AlfalfaGEDB | MsaG038311

M. sativa ssp. caerulea / MsaG038311

KEGG: K04688
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008285 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038311	XP_024625957.1	96.855	477	13	1	57	531	1	477	0.0	952

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038311	sp\|Q39030\|KPK2_ARATH	65.914	487	132	9	57	528	1	468	0.0	628

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038311	tr\|A0A072U0H2\|A0A072U0H2_MEDTR	96.855	477	13	1	57	531	1	477	0.0	952

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000032	MsaG038311	0.849171	7.285301e-60	3.838499e-57
MsaG000137	MsaG038311	0.868335	1.424593e-65	1.540748e-62
MsaG000416	MsaG038311	0.806036	1.692717e-49	2.629138e-47
MsaG000455	MsaG038311	0.808875	4.258106e-50	7.077184e-48
MsaG000488	MsaG038311	0.812682	6.450401e-51	1.176498e-48
MsaG000932	MsaG038311	0.812895	5.797270e-51	1.062983e-48
MsaG001365	MsaG038311	0.816870	7.689921e-52	1.559002e-49
MsaG001374	MsaG038311	0.864200	2.874245e-64	2.630341e-61
MsaG001601	MsaG038311	0.809716	2.816626e-50	4.777128e-48
MsaG001767	MsaG038311	0.877633	1.123977e-68	1.818968e-65

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038311	MtrunA17_Chr7g0245031	96.855	477	13	1	57	531	1	477	0.0	952
MsaG038311	MtrunA17_Chr4g0059751	58.178	428	142	7	102	519	14	414	5.56e-168	482
MsaG038311	MtrunA17_Chr6g0478601	38.739	333	163	5	198	493	105	433	2.26e-73	242
MsaG038311	MtrunA17_Chr4g0018201	38.298	376	185	9	158	492	709	1078	3.51e-71	246
MsaG038311	MtrunA17_Chr5g0428981	38.857	350	170	6	158	466	713	1059	2.48e-70	244
MsaG038311	MtrunA17_Chr1g0153321	32.718	379	199	9	163	490	65	438	4.32e-64	217
MsaG038311	MtrunA17_Chr8g0369091	38.438	333	168	8	197	494	592	922	1.48e-60	215
MsaG038311	MtrunA17_Chr2g0299781	31.683	404	203	10	173	512	74	468	5.59e-59	204
MsaG038311	MtrunA17_Chr1g0167351	31.151	443	240	13	134	517	33	469	9.61e-59	204
MsaG038311	MtrunA17_Chr1g0183651	32.767	412	214	11	135	490	44	448	1.30e-58	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038311	AT3G08720.1	65.914	487	132	9	57	528	1	468	0.0	628
MsaG038311	AT3G08720.3	65.914	487	132	9	57	528	1	468	0.0	628
MsaG038311	AT3G08720.4	65.914	487	132	9	57	528	1	468	0.0	628
MsaG038311	AT3G08720.2	65.914	487	132	9	57	528	1	468	0.0	628
MsaG038311	AT3G08730.1	63.617	481	147	8	57	528	1	462	0.0	577
MsaG038311	AT3G08730.2	63.617	481	147	8	57	528	1	462	0.0	577
MsaG038311	AT5G62310.1	40.407	344	157	5	169	466	710	1051	1.46e-72	251
MsaG038311	AT3G17850.1	41.176	306	141	5	198	466	876	1179	6.19e-70	244
MsaG038311	AT1G45160.2	38.728	346	175	6	198	510	664	1005	6.38e-69	240
MsaG038311	AT1G45160.1	38.728	346	175	6	198	510	664	1005	7.63e-69	239

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Find 138 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGAGAATATCCTAA+TGG	0.409778	7:+74880419	MsaT038311.1:CDS
AAACTTACCTGAAAAGGCCC+TGG	0.603322	7:-74880229	None:intergenic
AAAGATAAGATTAAACTGCC+AGG	0.543688	7:+74881333	MsaT038311.1:CDS
AAAGCTAAACTTACCTGAAA+AGG	0.456244	7:-74880235	None:intergenic
AAATGATGAATCGAGCGAGC+TGG	0.583825	7:+74879543	MsaT038311.1:CDS
AAATGGTGGAAACCCCTTCA+AGG	0.472836	7:+74882174	MsaT038311.1:CDS
AACAACCACTGGAGCATACT+TGG	0.381181	7:+74879127	MsaT038311.1:CDS
AAGAAATTAAAGGACACAAG+TGG	0.619829	7:+74882008	MsaT038311.1:CDS
AAGAGCACCCTCACTGCTGA+TGG	0.515838	7:-74879278	None:intergenic
AAGGATGCACCAAAGCGGTT+GGG	0.513038	7:+74881965	MsaT038311.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	74879119	74882255	74879119	ID=MsaG038311
Chr7	mRNA	74879119	74882255	74879119	ID=MsaT038311.1;Parent=MsaG038311
Chr7	exon	74879119	74879286	74879119	ID=MsaT038311.1.exon1;Parent=MsaT038311.1
Chr7	CDS	74879119	74879286	74879119	ID=cds.MsaT038311.1;Parent=MsaT038311.1
Chr7	exon	74879385	74880037	74879385	ID=MsaT038311.1.exon2;Parent=MsaT038311.1
Chr7	CDS	74879385	74880037	74879385	ID=cds.MsaT038311.1;Parent=MsaT038311.1
Chr7	exon	74880172	74880243	74880172	ID=MsaT038311.1.exon3;Parent=MsaT038311.1
Chr7	CDS	74880172	74880243	74880172	ID=cds.MsaT038311.1;Parent=MsaT038311.1
Chr7	exon	74880335	74880455	74880335	ID=MsaT038311.1.exon4;Parent=MsaT038311.1
Chr7	CDS	74880335	74880455	74880335	ID=cds.MsaT038311.1;Parent=MsaT038311.1
Chr7	exon	74880559	74880732	74880559	ID=MsaT038311.1.exon5;Parent=MsaT038311.1
Chr7	CDS	74880559	74880732	74880559	ID=cds.MsaT038311.1;Parent=MsaT038311.1
Chr7	exon	74881285	74881392	74881285	ID=MsaT038311.1.exon6;Parent=MsaT038311.1
Chr7	CDS	74881285	74881392	74881285	ID=cds.MsaT038311.1;Parent=MsaT038311.1
Chr7	exon	74881956	74882255	74881956	ID=MsaT038311.1.exon7;Parent=MsaT038311.1
Chr7	CDS	74881956	74882255	74881956	ID=cds.MsaT038311.1;Parent=MsaT038311.1

