AlfalfaGEDB | MsaG038630

M. sativa ssp. caerulea / MsaG038630

KEGG: K13425
GO: GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009889 GO:0010033 GO:0010150 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038630	XP_003624081.1	96.178	314	12	0	1	314	1	314	0.0	621

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038630	sp\|O04609\|WRK22_ARATH	47.840	324	101	12	1	306	1	274	6.85e-76	238

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038630	tr\|G7L6P2\|G7L6P2_MEDTR	96.178	314	12	0	1	314	1	314	0.0	621

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TFs/TRs:

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Gene ID	Type	Classification
MsaG038630	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038630	MtrunA17_Chr7g0248691	96.178	314	12	0	1	314	1	314	0.0	621
MsaG038630	MtrunA17_Chr8g0348311	53.392	339	125	6	1	312	1	333	1.90e-89	271
MsaG038630	MtrunA17_Chr2g0293481	49.000	200	72	6	135	306	238	435	2.61e-48	169
MsaG038630	MtrunA17_Chr1g0202461	66.667	111	35	2	132	240	238	348	1.85e-44	156
MsaG038630	MtrunA17_Chr8g0387501	41.048	229	93	7	4	226	9	201	3.78e-40	142
MsaG038630	MtrunA17_Chr2g0284321	60.440	91	30	1	134	218	9	99	1.63e-33	123
MsaG038630	MtrunA17_Chr7g0270051	49.635	137	53	3	134	261	24	153	2.77e-33	124
MsaG038630	MtrunA17_Chr8g0379461	49.587	121	40	2	135	243	45	156	4.79e-32	120
MsaG038630	MtrunA17_Chr2g0319961	58.947	95	28	1	135	218	50	144	2.32e-31	118
MsaG038630	MtrunA17_Chr1g0147881	62.195	82	26	2	135	211	238	319	7.09e-29	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038630	AT4G01250.1	47.840	324	101	12	1	306	1	274	6.96e-77	238
MsaG038630	AT5G52830.1	39.274	303	128	6	3	267	4	288	1.75e-43	153
MsaG038630	AT4G23550.1	42.126	254	115	6	3	249	8	236	4.83e-41	145
MsaG038630	AT2G34830.1	68.367	98	21	1	135	222	186	283	5.37e-41	148
MsaG038630	AT2G34830.2	68.367	98	21	1	135	222	195	292	7.13e-41	148
MsaG038630	AT1G30650.1	62.617	107	27	2	129	222	179	285	1.69e-39	144
MsaG038630	AT5G45050.2	58.879	107	43	1	117	222	1114	1220	5.13e-36	138
MsaG038630	AT5G45050.1	58.879	107	43	1	117	222	1142	1248	5.51e-36	138
MsaG038630	AT5G45050.4	58.333	108	44	1	116	222	1002	1109	6.94e-36	138
MsaG038630	AT3G58710.2	51.695	118	38	2	129	227	34	151	6.54e-35	128

