Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG038565 | XP_013449346.1 | 97.167 | 600 | 17 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG038565 | sp|Q84JT7|ARID1_ARATH | 42.042 | 333 | 151 | 8 | 234 | 555 | 229 | 530 | 3.71e-66 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG038565 | tr|Q2HUC6|Q2HUC6_MEDTR | 97.167 | 600 | 17 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1206 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG038565 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG038565 | MtrunA17_Chr7g0248041 | 97.167 | 600 | 17 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1206 |
| MsaG038565 | MtrunA17_Chr8g0387141 | 34.891 | 599 | 288 | 16 | 1 | 578 | 67 | 584 | 9.51e-91 | 292 |
| MsaG038565 | MtrunA17_Chr8g0348691 | 50.190 | 263 | 111 | 6 | 323 | 568 | 1 | 260 | 3.32e-77 | 245 |
| MsaG038565 | MtrunA17_Chr8g0387181 | 35.572 | 402 | 199 | 9 | 231 | 578 | 221 | 616 | 3.51e-68 | 233 |
| MsaG038565 | MtrunA17_Chr8g0387181 | 57.377 | 61 | 26 | 0 | 1 | 61 | 60 | 120 | 2.69e-12 | 69.7 |
| MsaG038565 | MtrunA17_Chr8g0387161 | 36.615 | 325 | 161 | 5 | 259 | 578 | 1 | 285 | 5.82e-65 | 214 |
| MsaG038565 | MtrunA17_Chr1g0186281 | 47.917 | 192 | 100 | 0 | 386 | 577 | 381 | 572 | 2.73e-57 | 202 |
| MsaG038565 | MtrunA17_Chr1g0186281 | 52.308 | 65 | 31 | 0 | 1 | 65 | 69 | 133 | 3.15e-12 | 69.3 |
| MsaG038565 | MtrunA17_Chr1g0186261 | 46.354 | 192 | 103 | 0 | 386 | 577 | 384 | 575 | 2.21e-55 | 197 |
| MsaG038565 | MtrunA17_Chr1g0186261 | 52.308 | 65 | 31 | 0 | 1 | 65 | 69 | 133 | 3.97e-11 | 65.9 |
| MsaG038565 | MtrunA17_Chr1g0186191 | 33.053 | 357 | 197 | 5 | 255 | 577 | 234 | 582 | 1.70e-54 | 195 |
| MsaG038565 | MtrunA17_Chr1g0186191 | 53.846 | 65 | 30 | 0 | 1 | 65 | 83 | 147 | 2.07e-12 | 70.1 |
| MsaG038565 | MtrunA17_Chr8g0348681 | 37.195 | 328 | 174 | 9 | 8 | 318 | 16 | 328 | 5.98e-48 | 171 |
| MsaG038565 | MtrunA17_Chr6g0479271 | 32.588 | 313 | 180 | 9 | 183 | 483 | 2 | 295 | 5.91e-31 | 123 |
| MsaG038565 | MtrunA17_Chr3g0086341 | 37.037 | 189 | 106 | 4 | 378 | 555 | 140 | 326 | 1.86e-30 | 125 |
| MsaG038565 | MtrunA17_Chr7g0241681 | 37.870 | 169 | 92 | 3 | 383 | 540 | 190 | 356 | 2.73e-30 | 122 |
| MsaG038565 | MtrunA17_Chr7g0241661 | 32.159 | 227 | 135 | 8 | 324 | 534 | 114 | 337 | 1.50e-20 | 93.6 |
