AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG038413

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG038413 MtrunA17_Chr8g0351051 75.486 257 50 5 1 250 1 251 1.50e-133 376
MsaG038413 MtrunA17_Chr7g0246401 97.674 129 3 0 122 250 1 129 9.99e-92 266
MsaG038413 MtrunA17_Chr6g0455511 51.737 259 107 6 1 250 1 250 2.25e-76 231
MsaG038413 MtrunA17_Chr3g0122251 49.416 257 110 7 1 249 1 245 1.34e-72 222
MsaG038413 MtrunA17_Chr7g0220111 50.388 258 111 5 1 250 1 249 1.45e-72 222
MsaG038413 MtrunA17_Chr5g0420091 57.672 189 75 3 1 188 1 185 2.58e-64 199
MsaG038413 MtrunA17_Chr6g0474371 54.639 194 78 3 1 185 1 193 3.96e-63 196
MsaG038413 MtrunA17_Chr4g0061671 58.960 173 69 2 1 173 1 171 1.01e-61 192
MsaG038413 MtrunA17_Chr1g0204111 42.248 258 119 6 1 249 17 253 5.20e-61 192
MsaG038413 MtrunA17_Chr4g0061691 58.580 169 68 2 1 168 1 168 2.03e-59 187
MsaG038413 MtrunA17_Chr8g0366231 56.805 169 71 2 1 168 1 168 9.90e-58 184
MsaG038413 MtrunA17_Chr3g0097101 50.289 173 83 2 1 172 16 186 5.79e-53 171
MsaG038413 MtrunA17_Chr8g0380021 42.995 207 105 4 1 205 17 212 1.28e-51 168
MsaG038413 MtrunA17_Chr5g0420081 53.254 169 77 2 1 168 1 168 4.14e-51 166
MsaG038413 MtrunA17_Chr2g0284911 47.977 173 87 2 1 172 16 186 7.59e-51 166
MsaG038413 MtrunA17_Chr3g0077501 44.444 207 110 4 1 206 1 203 4.63e-48 158
MsaG038413 MtrunA17_Chr7g0220121 51.190 168 80 2 1 168 1 166 1.76e-47 158
MsaG038413 MtrunA17_Chr7g0246431 51.479 169 79 2 1 168 1 167 2.27e-47 156
MsaG038413 MtrunA17_Chr8g0351031 51.163 172 76 3 1 168 1 168 1.16e-46 155
MsaG038413 MtrunA17_Chr4g0057151 53.529 170 74 3 1 168 1 167 1.38e-46 154
MsaG038413 MtrunA17_Chr8g0351041 50.909 165 73 3 1 161 1 161 7.31e-45 148
MsaG038413 MtrunA17_Chr1g0164791 37.553 237 122 6 1 226 1 222 5.01e-42 143
MsaG038413 MtrunA17_Chr3g0125241 45.087 173 87 3 1 173 26 190 2.00e-40 138
MsaG038413 MtrunA17_Chr2g0279821 43.931 173 95 1 1 173 1 171 3.25e-40 139
MsaG038413 MtrunA17_Chr5g0411691 38.889 216 115 5 1 202 1 213 2.77e-39 136
MsaG038413 MtrunA17_Chr4g0020221 46.893 177 87 3 1 173 1 174 4.99e-39 136
MsaG038413 MtrunA17_Chr7g0246381 100.000 63 0 0 1 63 1 63 6.63e-38 127
MsaG038413 MtrunA17_Chr4g0018421 45.882 170 89 2 1 168 1 169 1.18e-37 131
MsaG038413 MtrunA17_Chr4g0049541 44.586 157 85 1 1 157 1 155 4.00e-36 127
MsaG038413 MtrunA17_Chr1g0159661 40.462 173 95 2 1 173 1 165 6.02e-35 123
MsaG038413 MtrunA17_Chr3g0142191 34.454 238 127 6 1 219 1 228 3.88e-34 122
MsaG038413 MtrunA17_Chr5g0404951 34.653 202 126 2 1 199 1 199 1.22e-32 119
MsaG038413 MtrunA17_Chr8g0377551 37.566 189 101 6 66 249 3 179 6.99e-32 115
MsaG038413 MtrunA17_Chr8g0377561 91.379 58 5 0 1 58 1 58 2.04e-31 111
MsaG038413 MtrunA17_Chr7g0246391 79.412 68 12 2 46 113 29 94 3.24e-30 108
