AlfalfaGEDB | MsaG038647

M. sativa ssp. caerulea / MsaG038647

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030312 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038647	XP_024626338.1	87.043	656	56	3	1	629	31	684	0.0	1163

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038647	sp\|Q7X8C5\|WAKLB_ARATH	51.861	403	192	2	227	627	334	736	4.97e-143	436

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038647	tr\|Q2HV73\|Q2HV73_MEDTR	87.043	656	56	3	1	629	31	684	0.0	1163

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038647	MtrunA17_Chr7g0248904	87.043	656	56	3	1	629	31	684	0.0	1163
MsaG038647	MtrunA17_Chr7g0248881	68.619	666	169	9	1	629	17	679	0.0	875
MsaG038647	MtrunA17_Chr1g0158231	48.104	422	212	5	202	620	23	440	1.10e-138	412
MsaG038647	MtrunA17_Chr1g0158211	47.529	425	215	5	199	620	43	462	2.52e-137	409
MsaG038647	MtrunA17_Chr1g0158171	47.653	426	212	7	199	620	32	450	2.53e-135	403
MsaG038647	MtrunA17_Chr1g0158251	47.887	426	214	5	197	619	308	728	1.56e-134	411
MsaG038647	MtrunA17_Chr1g0158261	48.210	419	210	5	204	619	305	719	3.26e-134	410
MsaG038647	MtrunA17_Chr1g0158201	50.000	388	189	3	199	584	305	689	6.70e-134	409
MsaG038647	MtrunA17_Chr1g0158291	51.359	368	173	4	254	619	2	365	7.83e-133	394
MsaG038647	MtrunA17_Chr3g0125491	55.891	331	144	2	255	584	4	333	8.29e-133	393

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038647	AT1G16130.1	51.861	403	192	2	227	627	334	736	5.05e-144	436
MsaG038647	AT1G16120.1	52.956	406	185	3	198	602	324	724	2.71e-143	434
MsaG038647	AT1G16150.1	53.906	384	168	4	214	588	324	707	2.16e-139	424
MsaG038647	AT1G16160.1	55.942	345	148	2	254	594	377	721	4.84e-134	410
MsaG038647	AT1G69730.1	56.734	349	149	2	235	581	374	722	5.30e-134	411
MsaG038647	AT1G79670.2	56.534	352	150	2	233	581	307	658	6.45e-134	409
MsaG038647	AT1G79670.1	56.534	352	150	2	233	581	344	695	2.06e-133	409
MsaG038647	AT1G21230.1	49.750	400	196	3	198	593	295	693	1.16e-130	401
MsaG038647	AT1G19390.1	54.011	374	168	3	233	602	376	749	3.39e-129	399
MsaG038647	AT1G21270.1	50.376	399	192	4	198	593	294	689	1.81e-127	393

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Find 123 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGATACATTCTTTC+GGG	0.258101	7:+79086139	MsaT038647.1:CDS
AAAAGTACCTCCTACTGCTG+TGG	0.648974	7:-79087792	None:intergenic
AAAGTTTGACAATGTTCCTG+TGG	0.638617	7:-79087475	None:intergenic
AACAATGAAAGAGGTTTCAA+TGG	0.474803	7:+79088102	MsaT038647.1:CDS
AACATTCAATGATGAAGACG+AGG	0.630837	7:+79087922	MsaT038647.1:CDS
AACTGTTAAGTCTATTGGAG+AGG	0.591508	7:+79086346	MsaT038647.1:CDS
AAGAGAATCACACTTCTGTT+TGG	0.423893	7:-79086422	None:intergenic
AAGAGTGACGTATATAGTTT+CGG	0.467998	7:+79087860	MsaT038647.1:CDS
AAGGGGAGCGAGTATTCGTA+AGG	0.619304	7:+79087178	MsaT038647.1:CDS
AAGTCTATTGGAGAGGCTTA+TGG	0.348345	7:+79086353	MsaT038647.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	79085810	79088288	79085810	ID=MsaG038647
Chr7	mRNA	79085810	79088288	79085810	ID=MsaT038647.1;Parent=MsaG038647
Chr7	exon	79085810	79086238	79085810	ID=MsaT038647.1.exon1;Parent=MsaT038647.1
Chr7	CDS	79085810	79086238	79085810	ID=cds.MsaT038647.1;Parent=MsaT038647.1
Chr7	exon	79086320	79086599	79086320	ID=MsaT038647.1.exon2;Parent=MsaT038647.1
Chr7	CDS	79086320	79086599	79086320	ID=cds.MsaT038647.1;Parent=MsaT038647.1
Chr7	exon	79087108	79088288	79087108	ID=MsaT038647.1.exon3;Parent=MsaT038647.1
Chr7	CDS	79087108	79088288	79087108	ID=cds.MsaT038647.1;Parent=MsaT038647.1

