AlfalfaGEDB | MsaG038355

M. sativa ssp. caerulea / MsaG038355

KEGG: -
GO: GO:0001708 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0008356 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009889 GO:0009956 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045165 GO:0045185 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051235 GO:0051252 GO:0051301 GO:0051457 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070727 GO:0072595 GO:0080090 GO:0090610 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038355	KYP42391.1	66.083	743	161	13	1	730	1	665	0.0	866

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038355	sp\|Q9AVK4\|SCR_PEA	97.253	364	8	1	369	730	456	819	0.0	742
MsaG038355	sp\|Q9AVK4\|SCR_PEA	66.162	396	95	12	1	375	1	378	8.12e-113	363

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038355	tr\|A0A151RIT4\|A0A151RIT4_CAJCA	66.083	743	161	13	1	730	1	665	0.0	866

TFs/TRs:

Gene ID	Type	Classification
MsaG038355	TF	GRAS

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001897	MsaG038355	0.801192	1.693672e-48	2.352391e-46
MsaG002114	MsaG038355	0.812509	7.035397e-51	1.277718e-48
MsaG004339	MsaG038355	0.851607	1.520048e-60	8.707913e-58
MsaG004348	MsaG038355	0.822885	3.289366e-53	7.812259e-51
MsaG005213	MsaG038355	0.803838	4.852447e-49	7.160958e-47
MsaG005232	MsaG038355	0.810980	1.507607e-50	2.636862e-48
MsaG005475	MsaG038355	0.817248	6.330737e-52	1.296054e-49
MsaG008994	MsaG038355	0.850847	2.486453e-60	1.387522e-57
MsaG011119	MsaG038355	0.846955	2.957099e-59	1.445843e-56
MsaG011469	MsaG038355	0.804747	3.144551e-49	4.739414e-47
MsaG012360	MsaG038355	0.819676	1.793147e-52	3.909918e-50
MsaG012887	MsaG038355	0.810102	2.329125e-50	3.987330e-48
MsaG017182	MsaG038355	0.811839	9.830451e-51	1.756008e-48
MsaG017358	MsaG038355	0.807379	8.836712e-50	1.416793e-47
MsaG017725	MsaG038355	0.810143	2.281603e-50	3.909914e-48
MsaG017919	MsaG038355	0.842502	4.626045e-58	1.955049e-55
MsaG017992	MsaG038355	0.837674	8.296607e-57	3.012565e-54
MsaG020042	MsaG038355	0.802867	7.692721e-49	1.110049e-46
MsaG021109	MsaG038355	0.807983	6.586686e-50	1.071479e-47
MsaG021324	MsaG038355	0.816352	1.003237e-51	2.007058e-49
MsaG023970	MsaG038355	0.820498	1.165298e-52	2.596906e-50
MsaG024000	MsaG038355	0.811075	1.438527e-50	2.521903e-48
MsaG024459	MsaG038355	0.810365	2.044561e-50	3.522837e-48
MsaG025643	MsaG038355	0.801599	1.399283e-48	1.961519e-46
MsaG026675	MsaG038355	0.809934	2.530451e-50	4.314288e-48
MsaG028511	MsaG038355	0.813673	3.918910e-51	7.327059e-49
MsaG028986	MsaG038355	0.804076	4.333275e-49	6.430504e-47
MsaG029234	MsaG038355	0.804455	3.614997e-49	5.411664e-47
MsaG030238	MsaG038355	0.817589	5.306655e-52	1.095953e-49
MsaG031216	MsaG038355	0.804015	4.461172e-49	6.610764e-47
MsaG031475	MsaG038355	0.807320	9.096879e-50	1.456412e-47
MsaG032036	MsaG038355	0.801945	1.189244e-48	1.680251e-46
