Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG038565 | XP_013449346.1 | 97.167 | 600 | 17 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1206 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG038565 | sp|Q84JT7|ARID1_ARATH | 42.042 | 333 | 151 | 8 | 234 | 555 | 229 | 530 | 3.71e-66 | 229 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG038565 | tr|Q2HUC6|Q2HUC6_MEDTR | 97.167 | 600 | 17 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1206 |
Gene ID | Type | Classification |
---|---|---|
MsaG038565 | TR | ARID |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG038565 | MtrunA17_Chr7g0248041 | 97.167 | 600 | 17 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1206 |
MsaG038565 | MtrunA17_Chr8g0387141 | 34.891 | 599 | 288 | 16 | 1 | 578 | 67 | 584 | 9.51e-91 | 292 |
MsaG038565 | MtrunA17_Chr8g0348691 | 50.190 | 263 | 111 | 6 | 323 | 568 | 1 | 260 | 3.32e-77 | 245 |
MsaG038565 | MtrunA17_Chr8g0387181 | 35.572 | 402 | 199 | 9 | 231 | 578 | 221 | 616 | 3.51e-68 | 233 |
MsaG038565 | MtrunA17_Chr8g0387181 | 57.377 | 61 | 26 | 0 | 1 | 61 | 60 | 120 | 2.69e-12 | 69.7 |
MsaG038565 | MtrunA17_Chr8g0387161 | 36.615 | 325 | 161 | 5 | 259 | 578 | 1 | 285 | 5.82e-65 | 214 |
MsaG038565 | MtrunA17_Chr1g0186281 | 47.917 | 192 | 100 | 0 | 386 | 577 | 381 | 572 | 2.73e-57 | 202 |
MsaG038565 | MtrunA17_Chr1g0186281 | 52.308 | 65 | 31 | 0 | 1 | 65 | 69 | 133 | 3.15e-12 | 69.3 |
MsaG038565 | MtrunA17_Chr1g0186261 | 46.354 | 192 | 103 | 0 | 386 | 577 | 384 | 575 | 2.21e-55 | 197 |
MsaG038565 | MtrunA17_Chr1g0186261 | 52.308 | 65 | 31 | 0 | 1 | 65 | 69 | 133 | 3.97e-11 | 65.9 |
MsaG038565 | MtrunA17_Chr1g0186191 | 33.053 | 357 | 197 | 5 | 255 | 577 | 234 | 582 | 1.70e-54 | 195 |
MsaG038565 | MtrunA17_Chr1g0186191 | 53.846 | 65 | 30 | 0 | 1 | 65 | 83 | 147 | 2.07e-12 | 70.1 |
MsaG038565 | MtrunA17_Chr8g0348681 | 37.195 | 328 | 174 | 9 | 8 | 318 | 16 | 328 | 5.98e-48 | 171 |
MsaG038565 | MtrunA17_Chr6g0479271 | 32.588 | 313 | 180 | 9 | 183 | 483 | 2 | 295 | 5.91e-31 | 123 |
MsaG038565 | MtrunA17_Chr3g0086341 | 37.037 | 189 | 106 | 4 | 378 | 555 | 140 | 326 | 1.86e-30 | 125 |
MsaG038565 | MtrunA17_Chr7g0241681 | 37.870 | 169 | 92 | 3 | 383 | 540 | 190 | 356 | 2.73e-30 | 122 |
MsaG038565 | MtrunA17_Chr7g0241661 | 32.159 | 227 | 135 | 8 | 324 | 534 | 114 | 337 | 1.50e-20 | 93.6 |
MsaG038565 | MtrunA17_Chr5g0420461 | 37.234 | 94 | 40 | 1 | 390 | 483 | 90 | 164 | 1.90e-13 | 69.3 |
MsaG038565 | MtrunA17_Chr6g0453251 | 50.000 | 58 | 29 | 0 | 1 | 58 | 67 | 124 | 7.73e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG038565 | AT2G46040.3 | 42.042 | 333 | 151 | 8 | 234 | 555 | 229 | 530 | 3.77e-67 | 229 |