MsaG038413 MtrunA17_Chr5g0412461 43.931 173 88 5 1 169 1 168 8.34e-29 108
MsaG038413 MtrunA17_Chr4g0049901 33.921 227 129 6 1 220 27 239 1.17e-28 108
MsaG038413 MtrunA17_Chr2g0308251 79.661 59 12 0 1 59 1 59 1.98e-28 103
MsaG038413 MtrunA17_Chr5g0427401 38.636 176 97 4 1 172 1 169 1.70e-27 105
MsaG038413 MtrunA17_Chr5g0412271 39.326 178 95 3 1 172 1 171 2.02e-27 105
MsaG038413 MtrunA17_Chr1g0173161 75.000 60 15 0 1 60 1 60 5.15e-25 94.7
MsaG038413 MtrunA17_Chr5g0425191 59.459 74 30 0 1 74 1 74 3.12e-23 90.5
MsaG038413 MtrunA17_Chr4g0044071 67.241 58 19 0 1 58 1 58 1.24e-22 89.4
MsaG038413 MtrunA17_Chr5g0427921 65.000 60 21 0 1 60 1 60 9.82e-22 85.5
MsaG038413 MtrunA17_Chr3g0134451 33.163 196 97 7 1 177 1 181 1.11e-21 91.7
MsaG038413 MtrunA17_Chr2g0308271 38.356 146 78 4 28 172 9 143 2.99e-21 88.6
MsaG038413 MtrunA17_Chr1g0166611 73.333 45 12 0 16 60 20 64 7.96e-17 74.7
MsaG038413 MtrunA17_Chr2g0292791 48.571 70 34 1 2 71 9 76 6.75e-16 74.7
MsaG038413 MtrunA17_Chr4g0052061 32.192 146 87 3 1 139 1 141 1.09e-15 72.4
MsaG038413 MtrunA17_Chr2g0325971 42.683 82 45 1 2 83 9 88 2.41e-15 72.8
MsaG038413 MtrunA17_Chr1g0208581 31.707 164 89 6 2 155 9 159 3.01e-15 72.8
MsaG038413 MtrunA17_Chr1g0208561 47.143 70 35 1 2 71 9 76 5.08e-15 72.0
MsaG038413 MtrunA17_Chr3g0089141 47.143 70 35 1 2 71 9 76 6.15e-15 71.6
MsaG038413 MtrunA17_Chr8g0379021 54.386 57 26 0 2 58 12 68 7.33e-15 70.5
MsaG038413 MtrunA17_Chr5g0419601 43.529 85 45 2 1 85 8 89 9.20e-15 71.6
MsaG038413 MtrunA17_Chr3g0099421 48.571 70 34 1 2 71 34 101 1.44e-14 71.2
MsaG038413 MtrunA17_Chr2g0317451 46.429 84 42 2 2 85 9 89 1.52e-14 70.9
MsaG038413 MtrunA17_Chr2g0317481 46.429 84 42 2 2 85 9 89 1.66e-14 70.9
MsaG038413 MtrunA17_Chr2g0333981 48.438 64 33 0 1 64 11 74 2.42e-14 68.9
MsaG038413 MtrunA17_Chr8g0355091 47.143 70 35 1 2 71 9 76 2.45e-14 70.5
MsaG038413 MtrunA17_Chr3g0099411 45.714 70 36 1 2 71 9 76 2.86e-14 69.7
MsaG038413 MtrunA17_Chr5g0417661 54.545 55 25 0 1 55 56 110 3.30e-14 67.4
MsaG038413 MtrunA17_Chr1g0206721 45.714 70 36 1 2 71 9 76 4.04e-14 69.7
MsaG038413 MtrunA17_Chr1g0206701 45.714 70 36 1 2 71 9 76 4.08e-14 69.7
MsaG038413 MtrunA17_Chr1g0187361 48.571 70 34 1 2 71 9 76 4.60e-14 69.7
MsaG038413 MtrunA17_Chr8g0357771 52.632 57 27 0 1 57 1 57 4.70e-14 68.6
MsaG038413 MtrunA17_Chr1g0175601 33.566 143 88 4 1 136 1 143 5.16e-14 68.2
MsaG038413 MtrunA17_Chr5g0422941 29.237 236 123 7 2 225 9 212 6.32e-14 69.3
MsaG038413 MtrunA17_Chr1g0188671 48.571 70 34 1 2 71 47 114 8.76e-14 69.3
MsaG038413 MtrunA17_Chr8g0376821 31.429 140 89 4 1 133 1 140 9.46e-14 67.8
MsaG038413 MtrunA17_Chr4g0060841 30.345 145 87 2 1 142 1 134 9.75e-14 69.7
MsaG038413 MtrunA17_Chr1g0149391 47.143 70 35 1 2 71 9 76 1.16e-13 68.6