MsaG032554	MsaG038355	0.811727	1.039655e-50	1.852003e-48
MsaG033937	MsaG038355	0.832007	2.182736e-55	6.694398e-53
MsaG033934	MsaG038355	0.857353	3.367510e-62	2.370641e-59
MsaG033936	MsaG038355	0.862400	1.030544e-63	8.784795e-61
MsaG033931	MsaG038355	0.866056	7.553701e-65	7.444429e-62
MsaG033932	MsaG038355	0.815866	1.286356e-51	2.541802e-49
MsaG035271	MsaG038355	0.817983	4.330199e-52	9.034217e-50
MsaG035857	MsaG038355	0.809932	2.532273e-50	4.317239e-48
MsaG036982	MsaG038355	0.810232	2.183644e-50	3.750184e-48
MsaG037339	MsaG038355	0.809156	3.709825e-50	6.207567e-48
MsaG037891	MsaG038355	0.814314	2.833580e-51	5.383840e-49
MsaG038355	MsaG040450	0.818678	3.017808e-52	6.410387e-50
MsaG038355	MsaG040731	0.818421	3.449673e-52	7.278841e-50
MsaG038355	MsaG041680	0.804995	2.792280e-49	4.232794e-47
MsaG038355	MsaG045044	0.855288	1.349540e-61	8.810109e-59
MsaG038355	MsaG045542	0.810096	2.335367e-50	3.997473e-48
MsaG038355	MsaG046074	0.801109	1.760706e-48	2.440897e-46
MsaG038355	MsaG046866	0.802172	1.068445e-48	1.517404e-46
MsaG038355	MsaG047065	0.805058	2.708717e-49	4.112219e-47
MsaG038355	MsaG001761	0.808618	4.829905e-50	7.977725e-48
MsaG038355	MsaG018940	0.817551	5.412356e-52	1.116705e-49
MsaG038355	MsaG030753	0.810542	1.873445e-50	3.241917e-48
MsaG038355	MsaG036937	0.810874	1.589034e-50	2.772023e-48
MsaG038355	MsaG036557	0.829940	6.982914e-55	2.017471e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038355	MtrunA17_Chr7g0245601	99.724	362	1	0	369	730	444	805	0.0	763
MsaG038355	MtrunA17_Chr7g0245601	89.544	373	20	7	1	368	1	359	1.48e-168	504
MsaG038355	MtrunA17_Chr4g0038761	62.994	354	127	2	369	718	90	443	3.81e-159	468
MsaG038355	MtrunA17_Chr1g0183641	54.131	351	153	5	370	716	130	476	7.50e-127	386
MsaG038355	MtrunA17_Chr7g0224271	41.129	372	192	6	369	717	306	673	2.39e-90	296
MsaG038355	MtrunA17_Chr1g0159461	37.736	371	216	6	361	717	223	592	2.37e-65	227
MsaG038355	MtrunA17_Chr8g0376381	36.461	373	210	11	369	728	175	533	1.08e-62	218
MsaG038355	MtrunA17_Chr3g0110971	36.340	377	202	11	369	719	225	589	1.79e-62	219
MsaG038355	MtrunA17_Chr2g0306641	38.192	343	170	10	399	717	163	487	1.12e-61	215
MsaG038355	MtrunA17_Chr4g0057291	35.200	375	209	10	369	718	298	663	5.78e-61	217
MsaG038355	MtrunA17_Chr3g0125811	35.580	371	224	6	361	717	201	570	8.82e-61	214
MsaG038355	MtrunA17_Chr2g0319091	37.389	337	196	6	394	716	243	578	1.76e-59	211
MsaG038355	MtrunA17_Chr5g0445331	35.215	372	222	8	364	717	162	532	1.45e-57	204
MsaG038355	MtrunA17_Chr5g0447691	34.153	366	220	7	369	717	183	544	3.14e-56	201
MsaG038355	MtrunA17_Chr3g0101141	33.333	363	227	6	369	717	181	542	4.45e-54	195
MsaG038355	MtrunA17_Chr4g0076091	35.608	337	202	6	394	716	207	542	9.27e-54	194
MsaG038355	MtrunA17_Chr5g0424131	35.904	376	208	12	372	716	125	498	7.02e-53	191
MsaG038355	MtrunA17_Chr4g0039661	35.988	339	195	10	394	717	224	555	1.51e-52	191
MsaG038355	MtrunA17_Chr8g0357601	34.332	367	221	7	369	717	188	552	1.59e-52	191