MsaG038565 | AT2G46040.1 | 42.042 | 333 | 151 | 8 | 234 | 555 | 229 | 530 | 3.77e-67 | 229 |
MsaG038565 | AT2G46040.2 | 42.042 | 333 | 151 | 8 | 234 | 555 | 243 | 544 | 4.41e-67 | 229 |
MsaG038565 | AT4G11400.2 | 39.823 | 339 | 175 | 7 | 251 | 566 | 218 | 550 | 3.19e-63 | 218 |
MsaG038565 | AT4G11400.1 | 39.823 | 339 | 175 | 7 | 251 | 566 | 218 | 550 | 3.19e-63 | 218 |
MsaG038565 | AT5G04110.1 | 40.805 | 174 | 91 | 4 | 387 | 549 | 361 | 533 | 9.61e-34 | 135 |
MsaG038565 | AT5G04110.3 | 40.805 | 174 | 91 | 4 | 387 | 549 | 361 | 533 | 9.61e-34 | 135 |
MsaG038565 | AT5G04110.2 | 40.805 | 174 | 91 | 4 | 387 | 549 | 362 | 534 | 9.89e-34 | 135 |
MsaG038565 | AT2G03470.2 | 31.818 | 286 | 165 | 8 | 286 | 555 | 24 | 295 | 2.07e-31 | 127 |
MsaG038565 | AT2G03470.1 | 31.707 | 287 | 165 | 8 | 286 | 555 | 24 | 296 | 2.63e-31 | 127 |
MsaG038565 | AT1G13880.1 | 35.000 | 200 | 110 | 5 | 383 | 569 | 124 | 316 | 2.33e-26 | 112 |
MsaG038565 | AT1G13880.3 | 35.000 | 200 | 110 | 5 | 383 | 569 | 125 | 317 | 2.40e-26 | 112 |
MsaG038565 | AT1G13880.2 | 35.000 | 200 | 110 | 5 | 383 | 569 | 134 | 326 | 2.69e-26 | 112 |
MsaG038565 | AT1G26580.3 | 35.204 | 196 | 108 | 4 | 378 | 555 | 60 | 254 | 3.50e-26 | 112 |
MsaG038565 | AT1G26580.2 | 35.204 | 196 | 108 | 4 | 378 | 555 | 126 | 320 | 6.05e-26 | 112 |
MsaG038565 | AT1G26580.1 | 35.204 | 196 | 108 | 4 | 378 | 555 | 126 | 320 | 6.05e-26 | 112 |
MsaG038565 | AT5G04110.4 | 40.690 | 145 | 74 | 4 | 387 | 520 | 361 | 504 | 2.79e-25 | 110 |
Find 150 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCGCTTGATAGATGTTTC+TGG | 0.140839 | 7:-77876397 | MsaT038565.1:CDS |
TTATCTCCATTGCAGAATTT+TGG | 0.184734 | 7:+77879580 | None:intergenic |
GTCTAAATTCCACTGGTAAA+AGG | 0.214752 | 7:+77876499 | None:intergenic |
GGCGTTGGCTGTGGCTTCTT+AGG | 0.242383 | 7:+77876167 | None:intergenic |
CTCTCTTTATTAACACTAGA+TGG | 0.242913 | 7:+77879447 | None:intergenic |
TCCTTCACTCTCAACTTTCT+TGG | 0.243171 | 7:+77879665 | None:intergenic |
AAACTTTCCCTGCTCTTCTT+AGG | 0.251694 | 7:+77876353 | None:intergenic |
AATCGTAAAATCCGAACTTT+TGG | 0.277183 | 7:-77876645 | MsaT038565.1:CDS |
GATTTGGTTGGGGAAGAATA+TGG | 0.301512 | 7:-77880062 | MsaT038565.1:CDS |
AAGAGAGCTTTGGTCGTAAA+AGG | 0.302198 | 7:-77879431 | MsaT038565.1:CDS |
AAATTCTGCAATGGAGATAA+TGG | 0.316341 | 7:-77879577 | MsaT038565.1:CDS |
ATTCGGGCACTTCAGCTTGA+TGG | 0.324498 | 7:+77876729 | None:intergenic |
CACGAATCTTGTGTCTAATA+TGG | 0.325526 | 7:-77879688 | MsaT038565.1:CDS |