MsaG038413 MtrunA17_Chr1g0169761 57.143 49 21 0 1 49 1 49 3.99e-13 65.9
MsaG038413 MtrunA17_Chr1g0175611 55.102 49 22 0 1 49 1 49 4.13e-13 65.5
MsaG038413 MtrunA17_Chr1g0206991 30.769 169 100 6 2 163 9 167 4.51e-13 65.9
MsaG038413 MtrunA17_Chr4g0074101 45.070 71 37 1 1 71 1 69 6.89e-13 65.5
MsaG038413 MtrunA17_Chr5g0422421 42.683 82 44 2 2 83 9 87 8.67e-13 65.9
MsaG038413 MtrunA17_Chr1g0180591 55.102 49 22 0 1 49 1 49 9.03e-13 64.7
MsaG038413 MtrunA17_Chr4g0018951 55.357 56 23 1 16 71 26 79 3.15e-12 63.2
MsaG038413 MtrunA17_Chr2g0300421 50.877 57 28 0 2 58 9 65 4.33e-12 62.8
MsaG038413 MtrunA17_Chr6g0457851 24.000 175 119 4 1 164 11 182 4.43e-12 65.1
MsaG038413 MtrunA17_Chr2g0300441 43.056 72 37 2 2 71 7 76 7.25e-12 63.5
MsaG038413 MtrunA17_Chr4g0052081 45.763 59 32 0 1 59 1 59 7.61e-12 62.4
MsaG038413 MtrunA17_Chr3g0119901 42.254 71 39 1 1 71 8 76 1.61e-11 62.0
MsaG038413 MtrunA17_Chr3g0089151 40.000 70 40 1 2 71 9 76 2.16e-11 60.1
MsaG038413 MtrunA17_Chr3g0085241 42.254 71 39 1 1 71 40 108 2.37e-11 62.0
MsaG038413 MtrunA17_Chr1g0197261 34.109 129 77 3 1 129 1 121 4.64e-11 59.7
MsaG038413 MtrunA17_Chr8g0356071 47.368 57 30 0 1 57 1 57 6.07e-11 59.3
MsaG038413 MtrunA17_Chr1g0197321 36.111 108 64 3 1 104 1 107 8.71e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG038413 AT2G45650.1 64.062 256 82 5 1 250 1 252 1.37e-111 321
MsaG038413 AT3G61120.1 53.386 251 105 7 1 246 1 244 8.34e-80 240
MsaG038413 AT3G02310.1 52.344 256 110 6 1 250 1 250 1.68e-75 229
MsaG038413 AT5G15800.1 50.566 265 102 7 1 250 1 251 7.68e-74 225
MsaG038413 AT1G24260.1 49.416 257 108 7 1 249 1 243 2.50e-72 221
MsaG038413 AT1G24260.2 49.225 258 108 7 1 249 1 244 2.79e-72 221
MsaG038413 AT5G15800.2 49.071 269 111 7 1 250 1 262 2.02e-70 217
MsaG038413 AT3G02310.2 65.116 172 58 2 1 171 1 171 1.10e-69 213
MsaG038413 AT2G03710.2 45.174 259 131 3 1 250 1 257 1.14e-68 212
MsaG038413 AT2G03710.1 55.556 189 82 1 1 189 1 187 1.49e-67 209
MsaG038413 AT2G03710.3 57.558 172 73 0 1 172 1 172 4.77e-66 203
MsaG038413 AT1G24260.3 48.221 253 104 9 1 249 1 230 6.63e-65 202
MsaG038413 AT1G26310.1 48.018 227 109 4 1 222 1 223 4.61e-59 188
MsaG038413 AT1G69120.2 56.805 169 71 2 1 168 1 168 2.30e-56 180
MsaG038413 AT1G69120.1 56.805 169 71 2 1 168 1 168 4.91e-56 180
MsaG038413 AT5G60910.1 54.023 174 78 2 1 173 1 173 7.35e-55 177
MsaG038413 AT3G58780.5 46.231 199 103 3 1 198 22 217 9.28e-54 174
MsaG038413 AT3G58780.1 46.231 199 103 3 1 198 16 211 9.58e-54 174
MsaG038413 AT2G42830.1 45.238 210 109 4 1 209 16 220 4.48e-53 172
MsaG038413 AT2G42830.2 45.283 212 108 5 1 209 16 222 5.34e-52 169
MsaG038413 AT3G58780.2 45.226 199 98 3 1 198 16 204 6.72e-51 166