MsaG038355	MtrunA17_Chr1g0200401	32.546	381	216	12	370	717	87	459	1.26e-51	186
MsaG038355	MtrunA17_Chr3g0114841	36.267	375	203	14	372	716	131	499	3.30e-50	183
MsaG038355	MtrunA17_Chr3g0085681	29.167	408	228	8	369	717	31	436	6.89e-50	181
MsaG038355	MtrunA17_Chr2g0328391	31.421	366	235	6	369	718	305	670	7.08e-50	186
MsaG038355	MtrunA17_Chr2g0290241	30.256	390	251	8	342	717	43	425	1.00e-49	180
MsaG038355	MtrunA17_Chr7g0238891	30.220	364	240	6	369	718	378	741	6.37e-48	181
MsaG038355	MtrunA17_Chr4g0057891	31.250	368	232	8	369	717	155	520	7.15e-48	177
MsaG038355	MtrunA17_Chr4g0031701	29.539	369	240	7	369	718	260	627	2.34e-46	175
MsaG038355	MtrunA17_Chr4g0031721	30.495	364	239	5	369	718	322	685	5.74e-46	174
MsaG038355	MtrunA17_Chr4g0031711	30.163	368	239	7	369	718	367	734	7.12e-46	175
MsaG038355	MtrunA17_Chr4g0031741	30.328	366	235	8	369	718	290	651	8.78e-46	173
MsaG038355	MtrunA17_Chr4g0031731	29.810	369	239	8	369	718	260	627	6.37e-45	171
MsaG038355	MtrunA17_Chr2g0328341	31.436	369	227	10	369	718	278	639	8.40e-44	167
MsaG038355	MtrunA17_Chr2g0328411	28.836	378	246	7	353	716	285	653	1.62e-42	164
MsaG038355	MtrunA17_Chr2g0328381	30.579	363	238	8	369	718	281	642	5.58e-42	162
MsaG038355	MtrunA17_Chr2g0328431	28.684	380	248	8	353	718	285	655	6.52e-40	156
MsaG038355	MtrunA17_Chr7g0270031	31.165	369	239	10	362	717	188	554	1.79e-39	154
MsaG038355	MtrunA17_Chr2g0294471	31.351	370	230	11	369	717	210	576	3.06e-39	153
MsaG038355	MtrunA17_Chr5g0401131	28.191	376	238	13	370	718	121	491	1.09e-38	150
MsaG038355	MtrunA17_Chr5g0396491	40.957	188	106	2	371	555	64	249	2.76e-38	149
MsaG038355	MtrunA17_Chr5g0396491	38.255	149	87	3	571	717	333	478	8.61e-23	102
MsaG038355	MtrunA17_Chr2g0328401	29.305	331	215	7	369	684	296	622	1.38e-37	149
MsaG038355	MtrunA17_Chr2g0328361	29.363	361	220	8	369	718	280	616	4.29e-37	147
MsaG038355	MtrunA17_Chr2g0294461	30.108	372	235	12	369	717	216	585	6.80e-37	146
MsaG038355	MtrunA17_Chr4g0038851	40.107	187	109	2	371	555	56	241	1.76e-35	140
MsaG038355	MtrunA17_Chr4g0038851	37.584	149	88	3	571	717	324	469	2.14e-20	95.1
MsaG038355	MtrunA17_Chr3g0085361	27.893	337	184	7	438	717	16	350	4.84e-35	136
MsaG038355	MtrunA17_Chr2g0329591	26.649	379	241	9	370	718	81	452	5.64e-35	138
MsaG038355	MtrunA17_Chr8g0383981	28.698	338	206	12	399	718	177	497	1.73e-32	132
MsaG038355	MtrunA17_Chr2g0328371	32.271	251	153	7	436	672	4	251	6.81e-30	119
MsaG038355	MtrunA17_Chr4g0012071	26.178	382	251	8	353	717	184	551	1.61e-27	117
MsaG038355	MtrunA17_Chr7g0236851	27.273	374	243	11	362	716	293	656	5.55e-27	117
MsaG038355	MtrunA17_Chr7g0230771	27.520	367	242	8	364	717	376	731	1.06e-26	116
MsaG038355	MtrunA17_Chr1g0194621	24.938	401	265	13	348	717	123	518	5.83e-26	112
MsaG038355	MtrunA17_Chr7g0230731	26.287	369	244	8	364	717	373	728	7.75e-26	113
MsaG038355	MtrunA17_Chr8g0373561	27.500	360	232	13	375	717	194	541	3.68e-24	107
