AlfalfaGEDB | MsaG038601

M. sativa ssp. caerulea / MsaG038601

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038601	XP_003624053.1	98.408	377	6	0	41	417	115	491	0.0	763

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038601	sp\|Q3EDL4\|Y1154_ARATH	83.082	331	52	2	41	371	112	438	0.0	583

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038601	tr\|G7L6L4\|G7L6L4_MEDTR	98.408	377	6	0	41	417	115	491	0.0	763

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000113	MsaG038601	0.803494	5.715114e-49	8.367128e-47
MsaG000321	MsaG038601	0.810181	2.239655e-50	3.841501e-48
MsaG000791	MsaG038601	0.811834	9.854855e-51	1.760160e-48
MsaG000884	MsaG038601	0.817665	5.104111e-52	1.056139e-49
MsaG001196	MsaG038601	0.811440	1.199712e-50	2.122087e-48
MsaG001434	MsaG038601	0.810947	1.532883e-50	2.678847e-48
MsaG001441	MsaG038601	0.801040	1.818840e-48	2.517534e-46
MsaG001514	MsaG038601	0.800049	2.890012e-48	3.911757e-46
MsaG001911	MsaG038601	0.808540	5.018084e-50	8.273047e-48
MsaG002201	MsaG038601	0.805093	2.663830e-49	4.047313e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038601	MtrunA17_Chr7g0248491	98.408	377	6	0	41	417	115	491	0.0	763
MsaG038601	MtrunA17_Chr8g0348451	80.323	371	67	2	45	414	107	472	0.0	612
MsaG038601	MtrunA17_Chr5g0402071	79.167	312	65	0	59	370	139	450	0.0	538
MsaG038601	MtrunA17_Chr3g0144551	73.770	305	80	0	67	371	114	418	2.97e-170	484
MsaG038601	MtrunA17_Chr4g0034931	71.661	307	87	0	65	371	118	424	9.67e-168	478
MsaG038601	MtrunA17_Chr5g0443121	67.761	335	104	2	49	379	141	475	4.33e-166	476
MsaG038601	MtrunA17_Chr3g0096351	64.706	340	119	1	65	404	159	497	3.39e-158	456
MsaG038601	MtrunA17_Chr7g0271451	71.237	299	86	0	64	362	172	470	4.12e-157	453
MsaG038601	MtrunA17_Chr4g0069251	60.112	356	129	3	64	417	156	500	1.31e-156	451
MsaG038601	MtrunA17_Chr2g0302631	63.636	330	120	0	64	393	161	490	4.79e-155	447

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038601	AT4G01330.1	79.387	359	68	3	45	402	123	476	0.0	587
MsaG038601	AT4G01330.2	79.167	360	68	3	45	402	123	477	0.0	584
MsaG038601	AT1G01540.2	83.082	331	52	2	41	371	112	438	0.0	583
MsaG038601	AT4G01330.3	84.520	323	47	1	45	367	123	442	0.0	576
MsaG038601	AT4G02630.1	72.807	342	90	2	63	403	138	477	0.0	514
MsaG038601	AT4G34500.1	68.563	334	99	2	46	377	108	437	3.28e-171	486
MsaG038601	AT2G42960.3	70.684	307	90	0	64	370	160	466	2.29e-161	464
MsaG038601	AT2G42960.5	70.684	307	90	0	64	370	160	466	2.29e-161	464
MsaG038601	AT2G42960.4	70.684	307	90	0	64	370	160	466	2.29e-161	464
MsaG038601	AT2G42960.1	70.684	307	90	0	64	370	160	466	2.29e-161	464