| MsaG038565 | MtrunA17_Chr5g0420461 | 37.234 | 94 | 40 | 1 | 390 | 483 | 90 | 164 | 1.90e-13 | 69.3 |
| MsaG038565 | MtrunA17_Chr6g0453251 | 50.000 | 58 | 29 | 0 | 1 | 58 | 67 | 124 | 7.73e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG038565 | AT2G46040.3 | 42.042 | 333 | 151 | 8 | 234 | 555 | 229 | 530 | 3.77e-67 | 229 |
| MsaG038565 | AT2G46040.1 | 42.042 | 333 | 151 | 8 | 234 | 555 | 229 | 530 | 3.77e-67 | 229 |
| MsaG038565 | AT2G46040.2 | 42.042 | 333 | 151 | 8 | 234 | 555 | 243 | 544 | 4.41e-67 | 229 |
| MsaG038565 | AT4G11400.2 | 39.823 | 339 | 175 | 7 | 251 | 566 | 218 | 550 | 3.19e-63 | 218 |
| MsaG038565 | AT4G11400.1 | 39.823 | 339 | 175 | 7 | 251 | 566 | 218 | 550 | 3.19e-63 | 218 |
| MsaG038565 | AT5G04110.1 | 40.805 | 174 | 91 | 4 | 387 | 549 | 361 | 533 | 9.61e-34 | 135 |
| MsaG038565 | AT5G04110.3 | 40.805 | 174 | 91 | 4 | 387 | 549 | 361 | 533 | 9.61e-34 | 135 |
| MsaG038565 | AT5G04110.2 | 40.805 | 174 | 91 | 4 | 387 | 549 | 362 | 534 | 9.89e-34 | 135 |
| MsaG038565 | AT2G03470.2 | 31.818 | 286 | 165 | 8 | 286 | 555 | 24 | 295 | 2.07e-31 | 127 |
| MsaG038565 | AT2G03470.1 | 31.707 | 287 | 165 | 8 | 286 | 555 | 24 | 296 | 2.63e-31 | 127 |
| MsaG038565 | AT1G13880.1 | 35.000 | 200 | 110 | 5 | 383 | 569 | 124 | 316 | 2.33e-26 | 112 |
| MsaG038565 | AT1G13880.3 | 35.000 | 200 | 110 | 5 | 383 | 569 | 125 | 317 | 2.40e-26 | 112 |
| MsaG038565 | AT1G13880.2 | 35.000 | 200 | 110 | 5 | 383 | 569 | 134 | 326 | 2.69e-26 | 112 |
| MsaG038565 | AT1G26580.3 | 35.204 | 196 | 108 | 4 | 378 | 555 | 60 | 254 | 3.50e-26 | 112 |
| MsaG038565 | AT1G26580.2 | 35.204 | 196 | 108 | 4 | 378 | 555 | 126 | 320 | 6.05e-26 | 112 |
| MsaG038565 | AT1G26580.1 | 35.204 | 196 | 108 | 4 | 378 | 555 | 126 | 320 | 6.05e-26 | 112 |
| MsaG038565 | AT5G04110.4 | 40.690 | 145 | 74 | 4 | 387 | 520 | 361 | 504 | 2.79e-25 | 110 |
Find 150 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGCTTGATAGATGTTTC+TGG | 0.140839 | 7:-77876397 | MsaT038565.1:CDS |
| TTATCTCCATTGCAGAATTT+TGG | 0.184734 | 7:+77879580 | None:intergenic |
| GTCTAAATTCCACTGGTAAA+AGG | 0.214752 | 7:+77876499 | None:intergenic |
| GGCGTTGGCTGTGGCTTCTT+AGG | 0.242383 | 7:+77876167 | None:intergenic |