MsaG038413 AT4G09960.6 42.788 208 104 3 1 195 2 207 2.60e-50 164
MsaG038413 AT4G09960.1 42.788 208 104 3 1 195 1 206 2.81e-50 164
MsaG038413 AT4G09960.5 42.788 208 104 3 1 195 11 216 3.30e-50 164
MsaG038413 AT3G58780.3 44.898 196 84 2 1 172 16 211 4.77e-50 165
MsaG038413 AT4G18960.1 41.739 230 113 6 2 229 18 228 9.48e-50 164
MsaG038413 AT4G09960.3 42.788 208 104 3 1 195 27 232 1.17e-49 164
MsaG038413 AT3G58780.4 54.795 146 63 2 1 145 16 159 7.36e-49 162
MsaG038413 AT4G22950.2 51.445 173 82 1 1 173 1 171 1.25e-48 158
MsaG038413 AT4G22950.3 52.047 171 80 1 1 171 1 169 7.29e-48 158
MsaG038413 AT4G22950.1 52.047 171 80 1 1 171 1 169 7.29e-48 158
MsaG038413 AT4G09960.2 44.500 200 98 5 1 195 1 192 2.74e-46 154
MsaG038413 AT2G45660.1 50.888 169 80 2 1 168 1 167 5.06e-46 153
MsaG038413 AT4G09960.4 42.453 212 103 4 1 195 96 305 7.09e-46 156
MsaG038413 AT2G45660.2 51.899 158 73 2 1 157 1 156 8.57e-45 148
MsaG038413 AT5G62165.3 48.837 172 79 4 1 168 1 167 1.24e-44 149
MsaG038413 AT5G62165.1 48.837 172 79 4 1 168 1 167 1.24e-44 149
MsaG038413 AT5G62165.2 48.837 172 79 4 1 168 1 167 1.24e-44 149
MsaG038413 AT3G30260.1 50.658 152 73 2 1 151 1 151 1.39e-44 150
MsaG038413 AT5G62165.17 49.689 161 72 4 1 157 1 156 4.91e-44 146
MsaG038413 AT5G62165.12 49.689 161 72 4 1 157 1 156 4.91e-44 146
MsaG038413 AT5G62165.11 49.689 161 72 4 1 157 1 156 4.91e-44 146
MsaG038413 AT4G11880.2 53.704 162 64 3 1 157 1 156 1.18e-43 146
MsaG038413 AT4G11880.3 53.704 162 64 3 1 157 1 156 1.18e-43 146
MsaG038413 AT3G57230.1 47.403 154 79 1 1 154 1 152 1.44e-41 142
MsaG038413 AT3G57230.4 47.403 154 79 1 1 154 1 152 1.44e-41 142
MsaG038413 AT4G11880.4 53.371 178 72 3 1 173 1 172 2.33e-41 141
MsaG038413 AT4G11880.1 53.371 178 72 3 1 173 1 172 2.33e-41 141
MsaG038413 AT5G62165.6 49.007 151 68 4 1 147 1 146 1.65e-40 137
MsaG038413 AT5G62165.9 49.007 151 68 4 1 147 1 146 1.65e-40 137
MsaG038413 AT5G62165.7 49.007 151 68 4 1 147 1 146 1.65e-40 137
MsaG038413 AT5G62165.8 49.007 151 68 4 1 147 1 146 1.65e-40 137
MsaG038413 AT5G62165.13 49.007 151 68 4 1 147 1 146 1.65e-40 137
MsaG038413 AT5G13790.2 47.429 175 83 3 1 173 1 168 3.16e-40 140
MsaG038413 AT3G57230.2 46.939 147 76 1 1 147 1 145 1.01e-39 135
MsaG038413 AT5G62165.10 47.205 161 76 4 1 157 1 156 4.24e-39 135
MsaG038413 AT5G62165.4 47.205 161 76 4 1 157 1 156 4.24e-39 135
MsaG038413 AT5G20240.1 42.197 173 92 2 1 173 1 165 5.93e-39 135
MsaG038413 AT5G13790.1 45.665 173 86 2 1 173 1 165 8.93e-39 136
MsaG038413 AT5G51860.2 42.286 175 95 3 1 172 1 172 3.90e-38 132
MsaG038413 AT5G51860.1 42.529 174 94 3 1 171 1 171 7.85e-38 132
MsaG038413 AT4G37940.1 43.312 157 87 1 1 157 1 155 2.80e-37 131
MsaG038413 AT5G20240.2 45.890 146 75 1 1 146 1 142 3.56e-37 128