MsaG038355	MtrunA17_Chr6g0468561	28.940	349	206	13	396	717	329	662	1.68e-22	102
MsaG038355	MtrunA17_Chr5g0401421	23.114	411	249	14	370	718	42	447	1.71e-18	89.0
MsaG038355	MtrunA17_Chr8g0344101	24.479	384	241	13	370	717	230	600	1.95e-17	86.7
MsaG038355	MtrunA17_Chr4g0053901	23.415	410	247	14	370	718	66	469	1.93e-15	79.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038355	AT3G54220.1	64.273	571	129	10	202	718	102	651	0.0	704
MsaG038355	AT5G41920.1	57.222	360	142	6	369	720	49	404	6.61e-137	409
MsaG038355	AT1G14920.1	37.534	365	199	11	369	717	178	529	7.93e-63	219
MsaG038355	AT1G66350.1	37.255	357	205	10	369	717	161	506	1.06e-62	218
MsaG038355	AT3G03450.1	37.500	368	200	11	369	717	189	545	1.34e-61	216
MsaG038355	AT1G63100.1	35.580	371	216	9	369	716	258	628	1.74e-60	215
MsaG038355	AT1G63100.2	35.580	371	216	9	369	716	283	653	4.86e-60	214
MsaG038355	AT1G50600.3	35.598	368	222	6	364	717	160	526	7.24e-60	211
MsaG038355	AT2G01570.1	36.986	365	201	11	369	717	230	581	1.07e-59	212
MsaG038355	AT1G50600.1	35.598	368	222	6	364	717	231	597	1.91e-59	211
MsaG038355	AT1G50600.2	35.598	368	222	6	364	717	235	601	2.03e-59	211
MsaG038355	AT2G04890.1	35.278	360	217	7	369	717	59	413	5.31e-59	206
MsaG038355	AT5G17490.1	34.406	404	236	12	332	717	124	516	3.01e-58	206
MsaG038355	AT5G66770.1	36.066	366	207	12	371	717	227	584	5.61e-55	199
MsaG038355	AT5G48150.1	33.693	371	216	9	369	717	128	490	8.42e-52	188
MsaG038355	AT5G48150.4	33.693	371	216	9	369	717	128	490	8.42e-52	188
MsaG038355	AT5G48150.2	33.693	371	216	9	369	717	128	490	8.42e-52	188
MsaG038355	AT5G48150.3	33.693	371	216	9	369	717	128	490	8.42e-52	188
MsaG038355	AT1G21450.1	34.711	363	221	5	370	717	232	593	8.60e-52	190
MsaG038355	AT4G17230.1	34.153	366	220	7	370	718	165	526	3.40e-51	187
MsaG038355	AT4G17230.2	34.153	366	220	7	370	718	165	526	3.40e-51	187
MsaG038355	AT5G59450.1	28.191	376	251	8	369	725	233	608	4.49e-46	174
MsaG038355	AT1G07530.1	30.959	365	237	6	369	718	402	766	2.92e-45	174
MsaG038355	AT2G37650.1	29.945	364	239	6	369	718	353	714	1.66e-44	171
MsaG038355	AT2G37650.2	29.945	364	239	6	369	718	341	702	1.87e-44	171
MsaG038355	AT3G50650.1	32.692	364	220	10	373	717	185	542	7.64e-44	166
MsaG038355	AT1G55580.1	32.576	396	216	12	371	717	52	445	1.05e-42	161
MsaG038355	AT2G29060.2	30.352	369	236	9	369	718	290	656	1.35e-40	159
MsaG038355	AT2G29060.1	30.352	369	236	9	369	718	327	693	1.56e-40	159
MsaG038355	AT3G46600.2	29.235	366	240	8	369	718	10	372	2.03e-40	153
MsaG038355	AT3G46600.1	29.235	366	240	8	369	718	218	580	8.57e-40	155
MsaG038355	AT3G46600.3	29.235	366	240	8	369	718	186	548	1.38e-39	154
MsaG038355	AT4G37650.1	27.822	381	240	10	370	718	153	530	9.93e-39	151
MsaG038355	AT4G08250.1	30.337	356	230	8	377	716	123	476	6.75e-38	148
MsaG038355	AT2G29065.1	28.000	375	242	10	369	718	258	629	4.25e-36	145
MsaG038355	AT1G07520.1	28.342	374	241	9	369	718	324	694	6.92e-36	145
