AlfalfaGEDB | MsaG038604

M. sativa ssp. caerulea / MsaG038604

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038604	XP_003624053.1	79.513	493	35	3	1	429	1	491	0.0	754

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038604	sp\|Q3EDL4\|Y1154_ARATH	60.938	448	100	9	1	383	1	438	2.10e-180	514

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038604	tr\|G7L6L4\|G7L6L4_MEDTR	79.513	493	35	3	1	429	1	491	0.0	754

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG037152	MsaG038604	0.903896	5.056474e-79	3.259393e-75

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038604	MtrunA17_Chr7g0248491	79.513	493	35	3	1	429	1	491	0.0	754
MsaG038604	MtrunA17_Chr8g0348451	59.420	483	128	7	1	426	1	472	1.03e-178	507
MsaG038604	MtrunA17_Chr5g0402071	52.088	455	140	9	1	382	1	450	1.31e-138	406
MsaG038604	MtrunA17_Chr3g0144551	49.282	418	145	9	17	383	17	418	7.20e-124	367
MsaG038604	MtrunA17_Chr4g0034931	61.372	277	67	1	147	383	148	424	1.07e-120	358
MsaG038604	MtrunA17_Chr3g0096351	44.016	493	189	9	9	416	7	497	2.70e-119	357
MsaG038604	MtrunA17_Chr4g0069251	40.864	509	200	10	9	429	5	500	2.80e-117	352
MsaG038604	MtrunA17_Chr5g0443121	43.659	481	161	11	9	391	7	475	2.33e-115	347
MsaG038604	MtrunA17_Chr7g0271451	58.696	276	72	2	139	374	197	470	1.34e-106	325
MsaG038604	MtrunA17_Chr2g0302631	53.746	307	100	2	139	405	186	490	3.44e-106	323

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038604	AT1G01540.2	60.938	448	100	9	1	383	1	438	0.0	514
MsaG038604	AT4G01330.1	58.873	479	127	9	1	414	3	476	0.0	514
MsaG038604	AT4G01330.2	58.750	480	127	9	1	414	3	477	3.10e-180	511
MsaG038604	AT4G01330.3	60.948	443	106	7	1	379	3	442	8.51e-177	502
MsaG038604	AT4G02630.1	49.587	484	166	10	3	415	1	477	4.09e-137	402
MsaG038604	AT1G01540.1	58.667	375	80	10	1	310	1	365	4.28e-133	388
MsaG038604	AT4G34500.1	47.786	429	159	8	18	389	17	437	4.42e-121	359
MsaG038604	AT2G42960.3	59.206	277	73	1	147	383	191	467	6.02e-110	333
MsaG038604	AT2G42960.5	59.206	277	73	1	147	383	191	467	6.02e-110	333
MsaG038604	AT2G42960.4	59.206	277	73	1	147	383	191	467	6.02e-110	333

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Find 117 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGAGGTAGAAGCAAT+TGG	0.488915	7:-78525326	MsaT038604.1:CDS
AAATCTGATAAGGTTTCAAG+TGG	0.607449	7:-78526942	MsaT038604.1:CDS
AAATTTGAGTCCTCAAGCTC+TGG	0.464492	7:+78523712	None:intergenic
AACATACATTATGGAATAAG+AGG	0.498686	7:+78524027	None:intergenic
AAGAGTGATGTTTATAGCTT+TGG	0.277407	7:-78524585	MsaT038604.1:CDS
AATACGCATGAACGTTATAT+TGG	0.258801	7:-78525063	MsaT038604.1:CDS
AATAGAGTGGTTGAAGACTA+TGG	0.343155	7:-78524213	MsaT038604.1:CDS
AATCTTGAACAGTGGTTGCA+TGG	0.529672	7:-78525119	MsaT038604.1:CDS
ACAATGGCAATCTTGAACAG+TGG	0.635647	7:-78525127	MsaT038604.1:CDS
ACACATACTTGTTATTCAAG+AGG	0.535417	7:+78526686	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	78523630	78527276	78523630	ID=MsaG038604
Chr7	mRNA	78523630	78527276	78523630	ID=MsaT038604.1;Parent=MsaG038604
Chr7	exon	78523630	78523782	78523630	ID=MsaT038604.1.exon8;Parent=MsaT038604.1
Chr7	CDS	78523630	78523782	78523630	ID=cds.MsaT038604.1;Parent=MsaT038604.1
Chr7	exon	78524034	78524243	78524034	ID=MsaT038604.1.exon7;Parent=MsaT038604.1
Chr7	CDS	78524034	78524243	78524034	ID=cds.MsaT038604.1;Parent=MsaT038604.1
Chr7	exon	78524521	78524607	78524521	ID=MsaT038604.1.exon6;Parent=MsaT038604.1
Chr7	CDS	78524521	78524607	78524521	ID=cds.MsaT038604.1;Parent=MsaT038604.1
Chr7	exon	78524865	78524958	78524865	ID=MsaT038604.1.exon5;Parent=MsaT038604.1
Chr7	CDS	78524865	78524958	78524865	ID=cds.MsaT038604.1;Parent=MsaT038604.1
Chr7	exon	78525050	78525172	78525050	ID=MsaT038604.1.exon4;Parent=MsaT038604.1
Chr7	CDS	78525050	78525172	78525050	ID=cds.MsaT038604.1;Parent=MsaT038604.1
Chr7	exon	78525266	78525370	78525266	ID=MsaT038604.1.exon3;Parent=MsaT038604.1
Chr7	CDS	78525266	78525370	78525266	ID=cds.MsaT038604.1;Parent=MsaT038604.1
Chr7	exon	78526694	78526769	78526694	ID=MsaT038604.1.exon2;Parent=MsaT038604.1
Chr7	CDS	78526694	78526769	78526694	ID=cds.MsaT038604.1;Parent=MsaT038604.1
Chr7	exon	78526835	78527276	78526835	ID=MsaT038604.1.exon1;Parent=MsaT038604.1
Chr7	CDS	78526835	78527276	78526835	ID=cds.MsaT038604.1;Parent=MsaT038604.1