MsaG038413 AT5G23260.2 42.262 168 95 1 1 168 1 166 8.38e-37 130
MsaG038413 AT5G23260.4 42.262 168 95 1 1 168 17 182 1.73e-36 130
MsaG038413 AT2G22630.1 44.099 161 87 2 1 161 1 158 1.85e-36 129
MsaG038413 AT2G22630.2 44.099 161 87 2 1 161 1 158 1.85e-36 129
MsaG038413 AT2G14210.1 45.860 157 84 1 1 157 1 156 3.63e-36 128
MsaG038413 AT2G14210.2 45.860 157 84 1 1 157 1 156 4.61e-36 128
MsaG038413 AT5G51870.1 42.105 171 93 3 1 168 1 168 1.20e-35 126
MsaG038413 AT4G37940.4 35.874 223 124 4 1 217 1 210 1.41e-35 126
MsaG038413 AT5G51870.4 42.105 171 93 3 1 168 1 168 2.17e-35 126
MsaG038413 AT5G51870.3 42.105 171 93 3 1 168 11 178 2.59e-35 126
MsaG038413 AT4G37940.3 44.755 143 77 1 1 143 1 141 8.67e-35 123
MsaG038413 AT3G57390.3 40.217 184 100 2 1 176 1 182 5.48e-34 122
MsaG038413 AT3G57390.1 40.217 184 100 2 1 176 1 182 7.31e-34 123
MsaG038413 AT4G24540.1 44.382 178 90 4 1 174 1 173 7.33e-34 122
MsaG038413 AT5G23260.1 41.667 168 91 2 1 168 17 177 2.36e-33 122
MsaG038413 AT5G23260.3 42.953 149 83 1 1 149 1 147 6.00e-33 120
MsaG038413 AT3G54340.1 40.678 177 93 3 1 173 1 169 1.38e-32 119
MsaG038413 AT5G51870.2 42.667 150 80 3 1 147 1 147 3.63e-32 116
MsaG038413 AT1G71692.1 41.530 183 98 2 1 175 1 182 3.68e-32 117
MsaG038413 AT5G51870.5 42.667 150 80 3 1 147 24 170 8.91e-32 115
MsaG038413 AT5G10140.4 41.212 165 86 4 1 162 1 157 1.38e-30 112
MsaG038413 AT5G62165.14 59.574 94 33 3 1 94 1 89 8.60e-30 108
MsaG038413 AT2G22540.3 42.690 171 93 3 1 169 1 168 1.78e-29 111
MsaG038413 AT2G22540.1 42.690 171 93 3 1 169 1 168 1.78e-29 111
MsaG038413 AT5G10140.2 41.447 152 81 3 1 152 1 144 4.48e-29 108
MsaG038413 AT5G10140.3 41.447 152 81 3 1 152 1 144 4.78e-29 108
MsaG038413 AT5G10140.1 41.447 152 81 3 1 152 1 144 8.42e-29 108
MsaG038413 AT5G65070.1 35.849 212 115 5 1 208 1 195 2.34e-28 107
MsaG038413 AT2G22540.2 41.954 174 85 4 1 169 1 163 1.22e-26 103
MsaG038413 AT5G65070.3 32.389 247 108 6 1 208 1 227 6.39e-26 101
MsaG038413 AT5G65050.2 38.095 168 96 2 1 168 1 160 9.13e-26 99.8
MsaG038413 AT5G65060.3 36.905 168 98 2 1 168 1 160 1.85e-25 99.4
MsaG038413 AT5G65060.1 36.905 168 98 2 1 168 1 160 2.00e-25 99.4
MsaG038413 AT5G65080.3 38.854 157 88 3 1 157 8 156 2.45e-25 99.0
MsaG038413 AT5G65050.3 38.095 168 96 2 1 168 1 160 2.49e-25 99.4
MsaG038413 AT5G65070.2 32.627 236 121 6 1 208 1 226 5.54e-25 99.4
MsaG038413 AT5G65050.1 38.889 162 88 3 1 162 1 151 8.02e-25 97.4
MsaG038413 AT1G77080.11 39.535 172 88 4 1 168 1 160 1.39e-24 96.7
MsaG038413 AT1G77080.4 39.881 168 93 2 1 168 1 160 2.53e-24 96.7
MsaG038413 AT1G77080.5 39.205 176 91 4 1 172 1 164 2.93e-24 95.9
MsaG038413 AT5G65070.4 39.474 152 76 4 1 148 1 140 3.78e-24 94.7
MsaG038413 AT5G65050.5 37.500 168 86 3 1 168 1 149 1.01e-23 94.7