| CTCTCTTTATTAACACTAGA+TGG | 0.242913 | 7:+77879447 | None:intergenic |
| TCCTTCACTCTCAACTTTCT+TGG | 0.243171 | 7:+77879665 | None:intergenic |
| AAACTTTCCCTGCTCTTCTT+AGG | 0.251694 | 7:+77876353 | None:intergenic |
| AATCGTAAAATCCGAACTTT+TGG | 0.277183 | 7:-77876645 | MsaT038565.1:CDS |
| GATTTGGTTGGGGAAGAATA+TGG | 0.301512 | 7:-77880062 | MsaT038565.1:CDS |
| AAGAGAGCTTTGGTCGTAAA+AGG | 0.302198 | 7:-77879431 | MsaT038565.1:CDS |
| AAATTCTGCAATGGAGATAA+TGG | 0.316341 | 7:-77879577 | MsaT038565.1:CDS |
| ATTCGGGCACTTCAGCTTGA+TGG | 0.324498 | 7:+77876729 | None:intergenic |
| CACGAATCTTGTGTCTAATA+TGG | 0.325526 | 7:-77879688 | MsaT038565.1:CDS |
| ACACCATTGAAGGGTGCTTT+TGG | 0.331159 | 7:-77876230 | MsaT038565.1:CDS |
| GGCACTTCAGCTTGATGGTT+TGG | 0.334418 | 7:+77876734 | None:intergenic |
| GCTAGACTCAAGCTGGAAAT+AGG | 0.340184 | 7:-77876527 | MsaT038565.1:CDS |
| GGAGCGTTTAACGGAGTTGC+AGG | 0.344592 | 7:-77879904 | MsaT038565.1:CDS |
| TGGGCGATAGAGTTAAGTTT+GGG | 0.351590 | 7:-77879926 | MsaT038565.1:CDS |
| GCGTTGGCTGTGGCTTCTTA+GGG | 0.354312 | 7:+77876168 | None:intergenic |
| GTGGGCGATAGAGTTAAGTT+TGG | 0.357837 | 7:-77879927 | MsaT038565.1:CDS |
| ATGAGTTGTGGGATTTGGTT+GGG | 0.366912 | 7:-77880073 | MsaT038565.1:CDS |
| AATCCTTGTGATCCTGTGTT+AGG | 0.370694 | 7:-77879354 | MsaT038565.1:CDS |
| TAAGAATGAGTTGTGGGATT+TGG | 0.371336 | 7:-77880078 | MsaT038565.1:CDS |
| GTGAGTTGTGCCAGTCCATT+CGG | 0.372553 | 7:+77876712 | None:intergenic |
| TCATCACTGTCAATGTTATC+AGG | 0.372585 | 7:+77876269 | None:intergenic |
| TTCGCTTGATAGATGTTTCT+GGG | 0.372715 | 7:-77876396 | MsaT038565.1:CDS |
| GACATCATCGCCACTTTCAT+TGG | 0.385220 | 7:+77879482 | None:intergenic |
| AGTGGCTGGGAACTCAAATA+TGG | 0.387174 | 7:-77876676 | MsaT038565.1:CDS |
| CAATGCCTGAAAAGTCAAAA+TGG | 0.398546 | 7:-77879329 | MsaT038565.1:CDS |
| TGGCTTCTTAGGGGATAATA+AGG | 0.401536 | 7:+77876178 | None:intergenic |
| GAGTTGGTGTTGGATGATTA+TGG | 0.401674 | 7:-77879879 | MsaT038565.1:CDS |
| TTCATGCCGTTGCCAGGTAC+AGG | 0.406356 | 7:-77876591 | MsaT038565.1:CDS |
| AGATTTGTATAAGCTGTTCA+TGG | 0.410254 | 7:-77880135 | MsaT038565.1:CDS |
| GTTGGGGAAGAATATGGGTT+GGG | 0.412314 | 7:-77880056 | MsaT038565.1:CDS |
| TAGAGTGAAGGTTGTGAATC+CGG | 0.413505 | 7:-77879790 | MsaT038565.1:CDS |