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Find 64 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGAGGAAGAAGAAACAG+AGG	0.577059	7:-78884534	None:intergenic
AACAGAGGATGTAGGTGTGG+TGG	0.629725	7:-78884519	None:intergenic
AACCTCAGGAGGTGAAGAAG+AGG	0.630119	7:+78885431	MsaT038630.1:CDS
AACCTCTTCTTCACCTCCTG+AGG	0.488504	7:-78885433	None:intergenic
AAGTTCATGCAACTCTTCAA+TGG	0.483711	7:-78884669	None:intergenic
ACAAGAAGGTTCAGGTTGCA+GGG	0.532171	7:-78884561	None:intergenic
ACTCTCTTGCTGGTTCAACA+AGG	0.623552	7:+78885343	MsaT038630.1:CDS
AGAAAAGGAAGATTCTTTGA+TGG	0.372979	7:+78885488	MsaT038630.1:CDS
AGAAACAGAGGATGTAGGTG+TGG	0.573812	7:-78884522	None:intergenic
AGAAGATTGGGATCTCCATG+CGG	0.744459	7:+78884469	MsaT038630.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	78884464	78885811	78884464	ID=MsaG038630
Chr7	mRNA	78884464	78885811	78884464	ID=MsaT038630.1;Parent=MsaG038630
Chr7	exon	78884464	78884873	78884464	ID=MsaT038630.1.exon1;Parent=MsaT038630.1
Chr7	CDS	78884464	78884873	78884464	ID=cds.MsaT038630.1;Parent=MsaT038630.1
Chr7	exon	78885012	78885122	78885012	ID=MsaT038630.1.exon2;Parent=MsaT038630.1
Chr7	CDS	78885012	78885122	78885012	ID=cds.MsaT038630.1;Parent=MsaT038630.1
Chr7	exon	78885212	78885632	78885212	ID=MsaT038630.1.exon3;Parent=MsaT038630.1
Chr7	CDS	78885212	78885632	78885212	ID=cds.MsaT038630.1;Parent=MsaT038630.1
Chr7	exon	78885764	78885811	78885764	ID=MsaT038630.1.exon4;Parent=MsaT038630.1
Chr7	CDS	78885764	78885811	78885764	ID=cds.MsaT038630.1;Parent=MsaT038630.1

Gene Sequence

>MsaT038630.1

ATGGAAGAAGATTGGGATCTCCATGCGGTGGTTAGAGGTTGCTCCACTACTTCAACCACCACACCTACATCCTCTGTTTCTTCTTCCTCTGTTTTTCCCCTGCAACCTGAACCTTCTTGTGGCTACTCTTCTATCTTTGGTAGTGAACAAAAACCTCAAATTTTGTCACTTTCTTGTTCTACACACCCTTTTGAAGCTAGAAACTCCATTGAAGAGTTGCATGAACTTTGCAAACCTTTCTTTTCAAGATCATCACAGCCTCTTTCTTTGCAAACTTCTCCTTTGTTTTCTTCATTCTCTTATTCCTCTGCTTCACCCAAATTAGCTCAAACACAAGAGAAACAACAACTTCAAAGAAGTAAACATTCACACCAAGGTGGTTCTCTCACCAACCCAAGATCAAAAAGAAGGAAAAATCAACTTAAGAAAGTTTGTCAAGTACCAGTTGAGAGTCTCTCTTCAGATATATGGGCATGGAGAAAATATGGTCAAAAACCTATAAAAGGGTCACCATATCCAAGGGGCTATTATAGATGTAGCAGTTCAAAAGGGTGTTTAGCAAGAAAACAAGTTGAAAGAAACAGAACAGATCCAACAATGTTCATAGTAACATATACATGTGAACACAATCATCCTGCTCCTACACACAAAAACTCTCTTGCTGGTTCAACAAGGCAGAAGCCATTAACACCACCTCAAGCTGAAACCAACAAAGATCCTACAAAACCCTCTTCTCCTACAACCTCAGGAGGTGAAGAAGAGGTTCAAACTCAAGGAGAAAAGTCAGAAAGTAGAGAAGAAAAGGAAGATTCTTTGATGGATGATGAAGAAGGAGATGAATTTGGTTTATCTGATGTTGTTTTAAGTGATGATTTCTTTGAAAGTTTAGATGAATTTGGTTTCACAGATCCATTTTCTTCTGCTATTGCAATTCCTAATTGGAGAAAACGGAACATTTTGGAGGAATCTTTGCTGACAATGGAAGTGTAG

Protein sequence

>MsaT038630.1

MEEDWDLHAVVRGCSTTSTTTPTSSVSSSSVFPLQPEPSCGYSSIFGSEQKPQILSLSCSTHPFEARNSIEELHELCKPFFSRSSQPLSLQTSPLFSSFSYSSASPKLAQTQEKQQLQRSKHSHQGGSLTNPRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRTDPTMFIVTYTCEHNHPAPTHKNSLAGSTRQKPLTPPQAETNKDPTKPSSPTTSGGEEEVQTQGEKSESREEKEDSLMDDEEGDEFGLSDVVLSDDFFESLDEFGFTDPFSSAIAIPNWRKRNILEESLLTMEV*