MsaG038413 AT1G31140.1 36.898 187 95 4 1 173 1 178 1.26e-23 95.1
MsaG038413 AT5G65080.2 39.355 155 85 2 1 155 8 153 1.62e-23 94.7
MsaG038413 AT1G77980.1 39.080 174 93 5 1 163 1 172 1.75e-23 97.4
MsaG038413 AT5G65070.5 35.593 177 81 5 1 149 1 172 2.88e-23 94.4
MsaG038413 AT5G65060.2 36.310 168 88 3 1 168 1 149 4.21e-23 93.2
MsaG038413 AT1G22130.1 39.080 174 93 6 1 163 1 172 6.03e-23 95.9
MsaG038413 AT1G31140.2 35.000 180 110 2 1 173 1 180 8.76e-23 93.2
MsaG038413 AT1G77080.8 34.896 192 96 4 1 168 1 187 7.20e-22 90.9
MsaG038413 AT1G77080.2 38.095 168 92 2 1 168 1 156 7.94e-21 87.4
MsaG038413 AT1G77080.12 38.217 157 85 2 1 157 1 145 1.44e-19 82.8
MsaG038413 AT1G69120.3 45.283 106 57 1 64 168 1 106 2.15e-19 83.6
MsaG038413 AT1G77950.3 56.338 71 30 1 1 71 1 70 6.34e-19 83.6
MsaG038413 AT1G77950.2 56.338 71 30 1 1 71 1 70 6.34e-19 83.6
MsaG038413 AT1G77950.1 56.338 71 30 1 1 71 1 70 6.34e-19 83.6
MsaG038413 AT1G77950.4 56.338 71 30 1 1 71 1 70 6.34e-19 83.6
MsaG038413 AT5G60910.2 40.367 109 64 1 66 173 3 111 1.58e-17 78.2
MsaG038413 AT4G37435.1 37.931 145 74 5 1 136 1 138 4.94e-17 77.0
MsaG038413 AT1G65360.1 37.719 114 65 2 1 110 6 117 1.36e-16 76.6
MsaG038413 AT1G18750.4 46.479 71 38 0 1 71 1 71 1.80e-16 78.2
MsaG038413 AT1G18750.1 46.479 71 38 0 1 71 1 71 2.11e-16 78.2
MsaG038413 AT1G18750.3 46.479 71 38 0 1 71 1 71 2.62e-16 78.2
MsaG038413 AT1G01530.1 56.897 58 25 0 1 58 6 63 9.30e-15 72.0
MsaG038413 AT2G03060.3 41.333 75 44 0 1 75 1 75 2.28e-14 72.4
MsaG038413 AT2G03060.7 41.333 75 44 0 1 75 1 75 2.28e-14 72.4
MsaG038413 AT2G03060.1 41.333 75 44 0 1 75 1 75 2.28e-14 72.4
MsaG038413 AT2G03060.2 41.333 75 44 0 1 75 1 75 2.76e-14 72.0
MsaG038413 AT2G34440.1 34.286 105 65 2 1 105 1 101 2.93e-14 69.3
MsaG038413 AT4G18960.3 30.120 166 97 5 66 229 66 214 3.01e-14 70.5
MsaG038413 AT4G18960.2 30.120 166 97 5 66 229 66 214 3.01e-14 70.5
MsaG038413 AT1G72350.1 41.667 96 52 1 2 93 43 138 1.14e-13 68.6
MsaG038413 AT4G36590.1 44.944 89 44 1 2 90 7 90 1.24e-13 68.9
MsaG038413 AT1G47760.1 34.307 137 74 4 1 137 1 121 1.41e-13 67.4
MsaG038413 AT1G69540.1 40.000 75 44 1 1 75 1 74 3.43e-13 68.6
MsaG038413 AT1G69540.2 40.000 75 44 1 1 75 1 74 5.39e-13 68.2
MsaG038413 AT4G18960.4 33.945 109 71 1 66 173 66 174 6.90e-13 65.5
MsaG038413 AT5G60440.1 42.857 70 38 1 2 71 7 74 2.17e-12 65.9
MsaG038413 AT2G24840.1 45.070 71 37 1 1 71 62 130 3.02e-12 65.1
MsaG038413 AT2G26320.1 43.662 71 40 0 1 71 17 87 4.82e-12 61.6
MsaG038413 AT3G04100.1 31.034 174 97 6 2 161 14 178 1.77e-11 62.4
MsaG038413 AT3G66656.1 44.828 58 32 0 1 58 1 58 1.91e-11 61.6

Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGAACCTTTCTTGCAAAT+AGG 0.230762 7:+76297439 MsaT038413.1:CDS
CTGAACCTTTCTTGCAAATA+GGG 0.245189 7:+76297440 MsaT038413.1:CDS