| TATCAGGAGTATGCCTGTTC+TGG | 0.414090 | 7:+77876285 | None:intergenic |
| GATGAAGTCAAGAGTGTATA+CGG | 0.415499 | 7:-77879840 | MsaT038565.1:CDS |
| GGGAAGAAGTGAGGCGATGC+TGG | 0.415602 | 7:-77876469 | MsaT038565.1:CDS |
| GGTGCATCAAGAATTGATTC+TGG | 0.415723 | 7:+77876782 | None:intergenic |
| AGGTTCCCCTTCCAAAAGTT+CGG | 0.417302 | 7:+77876634 | None:intergenic |
| ATTTGGTTGGGGAAGAATAT+GGG | 0.421040 | 7:-77880061 | MsaT038565.1:CDS |
| AACGGATCAAACGTGACAAT+GGG | 0.422576 | 7:-77876886 | MsaT038565.1:CDS |
| GATTATGGTGAGGGAGATGT+CGG | 0.423212 | 7:-77879864 | MsaT038565.1:CDS |
| CCTTTGAAGAATGTCGTTGA+TGG | 0.425457 | 7:-77879972 | MsaT038565.1:CDS |
| TGAGTTGTGCCAGTCCATTC+GGG | 0.426236 | 7:+77876713 | None:intergenic |
| CAAGAGTGATTCTAAGTGGC+TGG | 0.427819 | 7:-77876690 | MsaT038565.1:CDS |
| CGATGTCAGAAATGCAAAGT+TGG | 0.431021 | 7:-77879395 | MsaT038565.1:CDS |
| GGGTGTGAAAGTTGGTTCTT+CGG | 0.433272 | 7:-77880036 | MsaT038565.1:CDS |
| AAAGAGATCTAGAAAATGTT+GGG | 0.435560 | 7:-77880173 | None:intergenic |
| AAGGTATATGAGTACATTGA+TGG | 0.435788 | 7:-77879744 | MsaT038565.1:CDS |
| TAAGTTTGGGGAGCGTTTAA+CGG | 0.437682 | 7:-77879913 | MsaT038565.1:CDS |
| ACAATGAAGCTCATGATTTG+AGG | 0.438613 | 7:+77876114 | None:intergenic |
| AACGGAGTTGCAGGCGGAGT+TGG | 0.440717 | 7:-77879895 | MsaT038565.1:CDS |
| AAACATCTATCAAGCGAAGC+AGG | 0.442525 | 7:+77876401 | None:intergenic |
| ATTATGGTGAGGGAGATGTC+GGG | 0.443986 | 7:-77879863 | MsaT038565.1:CDS |
| ATCGGAATTTACACCATTGA+AGG | 0.444707 | 7:-77876240 | MsaT038565.1:CDS |
| GTTCCCGAAGCGTGATTTAG+TGG | 0.446072 | 7:-77879946 | MsaT038565.1:CDS |
| CAACATTTCCTAAGAAGAGC+AGG | 0.455515 | 7:-77876361 | MsaT038565.1:CDS |
| AGTGTTAATAAAGAGAGCTT+TGG | 0.458202 | 7:-77879441 | MsaT038565.1:CDS |
| CGCCCACTAAATCACGCTTC+GGG | 0.472395 | 7:+77879943 | None:intergenic |
| GATGTAGCAAACAGCATGCC+TGG | 0.473778 | 7:-77879543 | MsaT038565.1:CDS |
| TTTGTATGTGGCGTTGGCTG+TGG | 0.473835 | 7:+77876158 | None:intergenic |
| TCGCCCACTAAATCACGCTT+CGG | 0.475900 | 7:+77879942 | None:intergenic |
| CCCAAGGTTATCATCATACA+TGG | 0.476856 | 7:+77876928 | None:intergenic |
| ACAAGATTCATGCCGTTGCC+AGG | 0.482217 | 7:-77876597 | MsaT038565.1:CDS |
| TGACAGTGATGATGAAGAAT+CGG | 0.482629 | 7:-77876258 | MsaT038565.1:CDS |
