AlfalfaGEDB | MsaG038490

M. sativa ssp. caerulea / MsaG038490

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038490	XP_013453691.1	63.784	185	12	3	1	130	1	185	1.47e-55	186

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038490	sp\|Q9LSL1\|BH093_ARATH	75.472	53	11	1	80	130	155	207	1.15e-12	67.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038490	tr\|A0A072UDL7\|A0A072UDL7_MEDTR	63.784	185	12	3	1	130	1	185	7.03e-56	186

TFs/TRs:

Gene ID	Type	Classification
MsaG038490	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038490	MtrunA17_Chr5g0411541	63.784	185	12	3	1	130	1	185	1.96e-59	186
MsaG038490	MtrunA17_Chr3g0141091	53.191	94	35	3	46	130	109	202	2.70e-15	71.2
MsaG038490	MtrunA17_Chr3g0131691	64.000	50	14	1	81	130	282	327	4.30e-12	62.4
MsaG038490	MtrunA17_Chr7g0252041	84.375	32	5	0	99	130	284	315	4.64e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038490	AT5G65640.2	75.472	53	11	1	80	130	155	207	6.27e-14	67.4
MsaG038490	AT5G65640.1	75.472	53	11	1	80	130	155	207	1.17e-13	67.0
MsaG038490	AT1G12860.3	78.947	38	8	0	99	136	265	302	4.64e-12	62.4
MsaG038490	AT3G26744.5	84.848	33	5	0	99	131	305	337	1.33e-11	61.2
MsaG038490	AT3G26744.1	84.375	32	5	0	99	130	305	336	5.38e-11	59.7
MsaG038490	AT3G26744.4	84.375	32	5	0	99	130	305	336	5.38e-11	59.7
MsaG038490	AT3G26744.2	84.375	32	5	0	99	130	305	336	5.38e-11	59.7
MsaG038490	AT3G26744.6	84.375	32	5	0	99	130	305	336	5.94e-11	59.3
MsaG038490	AT1G12860.1	84.375	32	5	0	99	130	265	296	5.98e-11	59.3
MsaG038490	AT1G12860.2	84.375	32	5	0	99	130	265	296	6.94e-11	59.3
MsaG038490	AT5G10570.1	79.070	43	9	0	88	130	138	180	8.41e-11	58.9

Find 29 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGCCGTCCTTCAACCCTTT+TGG	0.271608	7:-77083255	None:intergenic
AGTATAGAGTTTGGATTTGT+TGG	0.301074	7:+77083122	MsaT038490.1:CDS
AGTGACACCTTGCTGATCTT+AGG	0.318974	7:-77083353	None:intergenic
TGGAAGTGAGAACAAGAGTT+TGG	0.348911	7:+77083142	MsaT038490.1:CDS
CTTTCTTGCTGTGGTAAAAC+TGG	0.352353	7:-77083101	None:intergenic
CAGCAAGAAAGTATAGAGTT+TGG	0.356994	7:+77083113	MsaT038490.1:CDS
AATGAGTTAATACTCCCTAA+TGG	0.401034	7:+77082907	MsaT038490.1:CDS
ACGGCCTTCAAAGAATCTTA+TGG	0.423564	7:+77083271	MsaT038490.1:CDS
GAAGAAAGCGTTTGAATGAC+AGG	0.430541	7:+77083306	MsaT038490.1:CDS
AGTCAAAGGTCCAACCATTA+GGG	0.456761	7:-77082921	None:intergenic
TCAGCCATAAGATTCTTTGA+AGG	0.463412	7:-77083275	None:intergenic
GTGACACCTTGCTGATCTTA+GGG	0.466467	7:-77083352	None:intergenic
AAAATGGAACTTTCTCAACT+TGG	0.469304	7:+77082829	None:intergenic
AGTTTGGAACAAAGTAAAAT+CGG	0.479256	7:+77083158	MsaT038490.1:CDS
ATGACAGGCTTTCCATGCTT+AGG	0.479470	7:+77083321	MsaT038490.1:CDS
GCCAAATCCAAAAGGGTTGA+AGG	0.489270	7:+77083248	MsaT038490.1:CDS
CACAAACCCATGTTAAAGAC+TGG	0.505791	7:-77083212	None:intergenic
TATTAACTCATTCAAAACAT+TGG	0.513404	7:-77082896	None:intergenic
CAAAGAATCTTATGGCTGAA+AGG	0.515993	7:+77083279	MsaT038490.1:CDS
GAGACTCCAGTCTTTAACAT+GGG	0.538936	7:+77083206	MsaT038490.1:CDS
AACTCTATACTTTCTTGCTG+TGG	0.547442	7:-77083110	None:intergenic
TTGATGATTCTCAGTTCCTG+AGG	0.556181	7:+77083064	MsaT038490.1:intron
AAGATCAGCAAGGTGTCACT+AGG	0.558295	7:+77083356	MsaT038490.1:CDS
GGTGCTGAATCATCAACCTC+AGG	0.571254	7:-77083080	None:intergenic
TAAAATCGGCTGCAAAGTTG+AGG	0.590576	7:+77083172	MsaT038490.1:CDS
TGAGACTCCAGTCTTTAACA+TGG	0.608396	7:+77083205	MsaT038490.1:CDS
AATCCAAAAGGGTTGAAGGA+CGG	0.613450	7:+77083252	MsaT038490.1:CDS
AGGGACAATTGACCTAAGCA+TGG	0.627542	7:-77083333	None:intergenic
AATTGTCCCTAAGATCAGCA+AGG	0.709185	7:+77083346	MsaT038490.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	77082832	77083409	77082832	ID=MsaG038490
Chr7	mRNA	77082832	77083409	77082832	ID=MsaT038490.1;Parent=MsaG038490
Chr7	exon	77082832	77082928	77082832	ID=MsaT038490.1.exon1;Parent=MsaT038490.1
Chr7	CDS	77082832	77082928	77082832	ID=cds.MsaT038490.1;Parent=MsaT038490.1
Chr7	exon	77083078	77083409	77083078	ID=MsaT038490.1.exon2;Parent=MsaT038490.1
Chr7	CDS	77083078	77083409	77083078	ID=cds.MsaT038490.1;Parent=MsaT038490.1

Gene Sequence

>MsaT038490.1

ATGGAACTTTCTCAACTTGGTTTTCTTGAGGAGCTACTAGCTCCAAGAAAAGACACATGTTTATCCAATGTTTTGAATGAGTTAATACTCCCTAATGTTCCTGAGGTTGATGATTCAGCACCAGTTTTACCACAGCAAGAAAGTATAGAGTTTGGATTTGTTGGAAGTGAGAACAAGAGTTTGGAACAAAGTAAAATCGGCTGCAAAGTTGAGGAACAAGTTAGTGAGACTCCAGTCTTTAACATGGGTTTGTGTGATGAGAAAAAAGCCAAATCCAAAAGGGTTGAAGGACGGCCTTCAAAGAATCTTATGGCTGAAAGGAGAAGAAGAAAGCGTTTGAATGACAGGCTTTCCATGCTTAGGTCAATTGTCCCTAAGATCAGCAAGGTGTCACTAGGCCAATTGCCAAATAAAATATATATAGTTTGA

Protein sequence

>MsaT038490.1

MELSQLGFLEELLAPRKDTCLSNVLNELILPNVPEVDDSAPVLPQQESIEFGFVGSENKSLEQSKIGCKVEEQVSETPVFNMGLCDEKKAKSKRVEGRPSKNLMAERRRRKRLNDRLSMLRSIVPKISKVSLGQLPNKIYIV*