GTCTCACCAACCATGTTCTT+TGG 0.286613 7:-76297638 None:intergenic
GGCAAGTTACTTTCTCAAAA+AGG 0.299277 7:+76292135 MsaT038413.1:CDS
CATTCTGCTACTGCTGTTGC+TGG 0.315087 7:+76297364 MsaT038413.1:CDS
TTTCAGCTTGAACATAGTTT+TGG 0.326976 7:-76297604 None:intergenic
CCTTTAGCTTTGACATCTCT+TGG 0.346911 7:-76296200 None:intergenic
ACAAATTATGATTGAACAAA+TGG 0.369368 7:+76296841 MsaT038413.1:CDS
GAATTTGCAAGCTCAACTTC+AGG 0.382243 7:+76292251 MsaT038413.1:CDS
GTTTATTACAGACACTTACT+AGG 0.391925 7:+76296591 MsaT038413.1:intron
TGTAGCTCTTTCATGTTCAA+TGG 0.408078 7:-76296627 None:intergenic
GAATACCCTATTTGCAAGAA+AGG 0.422478 7:-76297445 None:intergenic
GAGAAGTAAAAGAGCATCTC+TGG 0.424788 7:-76295959 None:intergenic
GAGACATAAATAAGCAACTT+AGG 0.433002 7:+76297147 MsaT038413.1:CDS
AATCTTGAGAAGCAACTTGA+AGG 0.438212 7:+76296651 MsaT038413.1:CDS
AGTTTGGCAGTCCATGGGAT+TGG 0.452143 7:-76297419 None:intergenic
TTTGCAAGAAAGGTTCAGTT+TGG 0.456100 7:-76297435 None:intergenic
AGGTTCAGTTTGGCAGTCCA+TGG 0.461998 7:-76297425 None:intergenic
GCTACTGCTGTTGCTGGAGG+AGG 0.462249 7:+76297370 MsaT038413.1:CDS
CACTTACTAGGGGAAGATCT+TGG 0.471152 7:+76296603 MsaT038413.1:CDS
TTGGTTTCAGAAGGCTGAAA+AGG 0.480640 7:-76297400 None:intergenic
ACATAGAACTGAGAGTTCAT+AGG 0.486655 7:-76292180 None:intergenic
GGATAGAAAACAAAATCAAC+CGG 0.486790 7:+76292114 MsaT038413.1:CDS
TTGCAGCATTGGCAAAACCT+TGG 0.491663 7:+76295929 MsaT038413.1:intron
TTAAAGCTATTGAAAGCTTG+TGG 0.492512 7:+76297332 MsaT038413.1:CDS
AATTTGCAAGCTCAACTTCA+GGG 0.494813 7:+76292252 MsaT038413.1:CDS
AAATAAGCAACTTAGGTTCA+AGG 0.497706 7:+76297154 MsaT038413.1:CDS
GAGGGAGGGTTGAACTGAAG+AGG 0.509739 7:+76292093 MsaT038413.1:CDS
TTTATTACAGACACTTACTA+GGG 0.510236 7:+76296592 MsaT038413.1:intron
CCAAGAGATGTCAAAGCTAA+AGG 0.523509 7:+76296200 MsaT038413.1:CDS
GCATCTCTGGTATCTTTCCA+AGG 0.530328 7:-76295946 None:intergenic
AAGGAGCTTTAGCACAAGCT+AGG 0.533560 7:+76296670 MsaT038413.1:CDS
ATGTTGCAGGAACGGCATCT+TGG 0.534730 7:+76297125 MsaT038413.1:intron
TTAATCATAGCATCCATCCT+TGG 0.540218 7:-76297670 None:intergenic
GCCTTCTGAAACCAATCCCA+TGG 0.545609 7:+76297408 MsaT038413.1:CDS
GGTTCAGTTTGGCAGTCCAT+GGG 0.545896 7:-76297424 None:intergenic
TCCATGGGATTGGTTTCAGA+AGG 0.552078 7:-76297409 None:intergenic
TGTTAATGAACATGAAACTC+AGG 0.559169 7:+76295992 MsaT038413.1:CDS
AGACTAGCTTTATCCAAGGA+TGG 0.580554 7:+76297657 MsaT038413.1:CDS
CTTTAGCACAAGCTAGGCAG+AGG 0.584115 7:+76296676 MsaT038413.1:CDS
TCTGCTACTGCTGTTGCTGG+AGG 0.585522 7:+76297367 MsaT038413.1:CDS
AGCACAAGCTAGGCAGAGGA+AGG 0.588463 7:+76296680 MsaT038413.1:CDS
ATCTAGTGCTCCAAAGAACA+TGG 0.599677 7:+76297628 MsaT038413.1:CDS
GGTGAGACTAGCTTTATCCA+AGG 0.618023 7:+76297653 MsaT038413.1:CDS
AGTGCTCCAAAGAACATGGT+TGG 0.621168 7:+76297632 MsaT038413.1:CDS
