AlfalfaGEDB | MsaG038517

M. sativa ssp. caerulea / MsaG038517

KEGG: K14500
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038517	XP_024625394.1	99.187	492	4	0	1	492	1	492	0.0	1026

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038517	sp\|Q8W4L3\|BSK3_ARATH	77.778	486	105	3	1	486	1	483	0.0	795

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038517	tr\|G7L3M7\|G7L3M7_MEDTR	99.187	492	4	0	1	492	1	492	0.0	1026

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG010076	MsaG038517	0.807259	9.367200e-50	1.497519e-47
MsaG020297	MsaG038517	0.803627	5.363699e-49	7.876817e-47
MsaG037417	MsaG038517	0.869437	6.287894e-66	7.116827e-63
MsaG038517	MsaG011701	0.804325	3.847689e-49	5.742827e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038517	MtrunA17_Chr7g0247441	99.187	492	4	0	1	492	1	492	0.0	1026
MsaG038517	MtrunA17_Chr8g0349041	84.553	492	75	1	1	492	1	491	0.0	879
MsaG038517	MtrunA17_Chr8g0386761	76.151	478	112	2	11	487	12	488	0.0	764
MsaG038517	MtrunA17_Chr4g0032361	68.776	490	149	2	1	486	1	490	0.0	711
MsaG038517	MtrunA17_Chr5g0448561	63.519	466	161	4	28	485	53	517	0.0	608
MsaG038517	MtrunA17_Chr4g0054861	61.419	451	171	1	39	486	43	493	0.0	592
MsaG038517	MtrunA17_Chr4g0008911	72.460	374	100	1	1	371	1	374	0.0	568
MsaG038517	MtrunA17_Chr2g0328731	54.698	298	76	6	78	372	2	243	3.35e-102	306
MsaG038517	MtrunA17_Chr2g0328171	36.086	327	171	10	19	314	41	360	2.88e-51	179
MsaG038517	MtrunA17_Chr4g0031571	34.539	304	167	9	40	314	79	379	2.39e-45	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG038517	AT4G00710.1	77.778	486	105	3	1	486	1	483	795
MsaG038517	AT4G00710.2	77.778	486	105	3	1	486	1	483	795
MsaG038517	AT5G41260.1	75.926	486	116	1	1	486	1	485	788
MsaG038517	AT1G63500.1	75.926	486	116	1	1	486	1	485	777
MsaG038517	AT5G59010.1	71.166	489	134	2	1	486	1	485	734
MsaG038517	AT3G54030.1	68.839	491	144	3	1	486	1	487	704
MsaG038517	AT1G01740.2	68.247	485	145	4	1	485	1	476	673
MsaG038517	AT1G01740.1	68.247	485	145	4	1	485	1	476	673
MsaG038517	AT1G01740.5	66.804	485	144	3	1	485	1	468	657
MsaG038517	AT4G35230.1	65.188	451	152	2	39	485	56	505	619

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Find 106 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAGGATTGTTGTTAAG+AGG	0.421429	7:+77241423	MsaT038517.1:CDS
AAAGTCGATAGTGGCTGCTT+TGG	0.425243	7:+77244630	MsaT038517.1:CDS
AACGTAAATTCCCGAAATGA+AGG	0.506432	7:-77241296	None:intergenic
AAGACGCAATGTGCCATAGA+GGG	0.566632	7:-77246028	None:intergenic
AAGCTATATATTACACTTTC+TGG	0.168273	7:-77244154	None:intergenic
AATAAGATGACTTACATGAC+TGG	0.525733	7:-77244221	None:intergenic
AATAGAATTGAGACCAATGA+TGG	0.540362	7:+77241272	MsaT038517.1:CDS
AATCCTAGGCTTTCAAGTTT+TGG	0.260615	7:+77242986	MsaT038517.1:CDS
AATGCTCACAGATTCTTGTC+TGG	0.425641	7:+77244519	MsaT038517.1:CDS
AATGTGGACGGATCAAATGC+AGG	0.570332	7:+77245308	MsaT038517.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	77241090	77246163	77241090	ID=MsaG038517
Chr7	mRNA	77241090	77246163	77241090	ID=MsaT038517.1;Parent=MsaG038517
Chr7	exon	77241090	77241171	77241090	ID=MsaT038517.1.exon1;Parent=MsaT038517.1
Chr7	CDS	77241090	77241171	77241090	ID=cds.MsaT038517.1;Parent=MsaT038517.1
Chr7	exon	77241264	77241484	77241264	ID=MsaT038517.1.exon2;Parent=MsaT038517.1
Chr7	CDS	77241264	77241484	77241264	ID=cds.MsaT038517.1;Parent=MsaT038517.1
Chr7	exon	77242094	77242229	77242094	ID=MsaT038517.1.exon3;Parent=MsaT038517.1
Chr7	CDS	77242094	77242229	77242094	ID=cds.MsaT038517.1;Parent=MsaT038517.1
Chr7	exon	77242763	77242896	77242763	ID=MsaT038517.1.exon4;Parent=MsaT038517.1
Chr7	CDS	77242763	77242896	77242763	ID=cds.MsaT038517.1;Parent=MsaT038517.1
Chr7	exon	77242980	77243085	77242980	ID=MsaT038517.1.exon5;Parent=MsaT038517.1
Chr7	CDS	77242980	77243085	77242980	ID=cds.MsaT038517.1;Parent=MsaT038517.1
Chr7	exon	77244143	77244228	77244143	ID=MsaT038517.1.exon6;Parent=MsaT038517.1
Chr7	CDS	77244143	77244228	77244143	ID=cds.MsaT038517.1;Parent=MsaT038517.1
Chr7	exon	77244487	77244675	77244487	ID=MsaT038517.1.exon7;Parent=MsaT038517.1
Chr7	CDS	77244487	77244675	77244487	ID=cds.MsaT038517.1;Parent=MsaT038517.1
Chr7	exon	77244960	77245115	77244960	ID=MsaT038517.1.exon8;Parent=MsaT038517.1
Chr7	CDS	77244960	77245115	77244960	ID=cds.MsaT038517.1;Parent=MsaT038517.1
Chr7	exon	77245297	77245410	77245297	ID=MsaT038517.1.exon9;Parent=MsaT038517.1
Chr7	CDS	77245297	77245410	77245297	ID=cds.MsaT038517.1;Parent=MsaT038517.1
Chr7	exon	77245909	77246163	77245909	ID=MsaT038517.1.exon10;Parent=MsaT038517.1
Chr7	CDS	77245909	77246163	77245909	ID=cds.MsaT038517.1;Parent=MsaT038517.1