MsaG038355	AT1G07520.3	28.342	374	241	9	369	718	325	695	7.62e-36	145
MsaG038355	AT1G07520.2	28.342	374	241	9	369	718	160	530	1.06e-35	142
MsaG038355	AT1G07520.4	28.342	374	241	9	369	718	160	530	1.06e-35	142
MsaG038355	AT1G50420.1	38.830	188	112	1	371	555	65	252	2.40e-34	137
MsaG038355	AT1G50420.1	34.416	154	96	3	566	717	329	479	3.17e-19	92.0
MsaG038355	AT5G52510.1	28.571	378	228	11	370	717	275	640	2.68e-30	127
MsaG038355	AT4G36710.1	26.776	366	240	11	369	717	131	485	6.80e-25	109
MsaG038355	AT3G60630.1	30.351	313	170	11	435	717	328	622	9.73e-25	110
MsaG038355	AT4G00150.1	28.863	343	210	13	388	717	233	554	1.61e-23	105
MsaG038355	AT2G45160.1	29.508	305	180	10	435	717	348	639	6.57e-22	101
MsaG038355	AT3G49950.1	25.858	379	245	15	370	718	37	409	6.88e-19	90.1
MsaG038355	AT3G13840.1	27.297	370	233	14	370	717	155	510	1.08e-18	90.5

Find 112 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATCTTTCCAACCAAGTTTA+AGG	0.116743	7:+75461890	None:intergenic
ATCAAAACATGTTTCCTAAT+TGG	0.117353	7:-75463741	MsaT038355.1:CDS
TTACCTTCTTCCACAGAAAA+AGG	0.239785	7:-75464531	MsaT038355.1:CDS
TCAAAACATGTTTCCTAATT+GGG	0.250183	7:-75463740	MsaT038355.1:CDS
GTGAGATAAAGTTTCATAAT+TGG	0.256096	7:-75462038	MsaT038355.1:CDS
ACAGTTACTGTTTCTGTTGC+TGG	0.272831	7:+75464161	None:intergenic
TCCACTACTGTTACCACTTT+AGG	0.285917	7:+75462249	None:intergenic
TATACTTTGGTTGAGGATAA+TGG	0.311713	7:-75461916	MsaT038355.1:CDS
ATTTGTGGCACACCCCAATT+AGG	0.312254	7:+75463727	None:intergenic
GCTGCTTGTGCTTTGTTCAA+TGG	0.326297	7:-75464819	MsaT038355.1:CDS
CATTCTCTATATGATGTTAC+TGG	0.333927	7:-75462893	MsaT038355.1:CDS
GAGCAATGCAGGTTCATTCT+TGG	0.338861	7:-75462217	MsaT038355.1:CDS
TCGCAGCTTTCAACGCCTTT+CGG	0.347062	7:-75463412	MsaT038355.1:CDS
TTTCCAACTTTCTCAGCAAC+AGG	0.359463	7:+75462977	None:intergenic
TCAGCATTATTTGATTCTCT+TGG	0.361167	7:-75462165	MsaT038355.1:CDS
TTTATCTCACCACTCCTTGA+TGG	0.363245	7:+75462051	None:intergenic
ACACAAGCTAGTCTTCTTCT+TGG	0.369111	7:-75461958	MsaT038355.1:CDS
TGTTGAAAATGAGTGTAGTT+TGG	0.371295	7:+75464273	None:intergenic
AACCATGTTCCTAATATTTG+TGG	0.381285	7:-75464231	MsaT038355.1:CDS
GTTTCTGTTGCTGGTTCTGT+TGG	0.383646	7:+75464170	None:intergenic
AAACCTCAGCTGCAACAAAC+TGG	0.395103	7:-75464077	MsaT038355.1:CDS
TATGTGAGACTCACTGGATT+AGG	0.413778	7:-75463082	MsaT038355.1:CDS
TAACTCTTCACCTTCTATGA+TGG	0.414564	7:-75464103	MsaT038355.1:CDS
CAGAAGCTGTTGCTGTTCAT+TGG	0.419326	7:-75462922	MsaT038355.1:CDS
TTCATTCTTGGGAAGGTTTG+TGG	0.421301	7:-75462205	MsaT038355.1:CDS
TCAAGAACAAGAGCAAGGTT+TGG	0.421529	7:+75463958	None:intergenic
CAAAAGCTTCTTGTATAGCT+TGG	0.424689	7:+75463206	None:intergenic
GCTGCAACAAACTGGATTGA+TGG	0.429027	7:-75464069	MsaT038355.1:CDS
ATGGTATCCTTAAACTTGGT+TGG	0.429657	7:-75461897	MsaT038355.1:CDS
AGCAATGCAGGTTCATTCTT+GGG	0.429990	7:-75462216	MsaT038355.1:CDS
CCCTTCTGAAGGGTATACTT+TGG	0.433004	7:-75461929	MsaT038355.1:CDS