Gene Sequence

>MsaT038647.1

ATGTTACCTCACTCAATCAACTGCCAACAATCATTGCTTAACACCACTGTCACTATTGGTTGCCCAGCAGACAACCCTTCAGCACCAAAAGGATACCTATGCAATAGTCCTCAAAAATCATGCAATTCATTCTTAAGTTTCAGGTCAAAATTTCCTTATTACAGCCCTGTAAGTATTGCTTACCTTCTTGGAAATGAAGCATCAACCATAGCTTCAATCAACAATATCTCAATAAATGAAACACTTCCTTCCAATAGAACAATCATTGTCCCTATCTCGTGCTCATGTTCTGGAAATATCTACCAACATAACACTACTTACACTTTCCAAAAAGCTGATACATTCTTTCGGGTGTTAAATGAAACTTACCAAAGCCTCACAACATGTCAGGCTTTGATGGATCAGAATCATTATGCTCCTGAAAACATTCTGGTTTACACAGTCAACTATGGTGAAACTGTTAAGTCTATTGGAGAGGCTTATGGTGTTGATGAACAAAGCATACTAGAGGCAAATGAGTTGCAAGTGGCACCAAACAGAAGTGTGATTCTCTTTGCGTTGACACCAATATTAGTTCCTCTTAGAGGCAAGAGCTGCAAAGAGGATCCTGATAGTTTCTACTGTACTTGTCTTCATGGAAGGCTTGCAGATGGAAGCTGTAATGAATCTCATGGTCAAAAGTTTCCTACCAAACTGGTTGCTGCATTAGGTGTTGGCATTGGTGCAGGCTTTCTGGTATTGTTTCTGCTGTGTTACAGATTATATCAATACATAAAGAAAAGGGGAGCGAGTATTCGTAAGGAAAAGTTATTCAGGCAAAACGGTGGTTACTTGTTACAAGAGAAGTTATCATCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACAGCAGAGGAGCTCCAAAGAGCAACAGATGACTACAACCAAAGTAGGTTTCTTGGTCAAGGCGGCTATGGCACAGTGTACAAAGGAATGCTACCAGATGGAACCATAGTCGCAGTTAAAAAGTCAAAACACCTTGACAGAAACCAAATAGAAACGTTTGTCAACGAAGTAGTCATCTTATCTCAGATCAACCACAGGAACATTGTCAAACTTTTAGGTTGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATACATTCACAATGGAACACTTTCCCAGCATATCCATGGGAAAGACCGTGATTCATCCCTTTCATGGGAAAGTCGCATTAGAATTGCATGTGAGGTTGCCGGAGCAGTGGCATATATGCATTTCTCAGCTTCTATTCCAATCTTCCATAGAGACATAAAACCAAGTAACATACTCCTAGACAATAACTATAGTGCCAAAGTGTCTGACTTTGGAACATCGAGATCAATTCCGTTAGATAAGACTCATTTAACCACAGCAGTAGGAGGTACTTTTGGGTACATGGATCCTGAATATTTTCAGTCAAGTCAATTTACAGATAAGAGTGACGTATATAGTTTCGGTGTGGTGCTTGTTGAGCTTATAACCGGCAGAAAGCCGATAACATTCAATGATGAAGACGAGGGTCAGAATATGACGGCACATTTCATTTCAGCGATGAAGGAAAACCAACTTTCTCAAATTTTAGATAACGCAGTGGTTAAGGAAGCAAGGCAAGATGAGATTCTTACTATTGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGTAAGAAAAGGCCAACAATGAAAGAGGTTTCAATGGAATTAGAAGCAGTAAGAAAGGTACAGAGTTCCGTACATATCAAAGATGATCAAGAATCACCAAGTGATGGACAATCACTTAGGCATACAACTAATGATACATTTCATGAGTCTACATCGGAAAGCTTTTCGCTATTGTCACAAATGGAGTCCACATACTTCTAA

Protein sequence

>MsaT038647.1

MLPHSINCQQSLLNTTVTIGCPADNPSAPKGYLCNSPQKSCNSFLSFRSKFPYYSPVSIAYLLGNEASTIASINNISINETLPSNRTIIVPISCSCSGNIYQHNTTYTFQKADTFFRVLNETYQSLTTCQALMDQNHYAPENILVYTVNYGETVKSIGEAYGVDEQSILEANELQVAPNRSVILFALTPILVPLRGKSCKEDPDSFYCTCLHGRLADGSCNESHGQKFPTKLVAALGVGIGAGFLVLFLLCYRLYQYIKKRGASIRKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTAEELQRATDDYNQSRFLGQGGYGTVYKGMLPDGTIVAVKKSKHLDRNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEYIHNGTLSQHIHGKDRDSSLSWESRIRIACEVAGAVAYMHFSASIPIFHRDIKPSNILLDNNYSAKVSDFGTSRSIPLDKTHLTTAVGGTFGYMDPEYFQSSQFTDKSDVYSFGVVLVELITGRKPITFNDEDEGQNMTAHFISAMKENQLSQILDNAVVKEARQDEILTIANLAMRCLRLNGKKRPTMKEVSMELEAVRKVQSSVHIKDDQESPSDGQSLRHTTNDTFHESTSESFSLLSQMESTYF*