| CTTACGGTAATCATGAGATC+TGG | 0.482890 | 7:-77879302 | MsaT038565.1:CDS |
| TCTTGTCTTCCCTTTCCGAC+AGG | 0.485818 | 7:+77876614 | None:intergenic |
| CAGCCAACGCCACATACAAA+AGG | 0.491192 | 7:-77876155 | MsaT038565.1:CDS |
| AATGAGTTGTGGGATTTGGT+TGG | 0.494085 | 7:-77880074 | MsaT038565.1:CDS |
| ACTAGTTGACGTGCTTATGC+AGG | 0.495122 | 7:-77879643 | MsaT038565.1:CDS |
| CAGTGGAATTTAGACAAAGC+AGG | 0.497895 | 7:-77876491 | MsaT038565.1:CDS |
| GCTGAAGTGCCCGAATGGAC+TGG | 0.499421 | 7:-77876722 | MsaT038565.1:CDS |
| AAGTCAAAATGGAAGTCTTA+CGG | 0.503873 | 7:-77879318 | MsaT038565.1:CDS |
| TCAAGAGTGTATACGGATGT+AGG | 0.504450 | 7:-77879833 | MsaT038565.1:CDS |
| AGCGCAGAGGATACCAGAAC+AGG | 0.504565 | 7:-77876298 | MsaT038565.1:CDS |
| TATGGGTTGGGTGTGAAAGT+TGG | 0.508099 | 7:-77880044 | MsaT038565.1:CDS |
| CCATGTATGATGATAACCTT+GGG | 0.511627 | 7:-77876928 | MsaT038565.1:CDS |
| AGTTCAGTCGCATTCAACTC+CGG | 0.513469 | 7:+77879771 | None:intergenic |
| CTGCTTTGTCTAAATTCCAC+TGG | 0.513826 | 7:+77876492 | None:intergenic |
| TAAGATTGTAATTTGTCCCA+AGG | 0.519599 | 7:+77876912 | None:intergenic |
| TCTCTTTATTAACACTAGAT+GGG | 0.523442 | 7:+77879448 | None:intergenic |
| GAAAAGCGCTAGACTCAAGC+TGG | 0.525180 | 7:-77876534 | MsaT038565.1:CDS |
| CCCACAGTGAATATCCCTCT+CGG | 0.526822 | 7:-77876758 | MsaT038565.1:CDS |
| TGTCCAAAAGCACCCTTCAA+TGG | 0.528458 | 7:+77876227 | None:intergenic |
| GATGTCAGAAATGCAAAGTT+GGG | 0.528739 | 7:-77879394 | MsaT038565.1:CDS |
| GTCTGGCACTAATAAAATGA+AGG | 0.533480 | 7:-77879712 | MsaT038565.1:CDS |
| AGGCATGCTGTTTGCTACAT+CGG | 0.534517 | 7:+77879545 | None:intergenic |
| GTTGCAGGCGGAGTTGGTGT+TGG | 0.535127 | 7:-77879889 | MsaT038565.1:CDS |
| GAAGGGGAACCTGTCGGAAA+GGG | 0.537473 | 7:-77876623 | MsaT038565.1:CDS |
| AAGAATTGATTCTGGAACAC+AGG | 0.538056 | 7:+77876790 | None:intergenic |
| TGAGTTGTGGGATTTGGTTG+GGG | 0.538551 | 7:-77880072 | MsaT038565.1:CDS |
| AACACCTGATTCCGAAGCTA+AGG | 0.538928 | 7:-77876828 | MsaT038565.1:CDS |
| TTGCTTCCATCTGACAATCC+AGG | 0.540122 | 7:+77879525 | None:intergenic |
| TGAGACTAGTCTCAGAAAGT+TGG | 0.541534 | 7:-77879607 | MsaT038565.1:CDS |
| GAATGCGACTGAACTCGAAA+AGG | 0.545834 | 7:-77879763 | MsaT038565.1:CDS |