AGACTAGTGAGTTCATGTTT+AGG	0.434001	7:-75463340	MsaT038355.1:CDS
ATCTTCACTACTGATATTGC+TGG	0.434098	7:+75464755	None:intergenic
GATTCTCTTGGTTCAAGCTA+TGG	0.434363	7:-75462153	MsaT038355.1:CDS
TGTTGCTGGTTCTGTTGGGT+TGG	0.440162	7:+75464175	None:intergenic
TTTCCTGTTGCTGAGAAAGT+TGG	0.444010	7:-75462980	MsaT038355.1:CDS
CATATCCTTGCTTCAAGACC+AGG	0.445706	7:-75463115	MsaT038355.1:CDS
TTTCTGTTGCTGGTTCTGTT+GGG	0.451663	7:+75464171	None:intergenic
CTTGGCATGTTCCCTTCTGA+AGG	0.451744	7:-75461940	MsaT038355.1:CDS
GTTTGCTTACTGCTTCTGCT+TGG	0.455432	7:-75461864	MsaT038355.1:CDS
TTGCTCTTGTTCTTGAACAT+AGG	0.455705	7:-75463951	MsaT038355.1:CDS
TTGAGATTGTTGGAAGAAGA+AGG	0.456597	7:+75464318	None:intergenic
ATGAGTGTAGTTTGGAGCAT+TGG	0.456908	7:+75464281	None:intergenic
GTTTGGAGCATTGGAGTTTG+AGG	0.456950	7:+75464290	None:intergenic
CGTAACGTTCTTGCAGTTGG+TGG	0.465242	7:-75462075	MsaT038355.1:CDS
TTTAGAGGTATCTCTTTGGC+TGG	0.469891	7:-75461991	MsaT038355.1:CDS
GTTTGAAGCACTATTGTTGT+TGG	0.471893	7:+75464779	None:intergenic
CCTCCTTATGTGAGACTCAC+TGG	0.475283	7:-75463088	MsaT038355.1:CDS
TGAGGAATTGTTGAGATTGT+TGG	0.475428	7:+75464308	None:intergenic
GCAACAGGAAAGAACTCAAA+AGG	0.485861	7:+75462992	None:intergenic
GAACAAGACTTGAGCAATGC+AGG	0.491335	7:-75462228	MsaT038355.1:CDS
TTTCTCTCAGGAACAACACT+TGG	0.491378	7:+75463904	None:intergenic
GTTCAGATACAAACACTTTG+TGG	0.494320	7:-75462871	MsaT038355.1:CDS
AAATGAGAGAATTTCACAAA+TGG	0.504284	7:+75463238	None:intergenic
CACTGGATTAGGCACTTCCA+TGG	0.505116	7:-75463071	MsaT038355.1:CDS
ATGCAAGGTTTACAATGGCC+TGG	0.505520	7:-75463145	MsaT038355.1:CDS
ATGTAGGTTGGCACCTAAAG+TGG	0.505838	7:-75462262	MsaT038355.1:intron
TGAAGGGTATACTTTGGTTG+AGG	0.506995	7:-75461923	MsaT038355.1:CDS
TAGCAACATAGTGGAGTAGT+TGG	0.507219	7:+75464341	None:intergenic
TATGACATTGTTGGTATGAA+AGG	0.510105	7:+75461834	None:intergenic
AATCCAGTTTGTTGCAGCTG+AGG	0.510974	7:+75464074	None:intergenic
TTGTTGTTGTTGTGGCATGT+TGG	0.511794	7:+75464707	None:intergenic
AAAATCTATTGTTGTTGTTG+TGG	0.516540	7:+75464607	None:intergenic
ATGGAAACACTTGAAGCTAC+TGG	0.517893	7:-75463052	MsaT038355.1:CDS
CTCACATAAGGAGGTCCACC+TGG	0.520829	7:+75463097	None:intergenic
AGTAGCTTCAAGTGTTTCCA+TGG	0.526271	7:+75463054	None:intergenic
CAAAACATGTTTCCTAATTG+GGG	0.527048	7:-75463739	MsaT038355.1:intron
GATAATGGTATCCTTAAACT+TGG	0.528102	7:-75461901	MsaT038355.1:CDS
ATTCGTAACGTTCTTGCAGT+TGG	0.528879	7:-75462078	MsaT038355.1:CDS
ACACTTTGTGGCTCTTGCAA+AGG	0.531826	7:-75462859	MsaT038355.1:intron
TTGGCATGTTCCCTTCTGAA+GGG	0.532685	7:-75461939	MsaT038355.1:CDS
AGTAACTGTAACATAAGTTC+TGG	0.539385	7:-75464147	MsaT038355.1:CDS
CTAACATTGTTGATGAGTTG+AGG	0.539907	7:+75464003	None:intergenic
AGAGCAAGGTTTGGATTACA+AGG	0.541984	7:+75463967	None:intergenic
ACCAAAGTATACCCTTCAGA+AGG	0.543263	7:+75461928	None:intergenic
TTGGTTGTGACGGTCACAGT+GGG	0.545379	7:+75464360	None:intergenic
TTGCAGTTGGTGGACCATCA+AGG	0.546702	7:-75462065	MsaT038355.1:CDS