Gene Sequence

>MsaT038517.1

ATGGGGATTCAGTGCTCCAGCTTGATACCATGTTGTGTGGACTCACAAGTTAAAGCATCTGTTCCTGAAGTTCCAGATGCTGAAAATGAGAATAGAATTGAGACCAATGATGGACCTTCATTTCGGGAATTTACGTTGGAGCAACTTAATAACGCAACGTCCGGTTTTAATGTTGAGAATATAGTTTCTGAACATGGAGAAAAGGCTCCAAATGTTGTTTATAAAGGGAAGATGGAGAATCAAACGAGGATTGTTGTTAAGAGGTTTAACAGAAGTGCTTGGCCCGATGCTCGTCAGTTTTTGGAGGAAGCTAGATCGGTCGGTCAGCTTCGTAGCGAAAGATTGGCAAATTTGCTTGGATGTTGTTGTGAAGACGATGAGAGGTTGCTTGTGGCTGAATATATGCCAAACGAAACACTTGCAAAACACCTTTTCCACTGGGATTCTCAACCGATGAAATGGGCAATGCGACTCAGAGTTGTTCTACATCTTGCAGAAGCTCTAGAATACTGCACAAGCAATGGTCGTGCCCTCTATCATGACCTTAATGCATATAGAGTTCTATTTGATGAGGACGGTAATCCTAGGCTTTCAAGTTTTGGCCTTATGAAGAATAGTAGGGACGGAAAAAGTTATAGCACAAATTTGGCGTTTACTCCTCCAGAGTATCTCAGAACTGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTTCTTAGTGGGAAGCATATCCCTCCCAGTCATGCCCTTGATTTGATTCGCGACAGAAATATTCAAATGCTCACAGATTCTTGTCTGGAAGGACAATTTTCTGAAGATGATGGGACTGAGTTGGTGCGGTTGGCATCTCGTTGTTTACAGTATGAACCTAGAGAACGACCTAATACAAAGTCGATAGTGGCTGCTTTGGCTCCTCTTCAAAAAGAAACAGAGGTTCCTTCCCACTCATTGATGGGTATCCAACATAGTGCTACTATTGCTGCTTCGTTGTCCCCACTTGGCGATGCATGTTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTCGAAAATATTGGTTATAAAGATGATGATGGAGTGGCAAATGAGTTATCTTTCCAAATGTGGACGGATCAAATGCAGGACTCACTAAATTGTAAGCAAAAAGGGGACGCTGCGTTCCGGCACAAAGACTTCAAACTTGCAATAGAGTGCTACACACAGTTCATTGACGTTGGAACAATGGTTTCTCCAACTGTTCACGCACGTCGCAGCTTGTGTTACCTCATTAACGACATGCCTCAAGAAGCAATGAACGACGCGATGCAAGCACAAGTAATTTCCCCTCTATGGCACATTGCGTCTTATCTTCAATCTGTTTCTTTGTATGGGCTAGGGATGGTGAACGAAGCGCAAGTCGCACTTATGGAGGGAACAACGCTGGAAGAGAAACGAAACACACCTACCGGAAAAAAGTGA

Protein sequence

>MsaT038517.1

MGIQCSSLIPCCVDSQVKASVPEVPDAENENRIETNDGPSFREFTLEQLNNATSGFNVENIVSEHGEKAPNVVYKGKMENQTRIVVKRFNRSAWPDARQFLEEARSVGQLRSERLANLLGCCCEDDERLLVAEYMPNETLAKHLFHWDSQPMKWAMRLRVVLHLAEALEYCTSNGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLTDSCLEGQFSEDDGTELVRLASRCLQYEPRERPNTKSIVAALAPLQKETEVPSHSLMGIQHSATIAASLSPLGDACSRKDLTAIHEVLENIGYKDDDGVANELSFQMWTDQMQDSLNCKQKGDAAFRHKDFKLAIECYTQFIDVGTMVSPTVHARRSLCYLINDMPQEAMNDAMQAQVISPLWHIASYLQSVSLYGLGMVNEAQVALMEGTTLEEKRNTPTGKK*