ACACCATTGAAGGGTGCTTT+TGG | 0.331159 | 7:-77876230 | MsaT038565.1:CDS |
GGCACTTCAGCTTGATGGTT+TGG | 0.334418 | 7:+77876734 | None:intergenic |
GCTAGACTCAAGCTGGAAAT+AGG | 0.340184 | 7:-77876527 | MsaT038565.1:CDS |
GGAGCGTTTAACGGAGTTGC+AGG | 0.344592 | 7:-77879904 | MsaT038565.1:CDS |
TGGGCGATAGAGTTAAGTTT+GGG | 0.351590 | 7:-77879926 | MsaT038565.1:CDS |
GCGTTGGCTGTGGCTTCTTA+GGG | 0.354312 | 7:+77876168 | None:intergenic |
GTGGGCGATAGAGTTAAGTT+TGG | 0.357837 | 7:-77879927 | MsaT038565.1:CDS |
ATGAGTTGTGGGATTTGGTT+GGG | 0.366912 | 7:-77880073 | MsaT038565.1:CDS |
AATCCTTGTGATCCTGTGTT+AGG | 0.370694 | 7:-77879354 | MsaT038565.1:CDS |
TAAGAATGAGTTGTGGGATT+TGG | 0.371336 | 7:-77880078 | MsaT038565.1:CDS |
GTGAGTTGTGCCAGTCCATT+CGG | 0.372553 | 7:+77876712 | None:intergenic |
TCATCACTGTCAATGTTATC+AGG | 0.372585 | 7:+77876269 | None:intergenic |
TTCGCTTGATAGATGTTTCT+GGG | 0.372715 | 7:-77876396 | MsaT038565.1:CDS |
GACATCATCGCCACTTTCAT+TGG | 0.385220 | 7:+77879482 | None:intergenic |
AGTGGCTGGGAACTCAAATA+TGG | 0.387174 | 7:-77876676 | MsaT038565.1:CDS |
CAATGCCTGAAAAGTCAAAA+TGG | 0.398546 | 7:-77879329 | MsaT038565.1:CDS |
TGGCTTCTTAGGGGATAATA+AGG | 0.401536 | 7:+77876178 | None:intergenic |
GAGTTGGTGTTGGATGATTA+TGG | 0.401674 | 7:-77879879 | MsaT038565.1:CDS |
TTCATGCCGTTGCCAGGTAC+AGG | 0.406356 | 7:-77876591 | MsaT038565.1:CDS |
AGATTTGTATAAGCTGTTCA+TGG | 0.410254 | 7:-77880135 | MsaT038565.1:CDS |
GTTGGGGAAGAATATGGGTT+GGG | 0.412314 | 7:-77880056 | MsaT038565.1:CDS |
TAGAGTGAAGGTTGTGAATC+CGG | 0.413505 | 7:-77879790 | MsaT038565.1:CDS |
TATCAGGAGTATGCCTGTTC+TGG | 0.414090 | 7:+77876285 | None:intergenic |
GATGAAGTCAAGAGTGTATA+CGG | 0.415499 | 7:-77879840 | MsaT038565.1:CDS |
GGGAAGAAGTGAGGCGATGC+TGG | 0.415602 | 7:-77876469 | MsaT038565.1:CDS |
GGTGCATCAAGAATTGATTC+TGG | 0.415723 | 7:+77876782 | None:intergenic |
AGGTTCCCCTTCCAAAAGTT+CGG | 0.417302 | 7:+77876634 | None:intergenic |
ATTTGGTTGGGGAAGAATAT+GGG | 0.421040 | 7:-77880061 | MsaT038565.1:CDS |
AACGGATCAAACGTGACAAT+GGG | 0.422576 | 7:-77876886 | MsaT038565.1:CDS |
GATTATGGTGAGGGAGATGT+CGG | 0.423212 | 7:-77879864 | MsaT038565.1:CDS |
CCTTTGAAGAATGTCGTTGA+TGG | 0.425457 | 7:-77879972 | MsaT038565.1:CDS |
TGAGTTGTGCCAGTCCATTC+GGG | 0.426236 | 7:+77876713 | None:intergenic |
CAAGAGTGATTCTAAGTGGC+TGG | 0.427819 | 7:-77876690 | MsaT038565.1:CDS |
CGATGTCAGAAATGCAAAGT+TGG | 0.431021 | 7:-77879395 | MsaT038565.1:CDS |
GGGTGTGAAAGTTGGTTCTT+CGG | 0.433272 | 7:-77880036 | MsaT038565.1:CDS |
AAAGAGATCTAGAAAATGTT+GGG | 0.435560 | 7:-77880173 | None:intergenic |