| ACTCGACAGAACCCTGTACC+TGG | 0.548252 | 7:+77876579 | None:intergenic |
| ATCAAGCTGAAGTGCCCGAA+TGG | 0.549788 | 7:-77876727 | MsaT038565.1:CDS |
| TGTTTGTAAGAATGAGTTGT+GGG | 0.550138 | 7:-77880084 | MsaT038565.1:CDS |
| CCACAGTGAATATCCCTCTC+GGG | 0.550265 | 7:-77876757 | MsaT038565.1:CDS |
| CAACGGATCAAACGTGACAA+TGG | 0.554887 | 7:-77876887 | MsaT038565.1:CDS |
| GGAAGGGGAACCTGTCGGAA+AGG | 0.556040 | 7:-77876624 | MsaT038565.1:CDS |
| ATTGATGGGAGGAAGATGTC+TGG | 0.558695 | 7:-77879729 | MsaT038565.1:CDS |
| CGTTGGCTGTGGCTTCTTAG+GGG | 0.558699 | 7:+77876169 | None:intergenic |
| CTTGATGGTTTGGCCCGAGA+GGG | 0.566622 | 7:+77876744 | None:intergenic |
| CTCACAAGAGTGATTCTAAG+TGG | 0.569925 | 7:-77876694 | MsaT038565.1:CDS |
| AATGATGACGCCAATGAAAG+TGG | 0.572125 | 7:-77879492 | MsaT038565.1:CDS |
| TCCATGTATGATGATAACCT+TGG | 0.573234 | 7:-77876929 | MsaT038565.1:CDS |
| TAATCATGAGATCTGGAAGA+AGG | 0.575062 | 7:-77879295 | MsaT038565.1:CDS |
| AGGTATATGAGTACATTGAT+GGG | 0.575431 | 7:-77879743 | MsaT038565.1:CDS |
| TCATGCCGTTGCCAGGTACA+GGG | 0.583742 | 7:-77876590 | MsaT038565.1:CDS |
| TTCCCGAAGCGTGATTTAGT+GGG | 0.584624 | 7:-77879945 | MsaT038565.1:CDS |
| GTTTATAGTAAGTATTTGAG+TGG | 0.584757 | 7:-77880005 | MsaT038565.1:CDS |
| AGTGGAATTTAGACAAAGCA+GGG | 0.585551 | 7:-77876490 | MsaT038565.1:CDS |
| CCATCAACGACATTCTTCAA+AGG | 0.585696 | 7:+77879972 | None:intergenic |
| AAGAGTGATTCTAAGTGGCT+GGG | 0.587117 | 7:-77876689 | MsaT038565.1:CDS |
| GGTTAACCAAAATTCTGCAA+TGG | 0.593371 | 7:-77879586 | MsaT038565.1:CDS |
| TGGCGATGATGTCTTGATGT+TGG | 0.595435 | 7:-77879472 | MsaT038565.1:CDS |
| GGTTGGGGAAGAATATGGGT+TGG | 0.595753 | 7:-77880057 | MsaT038565.1:CDS |
| GTGTTGGATGATTATGGTGA+GGG | 0.596430 | 7:-77879873 | MsaT038565.1:CDS |
| AGCATGCCTGGATTGTCAGA+TGG | 0.597266 | 7:-77879531 | MsaT038565.1:CDS |
| CAAATTACAATCTTAGACAA+CGG | 0.597787 | 7:-77876904 | MsaT038565.1:CDS |
| AACATCTATCAAGCGAAGCA+GGG | 0.599897 | 7:+77876402 | None:intergenic |
| TAAGCTGTTCATGGTGGTGA+AGG | 0.604654 | 7:-77880126 | MsaT038565.1:CDS |
| GCGTTTAACGGAGTTGCAGG+CGG | 0.610457 | 7:-77879901 | MsaT038565.1:CDS |
| TCGGAATTTACACCATTGAA+GGG | 0.611362 | 7:-77876239 | MsaT038565.1:CDS |
| GCCAAGAAAGTTGAGAGTGA+AGG | 0.613248 | 7:-77879666 | MsaT038565.1:CDS |