AATGGAAGAGCTTAAGACAA+AGG 0.632568 7:+76296859 MsaT038413.1:CDS
AGTCACTTCAAAAGTCACAA+AGG 0.671080 7:+76296232 MsaT038413.1:CDS
TTATTACAGACACTTACTAG+GGG 0.731608 7:+76296593 MsaT038413.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 76292086 76297688 76292086 ID=MsaG038413
Chr7 mRNA 76292086 76297688 76292086 ID=MsaT038413.1;Parent=MsaG038413
Chr7 exon 76292086 76292273 76292086 ID=MsaT038413.1.exon1;Parent=MsaT038413.1
Chr7 CDS 76292086 76292273 76292086 ID=cds.MsaT038413.1;Parent=MsaT038413.1
Chr7 exon 76295935 76296013 76295935 ID=MsaT038413.1.exon2;Parent=MsaT038413.1
Chr7 CDS 76295935 76296013 76295935 ID=cds.MsaT038413.1;Parent=MsaT038413.1
Chr7 exon 76296192 76296253 76296192 ID=MsaT038413.1.exon3;Parent=MsaT038413.1
Chr7 CDS 76296192 76296253 76296192 ID=cds.MsaT038413.1;Parent=MsaT038413.1
Chr7 exon 76296602 76296701 76296602 ID=MsaT038413.1.exon4;Parent=MsaT038413.1
Chr7 CDS 76296602 76296701 76296602 ID=cds.MsaT038413.1;Parent=MsaT038413.1
Chr7 exon 76296839 76296880 76296839 ID=MsaT038413.1.exon5;Parent=MsaT038413.1
Chr7 CDS 76296839 76296880 76296839 ID=cds.MsaT038413.1;Parent=MsaT038413.1
Chr7 exon 76297134 76297175 76297134 ID=MsaT038413.1.exon6;Parent=MsaT038413.1
Chr7 CDS 76297134 76297175 76297134 ID=cds.MsaT038413.1;Parent=MsaT038413.1
Chr7 exon 76297310 76297461 76297310 ID=MsaT038413.1.exon7;Parent=MsaT038413.1
Chr7 CDS 76297310 76297461 76297310 ID=cds.MsaT038413.1;Parent=MsaT038413.1
Chr7 exon 76297601 76297688 76297601 ID=MsaT038413.1.exon8;Parent=MsaT038413.1
Chr7 CDS 76297601 76297688 76297601 ID=cds.MsaT038413.1;Parent=MsaT038413.1
Gene Sequence

>MsaT038413.1

ATGGGTAGAGGGAGGGTTGAACTGAAGAGGATAGAAAACAAAATCAACCGGCAAGTTACTTTCTCAAAAAGGAGAAATGGTTTGCTGAAAAAAGCCTATGAACTCTCAGTTCTATGTGATGCTGAGATTGCTCTTATCATTTTCTCAAGTCGTGGAAAGCTTTCTGAATTTGCAAGCTCAACTTCAGGCATTGGCAAAACCTTGGAAAGATACCAGAGATGCTCTTTTACTTCTCAAAATGATAATGTTAATGAACATGAAACTCAGAACTGGTACCAAGAGATGTCAAAGCTAAAGGCAAAGTATGAGTCACTTCAAAAGTCACAAAGACACTTACTAGGGGAAGATCTTGGACCATTGAACATGAAAGAGCTACAAAATCTTGAGAAGCAACTTGAAGGAGCTTTAGCACAAGCTAGGCAGAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTAAGACAAAGGAACGGCATCTTGGAGACATAAATAAGCAACTTAGGTTCAAGCTTGAATCAGATGGATTTAATCTTAAAGCTATTGAAAGCTTGTGGAGCTCTACTCATTCTGCTACTGCTGTTGCTGGAGGAGGCAACTTTCCTTTTCAGCCTTCTGAAACCAATCCCATGGACTGCCAAACTGAACCTTTCTTGCAAATAGGGTACCAAAACTATGTTCAAGCTGAAACATCTAGTGCTCCAAAGAACATGGTTGGTGAGACTAGCTTTATCCAAGGATGGATGCTATGA
Protein sequence

>MsaT038413.1

MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFASSTSGIGKTLERYQRCSFTSQNDNVNEHETQNWYQEMSKLKAKYESLQKSQRHLLGEDLGPLNMKELQNLEKQLEGALAQARQRKTQIMIEQMEELKTKERHLGDINKQLRFKLESDGFNLKAIESLWSSTHSATAVAGGGNFPFQPSETNPMDCQTEPFLQIGYQNYVQAETSSAPKNMVGETSFIQGWML*