ATGCAGGTTCATTCTTGGGA+AGG	0.550894	7:-75462212	MsaT038355.1:CDS
GAGGTTTCATCCATCATAGA+AGG	0.554125	7:+75464093	None:intergenic
TCATACCACATCATAACTGA+TGG	0.555692	7:-75461816	None:intergenic
GAGGAATTAACATTAGAAGC+AGG	0.557000	7:+75463835	None:intergenic
ATGACATTGTTGGTATGAAA+GGG	0.560826	7:+75461835	None:intergenic
AGAAGAAGGTAGCAACATAG+TGG	0.560888	7:+75464332	None:intergenic
ATTGTTGATGAGTTGAGGAA+TGG	0.561897	7:+75464008	None:intergenic
AATCCAGTGAGTCTCACATA+AGG	0.572061	7:+75463085	None:intergenic
ATTATTATTATTTGTACCTG+CGG	0.572319	7:+75464485	None:intergenic
ATAGATCTTGATATCATGCA+AGG	0.576982	7:-75463160	MsaT038355.1:CDS
AGAGAGTGAAGAGAGACATG+TGG	0.579883	7:-75462127	MsaT038355.1:CDS
GTCCACCTGGTCTTGAAGCA+AGG	0.584919	7:+75463110	None:intergenic
ATGATGTGGTATGACATTGT+TGG	0.587203	7:+75461825	None:intergenic
TGATTATGTAGTGTGTGTGG+TGG	0.599368	7:+75463301	None:intergenic
ATATCATGCAAGGTTTACAA+TGG	0.601849	7:-75463150	MsaT038355.1:CDS
AACCACAAATATTAGGAACA+TGG	0.615138	7:+75464229	None:intergenic
TATGTTCAAGAACAAGAGCA+AGG	0.620046	7:+75463953	None:intergenic
GAGTGAAGAGAGACATGTGG+TGG	0.624909	7:-75462124	MsaT038355.1:CDS
CCAAAGTATACCCTTCAGAA+GGG	0.626039	7:+75461929	None:intergenic
AGTGGAGTAGTTGGTTGTGA+CGG	0.635058	7:+75464350	None:intergenic
TAGATCCATCAGTTATGATG+TGG	0.639240	7:+75461811	None:intergenic
ACCTAAAGTGGTAACAGTAG+TGG	0.640826	7:-75462250	MsaT038355.1:CDS
CCAGTGAGTCTCACATAAGG+AGG	0.642698	7:+75463088	None:intergenic
CTTTGTGCTGATGTACCGAA+AGG	0.646157	7:+75463397	None:intergenic
ACAACAACAACACTAGCCGC+AGG	0.647867	7:-75464501	MsaT038355.1:CDS
ACATTGTTGGTATGAAAGGG+AGG	0.648110	7:+75461838	None:intergenic
GTTGGTTGTGACGGTCACAG+TGG	0.651008	7:+75464359	None:intergenic
ATCCTTGCTTCAAGACCAGG+TGG	0.657302	7:-75463112	MsaT038355.1:CDS
AGAGAAAAGCTTCAACAGTG+TGG	0.663978	7:-75462015	MsaT038355.1:CDS
GCAAGGATATGAAACAAACC+AGG	0.669692	7:+75463127	None:intergenic
AGGTAAAGTACAATTCAATG+AGG	0.676877	7:+75464548	None:intergenic
GTTGGTGGACCATCAAGGAG+TGG	0.725373	7:-75462060	MsaT038355.1:CDS
GAGGAACAATGTCATCAACA+CGG	0.736939	7:+75463797	None:intergenic
TGGTTGTGACGGTCACAGTG+GGG	0.753890	7:+75464361	None:intergenic
ACGGTTCATGAGTTTCACTG+AGG	0.765117	7:+75463816	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	75461819	75464844	75461819	ID=MsaG038355
Chr7	mRNA	75461819	75464844	75461819	ID=MsaT038355.1;Parent=MsaG038355
Chr7	exon	75461819	75462278	75461819	ID=MsaT038355.1.exon3;Parent=MsaT038355.1
Chr7	CDS	75461819	75462278	75461819	ID=cds.MsaT038355.1;Parent=MsaT038355.1
Chr7	exon	75462860	75463487	75462860	ID=MsaT038355.1.exon2;Parent=MsaT038355.1
Chr7	CDS	75462860	75463487	75462860	ID=cds.MsaT038355.1;Parent=MsaT038355.1
Chr7	exon	75463740	75464844	75463740	ID=MsaT038355.1.exon1;Parent=MsaT038355.1
Chr7	CDS	75463740	75464844	75463740	ID=cds.MsaT038355.1;Parent=MsaT038355.1

Gene Sequence

>MsaT038355.1