Gene Sequence

>MsaT038311.1

ATGAGTTCAACAACCACTGGAGCATACTTGGTTTCCTGCTATTCGGGAAACAAGAACAACGGCCTCTTCTGCTGGATTTTGATCTGCCTGCTACCAAAATTCCTTGGAACTGCATTTGCCTTCATCAACTTCCTCCTCATTCAAGCCATTGACAGGAGTCCATCAGCAATGGTTTCCTCTCAGTTTTCTGGCATGTATAAACCATTGCTCTTTCCCGTAAACGATCCTGGCACCACAACCACCGATCACGTTGAGCTAGATTTCTCTGATGTCTTTGGTCCACTTACCGTAGAAGTCAATAACATAGATTCGACTTCTTTTGAGTCAAATGATGAATCGAGCGAGCTGGTTTACGAGGACCCAGAAGTCATTATCACCCGCTCACATTCTTTGGTTGGCCCTTCTAGTTGTATCAGCCAATCACTTAAACTCGGTAAGCTCACCATACACGAGTCCGACTCTGACAATTCTTTGGAACTAGTGGAGCGTGTCACTGAAGAGACCATTGAAGACATCAAAGAATCTTCCGTTGAGAATGTTATCATTGAGGAATCTTTGAATGATGAAGAGGAGAATCTCACGGAGATCCAAAGAGTTGGCATTGAAGATTTTGAGGTTTTGAAGGTTGTGGGGCAGGGTGCATTTGCAAAAGTGTACCAGGTGAGGAAAAAGGGAACTTCAGAAATATATGCTATGAAGGTTATGCGAAAGGACAAGATTATGGAGAAAAACCACGCTGAATACATGAAAGCTGAGAGGGAGATTTTGACAAAGATAGAGCACCCCTTTGTTGTACAACTCGGATACTCTTTTCAGTATTTATTGTATCTTGTGCTGGATTTTGTAAATGGGGGCCATCTATTTTTTCAGCTTTATCACCAGGGCCTTTTCAGAGAGGATCTAGCACGCATATACGCAGCCGAGATTGTTTCTGCAGTTTCCCATCTCCACTCAAAGGGAATAATGCACAGGGATCTAAAACCTGAGAATATCCTAATGGATGCTGATGGCCATGTTATGTTGACTGATTTTGGATTAGCAAAAAAATTTGAAGAAAGCACAAGATCTAATTCGTTGTGTGGTACAACGGAGTACATGGCACCTGAAATTATTCTTGGAAAGGGCCATGACAAAGCTGCCGATTGGTGGAGTGTAGGCATCTTACTGTTTGAGATGCTCACTGGGAAGCCGCCTTTCTGTGGTGGGAACTGTCAGAAGATTCAGCAGAAGATAATAAAAGATAAGATTAAACTGCCAGGATTTTTGTCAAGTGATGCACATGCACTGTTGAAAGGGCTGCTAAATAAGGATGCACCAAAGCGGTTGGGTTGCGGAGCTAAGGGGATTGAAGAAATTAAAGGACACAAGTGGTTCAAACCAATCAATTGGAAGAAGTTGGATGCACGTGAAATCCAACCAAGTTTTCGGCCAGATGTAGCTGGGAAGCACTGTGTTGCAAACTTTGACAAGCGCTGGACTGATATGCCTCTTGTTGATTCACCAGCCGGGAGTCCAAATGGTGGAAACCCCTTCAAGGACTTCTCTTATGTGAGACCTGCAGCCTCGTTTCTTCAAAATAACAGCCCTGCTTGCTGA

Protein sequence

>MsaT038311.1

MSSTTTGAYLVSCYSGNKNNGLFCWILICLLPKFLGTAFAFINFLLIQAIDRSPSAMVSSQFSGMYKPLLFPVNDPGTTTTDHVELDFSDVFGPLTVEVNNIDSTSFESNDESSELVYEDPEVIITRSHSLVGPSSCISQSLKLGKLTIHESDSDNSLELVERVTEETIEDIKESSVENVIIEESLNDEEENLTEIQRVGIEDFEVLKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIMEKNHAEYMKAEREILTKIEHPFVVQLGYSFQYLLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSKGIMHRDLKPENILMDADGHVMLTDFGLAKKFEESTRSNSLCGTTEYMAPEIILGKGHDKAADWWSVGILLFEMLTGKPPFCGGNCQKIQQKIIKDKIKLPGFLSSDAHALLKGLLNKDAPKRLGCGAKGIEEIKGHKWFKPINWKKLDAREIQPSFRPDVAGKHCVANFDKRWTDMPLVDSPAGSPNGGNPFKDFSYVRPAASFLQNNSPAC*