Gene Sequence

>MsaT038604.1

ATGTCGATCTTCGACGGAACATTCCTCAACACACAACTCTCGAAACACACATCGATCTTCGGTCTCCGTTTATGGGTCGTCATCGGAATCTTAATCGGCGTCGCAATCGTCTTCATCCTCTTCTTAATCTCTCTCTGCGTAGTTTCACGTCGCCGTCACCGCCGTACCGTAGACTACAAAATCACCGGAGCTGCACCAGCAAAGGAAATCCAAGAGATAGTGCATGTTCCAGGATCACACATGCTCCGGCGACCAACTTCGGTACCGGAGATCCACGTGGACATTGGAAGACAAGAACATCGTGTGGTTGTTAAATCTGATAAGGTTTCAAGTGGTGAGAGTAAGGAACAGTGGGAAGCGGGTGTGAAACGACGTCGTCTTTTGGAAGTGGTAGTGTTGGTGGGATTGGTCCTGAAGTGTCACATCTTGGGTGGGGTAGATGGTGGTTATGGAATTGTTTATCATGGTGTTCTTACTGATGGTACTAAAGTTGCTGTCAAAAACCTCTTGAATAACAAGGGCCAAGCTGAGAAAGAATTCAAAGTAGAGGTAGAAGCAATTGGTCGAGTACGACACAAAAATCTTGTTAGGCTGCTTGGATATTGTGTTGAAGGGGCCTACAGGATGCTTGTGTATGAATATGTGGACAATGGCAATCTTGAACAGTGGTTGCATGGGGATGTTGGACCTGTAAGCCCTTTGACATGGGAAATACGCATGAACGTTATATTGGGAACAGCCAGAGGATTGGCCTATCTACATGAGGGTCTTGAACCAAAGGTTGTTCATCGAGATGTGAAGTCAAGTAACATCCTCCTTGATCGCCAATGGAACTCCAAGAAGAGTGATGTTTATAGCTTTGGGATACTAATCATGGAGCTAATTACTGGGAGAAGTCCCGTTGATTATGGTAGACCTCAAGGAGAGGTCAATTTAATAGAGTGGTTGAAGACTATGGTTGGTAATAGAAAAGCTGAGGAAGTAGTTGATCCTAAGCTACCTGAGTTGCCATCTTCAAAAGCTCTTAAACGCGCTCTGTTAATCGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCTAAAATGGGACATGTGATTCACATGCTTGAGGCAGACGACCTCTTATTCCATAATGATCGCAAAACTGGGGGAGAGTCTTCGCGATCTCTTAATGAGTTTCAACCAGAGCTTGAGGACTCAAATTTGGATAAGAGAACAGATGAAGGAATCAGTGGTCAAAGTGAACATGGTAGTGGTAGAAATAATAATCATCAGTCTAGGAGATGA

Protein sequence

>MsaT038604.1

MSIFDGTFLNTQLSKHTSIFGLRLWVVIGILIGVAIVFILFLISLCVVSRRRHRRTVDYKITGAAPAKEIQEIVHVPGSHMLRRPTSVPEIHVDIGRQEHRVVVKSDKVSSGESKEQWEAGVKRRRLLEVVVLVGLVLKCHILGGVDGGYGIVYHGVLTDGTKVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWEIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKKSDVYSFGILIMELITGRSPVDYGRPQGEVNLIEWLKTMVGNRKAEEVVDPKLPELPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNDRKTGGESSRSLNEFQPELEDSNLDKRTDEGISGQSEHGSGRNNNHQSRR*