	9	60	2	53	1.31e-11	61.6
MsaG038280	AT5G62165.17	54.902	51	23	0	10	60	3	53	1.43e-11	59.7
MsaG038280	AT5G62165.12	54.902	51	23	0	10	60	3	53	1.43e-11	59.7
MsaG038280	AT5G62165.11	54.902	51	23	0	10	60	3	53	1.43e-11	59.7
MsaG038280	AT2G45660.2	52.941	51	24	0	10	60	3	53	1.47e-11	59.7
MsaG038280	AT4G22950.3	56.863	51	22	0	10	60	3	53	1.63e-11	60.8
MsaG038280	AT4G22950.1	56.863	51	22	0	10	60	3	53	1.63e-11	60.8
MsaG038280	AT5G51860.2	49.231	65	33	0	10	74	3	67	2.33e-11	60.1
MsaG038280	AT3G57230.1	48.077	52	27	0	9	60	2	53	2.50e-11	60.5
MsaG038280	AT3G57230.4	48.077	52	27	0	9	60	2	53	2.50e-11	60.5
MsaG038280	AT5G51860.1	49.231	65	33	0	10	74	3	67	2.75e-11	60.1
MsaG038280	AT2G14210.1	50.000	52	26	0	9	60	2	53	2.86e-11	60.5
MsaG038280	AT1G77950.3	51.923	52	25	0	9	60	2	53	3.02e-11	60.5
MsaG038280	AT1G77950.2	51.923	52	25	0	9	60	2	53	3.02e-11	60.5
MsaG038280	AT1G77950.1	51.923	52	25	0	9	60	2	53	3.02e-11	60.5
MsaG038280	AT1G77950.4	51.923	52	25	0	9	60	2	53	3.02e-11	60.5
MsaG038280	AT5G62165.10	54.902	51	23	0	10	60	3	53	3.26e-11	59.7
MsaG038280	AT5G62165.4	54.902	51	23	0	10	60	3	53	3.26e-11	59.7
MsaG038280	AT2G14210.2	50.000	52	26	0	9	60	2	53	3.35e-11	60.1
MsaG038280	AT5G62165.3	54.902	51	23	0	10	60	3	53	3.58e-11	59.7
MsaG038280	AT5G62165.1	54.902	51	23	0	10	60	3	53	3.58e-11	59.7
MsaG038280	AT5G62165.2	54.902	51	23	0	10	60	3	53	3.58e-11	59.7
MsaG038280	AT2G45660.1	52.941	51	24	0	10	60	3	53	3.91e-11	59.7
MsaG038280	AT5G55690.1	43.103	58	31	1	9	66	2	57	7.18e-11	59.7
MsaG038280	AT5G55690.2	43.103	58	31	1	9	66	2	57	7.18e-11	59.7
MsaG038280	AT5G65050.2	34.400	125	54	5	9	114	2	117	9.90e-11	58.2

Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCAAATCTGAGAAGAAAAT+TGG	0.264401	7:+74536401	MsaT038280.1:intron
TTGCAGCCTCATTTGTTTGA+TGG	0.293834	7:+74536689	MsaT038280.1:CDS
TGGTGGGCTTGTCCGGTTGA+TGG	0.317499	7:+74536467	MsaT038280.1:CDS
ATTTCAGCTTGTTGAGCATT+TGG	0.333852	7:-74536629	None:intergenic
TCACCACGGCTTCAATAATA+TGG	0.342966	7:+74536724	MsaT038280.1:CDS
TGAATTATTCAAGAAAGCTT+TGG	0.360061	7:+74536508	MsaT038280.1:CDS
GCTTTGAGAAAGTCACTTGC+AGG	0.373101	7:-74536148	None:intergenic
TCCGGTTGATGGGATGAATA+GGG	0.429925	7:+74536478	MsaT038280.1:CDS
GTCCGGTTGATGGGATGAAT+AGG	0.433236	7:+74536477	MsaT038280.1:CDS
AGTGAGCTTTGCACCCTTTG+TGG	0.435393	7:+74536197	MsaT038280.1:CDS
GGTGGGCTTGTCCGGTTGAT+GGG	0.441656	7:+74536468	MsaT038280.1:CDS
AGGCAACGAAGGCTAAGTTT+TGG	0.466330	7:+74536447	MsaT038280.1:CDS
TCCCTATTCATCCCATCAAC+CGG	0.481029	7:-74536479	None:intergenic
AGCAGTATCTGCACCACAAA+GGG	0.482731	7:-74536210	None:intergenic
ATTATTCAAGAAAGCTTTGG+AGG	0.484545	7:+74536511	MsaT038280.1:CDS
TGAGGCTGCAATTGCAACAT+AGG	0.486430	7:-74536677	None:intergenic
GCCTTTCTTTCCGCTCGACA+TGG	0.505646	7:-74536078	None:intergenic
ATGATTGAGATATATGTTTG+AGG	0.515672	7:-74536603	None:intergenic
ACAAAGGGTGCAAAGCTCAC+TGG	0.517842	7:-74536195	None:intergenic
GCCATGTCGAGCGGAAAGAA+AGG	0.520307	7:+74536077	None:intergenic
TCTCGATCTTCTGGCGACCT+CGG	0.542422	7:-74536100	None:intergenic
CAATTTGCGCAAGGCAACGA+AGG	0.559033	7:+74536436	MsaT038280.1:CDS
ATTGATCCATCAAACAAATG+AGG	0.563188	7:-74536695	None:intergenic
GAGGCTGCAATTGCAACATA+GGG	0.578323	7:-74536676	None:intergenic
CTCGTTGTATTCTCACCTAG+TGG	0.580084	7:+74536233	MsaT038280.1:CDS
ACACCATATTATTGAAGCCG+TGG	0.594561	7:-74536727	None:intergenic
TCGAGCGGAAAGAAAGGCCG+AGG	0.597603	7:+74536083	MsaT038280.1:CDS
TGTATTCTCACCTAGTGGAA+AGG	0.611194	7:+74536238	MsaT038280.1:CDS
TGAGTTGAGCAATTTGCGCA+AGG	0.614191	7:+74536427	MsaT038280.1:CDS
ATATTATTGAAGCCGTGGTG+AGG	0.616210	7:-74536722	None:intergenic
AAGGAAAATACCTTTCCACT+AGG	0.624124	7:-74536248	None:intergenic
GAGCAGTATCTGCACCACAA+AGG	0.630236	7:-74536211	None:intergenic
TGTGCGTCAGCCATGTCGAG+CGG	0.650334	7:+74536068	None:intergenic
GGATCAATGATGCCTCACCA+CGG	0.697568	7:+74536710	MsaT038280.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	74536080	74536751	74536080	ID=MsaG038280
Chr7	mRNA	74536080	74536751	74536080	ID=MsaT038280.1;Parent=MsaG038280
Chr7	exon	74536080	74536259	74536080	ID=MsaT038280.1.exon1;Parent=MsaT038280.1
Chr7	CDS	74536080	74536259	74536080	ID=cds.MsaT038280.1;Parent=MsaT038280.1
Chr7	exon	74536416	74536751	74536416	ID=MsaT038280.1.exon2;Parent=MsaT038280.1
Chr7	CDS	74536416	74536751	74536416	ID=cds.MsaT038280.1;Parent=MsaT038280.1

Gene Sequence

>MsaT038280.1

ATGTCGAGCGGAAAGAAAGGCCGAGGTCGCCAGAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCAAAGCGTCGCAGCAGACTCTTCAAGAAATCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATACTGCTCTCGTTGTATTCTCACCTAGTGGAAAGAAAATTGGTGATGAGTTGAGCAATTTGCGCAAGGCAACGAAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAGAAAGCTTTGGAGGAGCATAAGAAGCTTGTAATTCAGCATGCTGCAACTCGAACTCTTCCATTTTTTGTTGACAACGCTTCTTCCTCAAACATATATCTCAATCATCAGCCAAATGCTCAACAAGCTGAAATGTTGCCACCACAATTTTTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCAATGATGCCTCACCACGGCTTCAATAATATGGTGTAA

Protein sequence

>MsaT038280.1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSRLFKKSSELCTLCGADTALVVFSPSGKKIGDELSNLRKATKAKFWWACPVDGMNRDQLELFKKALEEHKKLVIQHAATRTLPFFVDNASSSNIYLNHQPNAQQAEMLPPQFFQNPMLQLQPHLFDGSMMPHHGFNNMV*