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Find 122 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGAGGTAGAAGCAAT+TGG	0.488915	7:-78477175	MsaT038601.1:CDS
AAATCTGATAAGGTTTCAAG+TGG	0.607449	7:-78478784	MsaT038601.1:CDS
AAATTTGAGTCCTCAAGCTC+TGG	0.464492	7:+78475560	None:intergenic
AACATACATTATGGAATAAG+AGG	0.498686	7:+78475875	None:intergenic
AACTCCAAGGTTTCTGATTT+CGG	0.204899	7:-78476700	MsaT038601.1:CDS
AAGAGTGATGTTTATAGCTT+TGG	0.277407	7:-78476433	MsaT038601.1:CDS
AAGCCCGAAATCAGAAACCT+TGG	0.589361	7:+78476696	None:intergenic
AATACGCATGAACGTTATAT+TGG	0.258801	7:-78476912	MsaT038601.1:CDS
AATAGAGTGGTTGAAGACTA+TGG	0.343155	7:-78476061	MsaT038601.1:CDS
AATCTTGAACAGTGGTTGCA+TGG	0.529672	7:-78476968	MsaT038601.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	78475478	78478895	78475478	ID=MsaG038601
Chr7	mRNA	78475478	78478895	78475478	ID=MsaT038601.1;Parent=MsaG038601
Chr7	exon	78475478	78475630	78475478	ID=MsaT038601.1.exon7;Parent=MsaT038601.1
Chr7	CDS	78475478	78475630	78475478	ID=cds.MsaT038601.1;Parent=MsaT038601.1
Chr7	exon	78475882	78476091	78475882	ID=MsaT038601.1.exon6;Parent=MsaT038601.1
Chr7	CDS	78475882	78476091	78475882	ID=cds.MsaT038601.1;Parent=MsaT038601.1
Chr7	exon	78476369	78476498	78476369	ID=MsaT038601.1.exon5;Parent=MsaT038601.1
Chr7	CDS	78476369	78476498	78476369	ID=cds.MsaT038601.1;Parent=MsaT038601.1
Chr7	exon	78476637	78476807	78476637	ID=MsaT038601.1.exon4;Parent=MsaT038601.1
Chr7	CDS	78476637	78476807	78476637	ID=cds.MsaT038601.1;Parent=MsaT038601.1
Chr7	exon	78476899	78477021	78476899	ID=MsaT038601.1.exon3;Parent=MsaT038601.1
Chr7	CDS	78476899	78477021	78476899	ID=cds.MsaT038601.1;Parent=MsaT038601.1
Chr7	exon	78477115	78477219	78477115	ID=MsaT038601.1.exon2;Parent=MsaT038601.1
Chr7	CDS	78477115	78477219	78477115	ID=cds.MsaT038601.1;Parent=MsaT038601.1
Chr7	exon	78478534	78478895	78478534	ID=MsaT038601.1.exon1;Parent=MsaT038601.1
Chr7	CDS	78478534	78478895	78478534	ID=cds.MsaT038601.1;Parent=MsaT038601.1

Gene Sequence

>MsaT038601.1

ATGTTCCAGGACCACACATGCTCCGGCGACCAACTTCGGTACCGGAGATCCACGTGGACATTGGAAGACAAGAACATCGTGTGGTTGTTAAATCTGATAAGGTTTCAAGTGGTGAGAGTAAAGGGAACAGTGGGAAGCGGGTGTGAAACGACGTCGTCTTTTGGAAGTGGTAGTGTTGGTGGGATTGGTCCTGAAGTGTCACATCTTGGGTGGGGTAGATGGTATACTTTGAGAGAGCTTGAAGATGCTACTGGTGGATTGTGTCCTGAAAATGTTCTTGGTGAAGGTGGTTATGGAATTGTTTATCATGGTGTTCTTACTGATGGTACTAAAGTTGCTGTCAAAAACCTCTTGAATAACAAGGGCCAAGCTGAGAAAGAATTCAAAGTAGAGGTAGAAGCAATTGGTCGAGTACGACACAAAAATCTTGTTAGGCTGCTTGGATATTGTGTTGAAGGGGCCTACAGGATGCTTGTGTATGAATATGTGGACAATGGCAATCTTGAACAGTGGTTGCATGGGGATGTTGGACCTGTAAGCCCTTTGACATGGGAAATACGCATGAACGTTATATTGGGAACAGCCAGAGGATTGGCCTATCTACATGAGGGTCTTGAACCAAAGGTTGTTCATCGAGATGTGAAGTCAAGTAACATCCTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTCGGGCTTGCCAAGCTTTTGAATTCCGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAATATGCATGCACTGGAATGCTGACCGAGAAGAGTGATGTTTATAGCTTTGGGATACTAATCATGGAGCTAATTACTGGGAGAAGTCCCGTTGATTATGGTAGACCTCAAGGAGAGGTCAATTTAATAGAGTGGTTGAAGACTATGGTTGGTAATAGAAAAGCTGAGGAAGTAGTTGATCCTAAGCTACCTGAGTTGCCATCTTCAAAAGCTCTTAAACGCGCTCTGTTAATCGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCTAAAATGGGACATGTGATTCACATGCTTGAGGCAGACGACCTCTTATTCCATAATGATCGCAAAACTGGGGGAGAGTCTTCGCGATCTCTTAATGAGTTTCAACCAGAGCTTGAGGACTCAAATTTGGATAAGAGAACAGATGAAGGAATCAGTGGTCAAAGTGAACATGGTAGTGGTAGAAATAATAATCATCAGTCTAGGAGATGA

Protein sequence

>MsaT038601.1

MFQDHTCSGDQLRYRRSTWTLEDKNIVWLLNLIRFQVVRVKGTVGSGCETTSSFGSGSVGGIGPEVSHLGWGRWYTLRELEDATGGLCPENVLGEGGYGIVYHGVLTDGTKVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWEIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLNSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMELITGRSPVDYGRPQGEVNLIEWLKTMVGNRKAEEVVDPKLPELPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNDRKTGGESSRSLNEFQPELEDSNLDKRTDEGISGQSEHGSGRNNNHQSRR*