AAGGTATATGAGTACATTGA+TGG | 0.435788 | 7:-77879744 | MsaT038565.1:CDS |
TAAGTTTGGGGAGCGTTTAA+CGG | 0.437682 | 7:-77879913 | MsaT038565.1:CDS |
ACAATGAAGCTCATGATTTG+AGG | 0.438613 | 7:+77876114 | None:intergenic |
AACGGAGTTGCAGGCGGAGT+TGG | 0.440717 | 7:-77879895 | MsaT038565.1:CDS |
AAACATCTATCAAGCGAAGC+AGG | 0.442525 | 7:+77876401 | None:intergenic |
ATTATGGTGAGGGAGATGTC+GGG | 0.443986 | 7:-77879863 | MsaT038565.1:CDS |
ATCGGAATTTACACCATTGA+AGG | 0.444707 | 7:-77876240 | MsaT038565.1:CDS |
GTTCCCGAAGCGTGATTTAG+TGG | 0.446072 | 7:-77879946 | MsaT038565.1:CDS |
CAACATTTCCTAAGAAGAGC+AGG | 0.455515 | 7:-77876361 | MsaT038565.1:CDS |
AGTGTTAATAAAGAGAGCTT+TGG | 0.458202 | 7:-77879441 | MsaT038565.1:CDS |
CGCCCACTAAATCACGCTTC+GGG | 0.472395 | 7:+77879943 | None:intergenic |
GATGTAGCAAACAGCATGCC+TGG | 0.473778 | 7:-77879543 | MsaT038565.1:CDS |
TTTGTATGTGGCGTTGGCTG+TGG | 0.473835 | 7:+77876158 | None:intergenic |
TCGCCCACTAAATCACGCTT+CGG | 0.475900 | 7:+77879942 | None:intergenic |
CCCAAGGTTATCATCATACA+TGG | 0.476856 | 7:+77876928 | None:intergenic |
ACAAGATTCATGCCGTTGCC+AGG | 0.482217 | 7:-77876597 | MsaT038565.1:CDS |
TGACAGTGATGATGAAGAAT+CGG | 0.482629 | 7:-77876258 | MsaT038565.1:CDS |
CTTACGGTAATCATGAGATC+TGG | 0.482890 | 7:-77879302 | MsaT038565.1:CDS |
TCTTGTCTTCCCTTTCCGAC+AGG | 0.485818 | 7:+77876614 | None:intergenic |
CAGCCAACGCCACATACAAA+AGG | 0.491192 | 7:-77876155 | MsaT038565.1:CDS |
AATGAGTTGTGGGATTTGGT+TGG | 0.494085 | 7:-77880074 | MsaT038565.1:CDS |
ACTAGTTGACGTGCTTATGC+AGG | 0.495122 | 7:-77879643 | MsaT038565.1:CDS |
CAGTGGAATTTAGACAAAGC+AGG | 0.497895 | 7:-77876491 | MsaT038565.1:CDS |
GCTGAAGTGCCCGAATGGAC+TGG | 0.499421 | 7:-77876722 | MsaT038565.1:CDS |
AAGTCAAAATGGAAGTCTTA+CGG | 0.503873 | 7:-77879318 | MsaT038565.1:CDS |
TCAAGAGTGTATACGGATGT+AGG | 0.504450 | 7:-77879833 | MsaT038565.1:CDS |
AGCGCAGAGGATACCAGAAC+AGG | 0.504565 | 7:-77876298 | MsaT038565.1:CDS |
TATGGGTTGGGTGTGAAAGT+TGG | 0.508099 | 7:-77880044 | MsaT038565.1:CDS |
CCATGTATGATGATAACCTT+GGG | 0.511627 | 7:-77876928 | MsaT038565.1:CDS |
AGTTCAGTCGCATTCAACTC+CGG | 0.513469 | 7:+77879771 | None:intergenic |
CTGCTTTGTCTAAATTCCAC+TGG | 0.513826 | 7:+77876492 | None:intergenic |
TAAGATTGTAATTTGTCCCA+AGG | 0.519599 | 7:+77876912 | None:intergenic |
TCTCTTTATTAACACTAGAT+GGG | 0.523442 | 7:+77879448 | None:intergenic |
GAAAAGCGCTAGACTCAAGC+TGG | 0.525180 | 7:-77876534 | MsaT038565.1:CDS |
CCCACAGTGAATATCCCTCT+CGG | 0.526822 | 7:-77876758 | MsaT038565.1:CDS |
TGTCCAAAAGCACCCTTCAA+TGG | 0.528458 | 7:+77876227 | None:intergenic |
GATGTCAGAAATGCAAAGTT+GGG | 0.528739 | 7:-77879394 | MsaT038565.1:CDS |
GTCTGGCACTAATAAAATGA+AGG | 0.533480 | 7:-77879712 | MsaT038565.1:CDS |
AGGCATGCTGTTTGCTACAT+CGG | 0.534517 | 7:+77879545 | None:intergenic |
GTTGCAGGCGGAGTTGGTGT+TGG | 0.535127 | 7:-77879889 | MsaT038565.1:CDS |
GAAGGGGAACCTGTCGGAAA+GGG | 0.537473 | 7:-77876623 | MsaT038565.1:CDS |
AAGAATTGATTCTGGAACAC+AGG | 0.538056 | 7:+77876790 | None:intergenic |
TGAGTTGTGGGATTTGGTTG+GGG | 0.538551 | 7:-77880072 | MsaT038565.1:CDS |
AACACCTGATTCCGAAGCTA+AGG | 0.538928 | 7:-77876828 | MsaT038565.1:CDS |
TTGCTTCCATCTGACAATCC+AGG | 0.540122 | 7:+77879525 | None:intergenic |
TGAGACTAGTCTCAGAAAGT+TGG | 0.541534 | 7:-77879607 | MsaT038565.1:CDS |
GAATGCGACTGAACTCGAAA+AGG | 0.545834 | 7:-77879763 | MsaT038565.1:CDS |
ACTCGACAGAACCCTGTACC+TGG | 0.548252 | 7:+77876579 | None:intergenic |
ATCAAGCTGAAGTGCCCGAA+TGG | 0.549788 | 7:-77876727 | MsaT038565.1:CDS |
TGTTTGTAAGAATGAGTTGT+GGG | 0.550138 | 7:-77880084 | MsaT038565.1:CDS |
CCACAGTGAATATCCCTCTC+GGG | 0.550265 | 7:-77876757 | MsaT038565.1:CDS |
CAACGGATCAAACGTGACAA+TGG | 0.554887 | 7:-77876887 | MsaT038565.1:CDS |
GGAAGGGGAACCTGTCGGAA+AGG | 0.556040 | 7:-77876624 | MsaT038565.1:CDS |
ATTGATGGGAGGAAGATGTC+TGG | 0.558695 | 7:-77879729 | MsaT038565.1:CDS |
CGTTGGCTGTGGCTTCTTAG+GGG | 0.558699 | 7:+77876169 | None:intergenic |
CTTGATGGTTTGGCCCGAGA+GGG | 0.566622 | 7:+77876744 | None:intergenic |
CTCACAAGAGTGATTCTAAG+TGG | 0.569925 | 7:-77876694 | MsaT038565.1:CDS |
AATGATGACGCCAATGAAAG+TGG | 0.572125 | 7:-77879492 | MsaT038565.1:CDS |
TCCATGTATGATGATAACCT+TGG | 0.573234 | 7:-77876929 | MsaT038565.1:CDS |
TAATCATGAGATCTGGAAGA+AGG | 0.575062 | 7:-77879295 | MsaT038565.1:CDS |
AGGTATATGAGTACATTGAT+GGG | 0.575431 | 7:-77879743 | MsaT038565.1:CDS |
TCATGCCGTTGCCAGGTACA+GGG | 0.583742 | 7:-77876590 | MsaT038565.1:CDS |
TTCCCGAAGCGTGATTTAGT+GGG | 0.584624 | 7:-77879945 | MsaT038565.1:CDS |
GTTTATAGTAAGTATTTGAG+TGG | 0.584757 | 7:-77880005 | MsaT038565.1:CDS |
AGTGGAATTTAGACAAAGCA+GGG | 0.585551 | 7:-77876490 | MsaT038565.1:CDS |
CCATCAACGACATTCTTCAA+AGG | 0.585696 | 7:+77879972 | None:intergenic |
AAGAGTGATTCTAAGTGGCT+GGG | 0.587117 | 7:-77876689 | MsaT038565.1:CDS |
GGTTAACCAAAATTCTGCAA+TGG | 0.593371 | 7:-77879586 | MsaT038565.1:CDS |
TGGCGATGATGTCTTGATGT+TGG | 0.595435 | 7:-77879472 | MsaT038565.1:CDS |
GGTTGGGGAAGAATATGGGT+TGG | 0.595753 | 7:-77880057 | MsaT038565.1:CDS |
GTGTTGGATGATTATGGTGA+GGG | 0.596430 | 7:-77879873 | MsaT038565.1:CDS |
AGCATGCCTGGATTGTCAGA+TGG | 0.597266 | 7:-77879531 | MsaT038565.1:CDS |
CAAATTACAATCTTAGACAA+CGG | 0.597787 | 7:-77876904 | MsaT038565.1:CDS |
AACATCTATCAAGCGAAGCA+GGG | 0.599897 | 7:+77876402 | None:intergenic |
TAAGCTGTTCATGGTGGTGA+AGG | 0.604654 | 7:-77880126 | MsaT038565.1:CDS |
GCGTTTAACGGAGTTGCAGG+CGG | 0.610457 | 7:-77879901 | MsaT038565.1:CDS |
TCGGAATTTACACCATTGAA+GGG | 0.611362 | 7:-77876239 | MsaT038565.1:CDS |
GCCAAGAAAGTTGAGAGTGA+AGG | 0.613248 | 7:-77879666 | MsaT038565.1:CDS |
TTCATGGTGGTGAAGGACAA+AGG | 0.614075 | 7:-77880119 | MsaT038565.1:CDS |
ACAAAGCAGGGGAAGAAGTG+AGG | 0.617748 | 7:-77876478 | MsaT038565.1:CDS |
AGGTTATCATCATACATGGA+AGG | 0.619750 | 7:+77876932 | None:intergenic |
GCTTGATGGTTTGGCCCGAG+AGG | 0.620538 | 7:+77876743 | None:intergenic |
TCAGGCATTGAACCTAACAC+AGG | 0.622398 | 7:+77879342 | None:intergenic |
AAAGGAAGACAGCTAGTGCA+TGG | 0.624413 | 7:-77876137 | MsaT038565.1:CDS |
AACATTTCCTAAGAAGAGCA+GGG | 0.628463 | 7:-77876360 | MsaT038565.1:CDS |
TTGTTTGTAAGAATGAGTTG+TGG | 0.633971 | 7:-77880085 | MsaT038565.1:CDS |
CAGAACCCTGTACCTGGCAA+CGG | 0.636700 | 7:+77876585 | None:intergenic |
GAACCTAACACAGGATCACA+AGG | 0.636857 | 7:+77879351 | None:intergenic |
CCGAGAGGGATATTCACTGT+GGG | 0.648373 | 7:+77876758 | None:intergenic |
AGAGGGATATTCACTGTGGG+AGG | 0.651849 | 7:+77876761 | None:intergenic |
TTATGGTGAGGGAGATGTCG+GGG | 0.658460 | 7:-77879862 | MsaT038565.1:CDS |
TATATGAGTACATTGATGGG+AGG | 0.668237 | 7:-77879740 | MsaT038565.1:CDS |
ACTCAAGCTGGAAATAGGTG+TGG | 0.680587 | 7:-77876522 | MsaT038565.1:CDS |
GTGTGATACTAATAGAGTGA+AGG | 0.682936 | 7:-77879802 | MsaT038565.1:CDS |
GGTGTTGGATGATTATGGTG+AGG | 0.685208 | 7:-77879874 | MsaT038565.1:CDS |
CCCGAGAGGGATATTCACTG+TGG | 0.699432 | 7:+77876757 | None:intergenic |
ACGGATCAAACGTGACAATG+GGG | 0.705546 | 7:-77876885 | MsaT038565.1:CDS |
GGGCGATAGAGTTAAGTTTG+GGG | 0.715012 | 7:-77879925 | MsaT038565.1:CDS |
GTGGAATTTAGACAAAGCAG+GGG | 0.723671 | 7:-77876489 | MsaT038565.1:CDS |
TTTGTATAAGCTGTTCATGG+TGG | 0.747724 | 7:-77880132 | MsaT038565.1:CDS |
ATGGTGGTGAAGGACAAAGG+CGG | 0.797963 | 7:-77880116 | MsaT038565.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 77876124 | 77880180 | 77876124 | ID=MsaG038565 |
Chr7 | mRNA | 77876124 | 77880180 | 77876124 | ID=MsaT038565.1;Parent=MsaG038565 |
Chr7 | exon | 77876124 | 77876969 | 77876124 | ID=MsaT038565.1.exon2;Parent=MsaT038565.1 |
Chr7 | CDS | 77876124 | 77876969 | 77876124 | ID=cds.MsaT038565.1;Parent=MsaT038565.1 |
Chr7 | exon | 77879224 | 77880180 | 77879224 | ID=MsaT038565.1.exon1;Parent=MsaT038565.1 |
Chr7 | CDS | 77879224 | 77880180 | 77879224 | ID=cds.MsaT038565.1;Parent=MsaT038565.1 |
Gene Sequence |
Protein sequence |