| TTCATGGTGGTGAAGGACAA+AGG | 0.614075 | 7:-77880119 | MsaT038565.1:CDS |
| ACAAAGCAGGGGAAGAAGTG+AGG | 0.617748 | 7:-77876478 | MsaT038565.1:CDS |
| AGGTTATCATCATACATGGA+AGG | 0.619750 | 7:+77876932 | None:intergenic |
| GCTTGATGGTTTGGCCCGAG+AGG | 0.620538 | 7:+77876743 | None:intergenic |
| TCAGGCATTGAACCTAACAC+AGG | 0.622398 | 7:+77879342 | None:intergenic |
| AAAGGAAGACAGCTAGTGCA+TGG | 0.624413 | 7:-77876137 | MsaT038565.1:CDS |
| AACATTTCCTAAGAAGAGCA+GGG | 0.628463 | 7:-77876360 | MsaT038565.1:CDS |
| TTGTTTGTAAGAATGAGTTG+TGG | 0.633971 | 7:-77880085 | MsaT038565.1:CDS |
| CAGAACCCTGTACCTGGCAA+CGG | 0.636700 | 7:+77876585 | None:intergenic |
| GAACCTAACACAGGATCACA+AGG | 0.636857 | 7:+77879351 | None:intergenic |
| CCGAGAGGGATATTCACTGT+GGG | 0.648373 | 7:+77876758 | None:intergenic |
| AGAGGGATATTCACTGTGGG+AGG | 0.651849 | 7:+77876761 | None:intergenic |
| TTATGGTGAGGGAGATGTCG+GGG | 0.658460 | 7:-77879862 | MsaT038565.1:CDS |
| TATATGAGTACATTGATGGG+AGG | 0.668237 | 7:-77879740 | MsaT038565.1:CDS |
| ACTCAAGCTGGAAATAGGTG+TGG | 0.680587 | 7:-77876522 | MsaT038565.1:CDS |
| GTGTGATACTAATAGAGTGA+AGG | 0.682936 | 7:-77879802 | MsaT038565.1:CDS |
| GGTGTTGGATGATTATGGTG+AGG | 0.685208 | 7:-77879874 | MsaT038565.1:CDS |
| CCCGAGAGGGATATTCACTG+TGG | 0.699432 | 7:+77876757 | None:intergenic |
| ACGGATCAAACGTGACAATG+GGG | 0.705546 | 7:-77876885 | MsaT038565.1:CDS |
| GGGCGATAGAGTTAAGTTTG+GGG | 0.715012 | 7:-77879925 | MsaT038565.1:CDS |
| GTGGAATTTAGACAAAGCAG+GGG | 0.723671 | 7:-77876489 | MsaT038565.1:CDS |
| TTTGTATAAGCTGTTCATGG+TGG | 0.747724 | 7:-77880132 | MsaT038565.1:CDS |
| ATGGTGGTGAAGGACAAAGG+CGG | 0.797963 | 7:-77880116 | MsaT038565.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 77876124 | 77880180 | 77876124 | ID=MsaG038565 |
| Chr7 | mRNA | 77876124 | 77880180 | 77876124 | ID=MsaT038565.1;Parent=MsaG038565 |
| Chr7 | exon | 77876124 | 77876969 | 77876124 | ID=MsaT038565.1.exon2;Parent=MsaT038565.1 |
| Chr7 | CDS | 77876124 | 77876969 | 77876124 | ID=cds.MsaT038565.1;Parent=MsaT038565.1 |
| Chr7 | exon | 77879224 | 77880180 | 77879224 | ID=MsaT038565.1.exon1;Parent=MsaT038565.1 |
| Chr7 | CDS | 77879224 | 77880180 | 77879224 | ID=cds.MsaT038565.1;Parent=MsaT038565.1 |
| Gene Sequence |
| Protein sequence |