ATGGCTGCTTGTGCTTTGTTCAATGGTGCTACTACTGATGAAACCAACAACAATAGTGCTTCAAACTCCAGCAATATCAGTAGTGAAGATTTACACACTCTACACAACAACAACACCAACATGCCACAACAACAACAACAACAACAACAACCTCATTCTGAAAGAAAAGTGCTTAGAAAAAGAATGGCTTCTGAAATGGAACTTCAACTTCAAGTCCACAACAACAACAATAGATTTTCTCGTAGAAACAACAACAACAGCAGCAACAACATTTCCTCATTGAATTGTACTTTACCTTCTTCCACAGAAAAAGGTGTTACAACAACAACAACACTAGCCGCAGGTACAAATAATAATAATAATAATTTTCATTATAATACTAATAATATAAACAATAGTAATAATATTAGTCATCATAGTAACGTTGCTTTGTCACGAGATAACGTTGCTGTTCAAAATTACCCCACTGTGACCGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCTTCCAACAATCTCAACAATTCCTCAAACTCCAATGCTCCAAACTACACTCATTTTCAACAACCACTTGTTGAGGAACAAAACCATGTTCCTAATATTTGTGGTTTTTCTGGTTTACCACTTTTTCCATCTCAAAACCAACCCAACAGAACCAGCAACAGAAACAGTAACTGTAACATAAGTTCTGGTACTAATATTGTTGATGTTGTTAACTCTTCACCTTCTATGATGGATGAAACCTCAGCTGCAACAAACTGGATTGATGGTATTTTGAAGGATCTTATTCATACTTCAAACAGTGTTTCCATTCCTCAACTCATCAACAATGTTAGAGAGATTATATATCCTTGTAATCCAAACCTTGCTCTTGTTCTTGAACATAGGTTACGTCTTCTTACAGAAACTGCTCCAAGTGTTGTTCCTGAGAGAAAAAGAAACAACACTGAACAACAAAGTGTTGCTAATGTTAATGTTTTACCTGCTTCTAATGTTAATTCCTCAGTGAAACTCATGAACCGTGTTGATGACATTGTTCCTCATTTTTCTGATTCATCAACTCTTTTGAATCAAAATCAAAACATGTTTCCTAATTGGGAAGCAGTATCAGCAGAGAATCTTGAACAAGCAAACAAGATGTTACTCGAAATTTCGCAGCTTTCAACGCCTTTCGGTACATCAGCACAAAGAGTAGCAGCTTATTTCTCAGAAGCAATTTCAGCAAGACTAGTGAGTTCATGTTTAGGAATCTATGCAACACTTCCACCACACACACTACATAATCAAAAAGTTGCTTCAGCTTTTCAAGTCTTCAATGGTATTAGTCCATTTGTGAAATTCTCTCATTTCACTGCTAACCAAGCTATACAAGAAGCTTTTGATAGAGAAGAAAGAGTTCATATCATAGATCTTGATATCATGCAAGGTTTACAATGGCCTGGTTTGTTTCATATCCTTGCTTCAAGACCAGGTGGACCTCCTTATGTGAGACTCACTGGATTAGGCACTTCCATGGAAACACTTGAAGCTACTGGTAAACGTTTGTCTGATTTTGCATCTAAACTAGGTCTTCCTTTTGAGTTCTTTCCTGTTGCTGAGAAAGTTGGAAACATTGATGTTGAGAAGCTTAATGTTAGTAAATCAGAAGCTGTTGCTGTTCATTGGTTGCAACATTCTCTATATGATGTTACTGGTTCAGATACAAACACTTTGTGGCTCTTGCAAAGGTTGGCACCTAAAGTGGTAACAGTAGTGGAACAAGACTTGAGCAATGCAGGTTCATTCTTGGGAAGGTTTGTGGAAGCAATACATTACTACTCAGCATTATTTGATTCTCTTGGTTCAAGCTATGGAGAAGAGAGTGAAGAGAGACATGTGGTGGAGCAGCAACTATTATCAAGAGAGATTCGTAACGTTCTTGCAGTTGGTGGACCATCAAGGAGTGGTGAGATAAAGTTTCATAATTGGAGAGAAAAGCTTCAACAGTGTGGTTTTAGAGGTATCTCTTTGGCTGGTAATGCTGCTACACAAGCTAGTCTTCTTCTTGGCATGTTCCCTTCTGAAGGGTATACTTTGGTTGAGGATAATGGTATCCTTAAACTTGGTTGGAAAGATCTTTGTTTGCTTACTGCTTCTGCTTGGAGACCTCCCTTTCATACCAACAATGTCATACCACATCATAACTGA

Protein sequence

>MsaT038355.1

MAACALFNGATTDETNNNSASNSSNISSEDLHTLHNNNTNMPQQQQQQQQPHSERKVLRKRMASEMELQLQVHNNNNRFSRRNNNNSSNNISSLNCTLPSSTEKGVTTTTTLAAGTNNNNNNFHYNTNNINNSNNISHHSNVALSRDNVAVQNYPTVTVTTNYSTMLLPSSSNNLNNSSNSNAPNYTHFQQPLVEEQNHVPNICGFSGLPLFPSQNQPNRTSNRNSNCNISSGTNIVDVVNSSPSMMDETSAATNWIDGILKDLIHTSNSVSIPQLINNVREIIYPCNPNLALVLEHRLRLLTETAPSVVPERKRNNTEQQSVANVNVLPASNVNSSVKLMNRVDDIVPHFSDSSTLLNQNQNMFPNWEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPPHTLHNQKVASAFQVFNGISPFVKFSHFTANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMETLEATGKRLSDFASKLGLPFEFFPVAEKVGNIDVEKLNVSKSEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEIKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNVIPHHN*