AlfalfaGEDB | MsaG038724

M. sativa ssp. caerulea / MsaG038724

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038724	XP_039684172.1	86.111	396	32	1	1	396	1	373	0.0	682

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038724	sp\|Q9M219\|MTEFH_ARATH	46.797	359	183	2	40	396	101	453	3.00e-100	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038724	tr\|G7KSF7\|G7KSF7_MEDTR	91.667	360	30	0	37	396	122	481	0.0	681

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TFs/TRs:

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Gene ID	Type	Classification
MsaG038724	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000071	MsaG038724	0.807856	7.007914e-50	1.136523e-47
MsaG000083	MsaG038724	0.802322	9.954910e-49	1.418715e-46
MsaG000140	MsaG038724	0.827322	2.975566e-54	7.983851e-52
MsaG000153	MsaG038724	0.809816	2.681363e-50	4.558783e-48
MsaG000188	MsaG038724	0.806986	1.069290e-49	1.698505e-47
MsaG000306	MsaG038724	0.824470	1.405205e-53	3.483994e-51
MsaG000410	MsaG038724	0.830027	6.650970e-55	1.926370e-52
MsaG000798	MsaG038724	0.861497	1.942777e-63	1.599088e-60
MsaG000854	MsaG038724	0.804180	4.123268e-49	6.133358e-47
MsaG001027	MsaG038724	0.812672	6.480692e-51	1.181735e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038724	MtrunA17_Chr7g0249711	91.667	360	30	0	37	396	122	481	0.0	677
MsaG038724	MtrunA17_Chr8g0335121	56.583	357	152	2	40	396	108	461	4.80e-139	409

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038724	AT3G60400.1	46.797	359	183	2	40	396	101	453	3.05e-101	313
MsaG038724	AT4G19650.2	22.817	355	245	8	40	386	151	484	1.72e-14	75.9
MsaG038724	AT4G19650.1	22.817	355	245	8	40	386	134	467	1.80e-14	75.9
MsaG038724	AT5G06811.1	24.277	346	238	9	41	379	136	464	3.56e-11	65.5

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Find 92 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAGCTTCAAGACTTC+AGG	0.367485	7:+79981198	None:intergenic
AAATGTAGATTCATGGCATG+AGG	0.630954	7:-79981403	MsaT038724.1:CDS
AACACACCTAACTTCTCCCA+AGG	0.625967	7:+79981663	None:intergenic
AAGATTATCAAGATGGTTTG+AGG	0.456096	7:-79980939	MsaT038724.1:CDS
AAGTGATCGCAATGAAGACC+GGG	0.587085	7:-79980965	MsaT038724.1:CDS
AATCAAGCTTCAAGACTTCA+GGG	0.502740	7:+79981199	None:intergenic
AATCTCTTGGATCGTTTGCA+TGG	0.518346	7:-79980826	MsaT038724.1:CDS
AATGGATGGAAGGGTAATGT+AGG	0.497129	7:-79981348	MsaT038724.1:CDS
AGCTTTGAGAATTCAATTCT+TGG	0.365719	7:+79980760	None:intergenic
AGGGTATGGATTTGGTGTTG+TGG	0.544585	7:+79981949	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	79979055	79982011	79979055	ID=MsaG038724
Chr7	mRNA	79979055	79982011	79979055	ID=MsaT038724.1;Parent=MsaG038724
Chr7	exon	79979055	79979189	79979055	ID=MsaT038724.1.exon3;Parent=MsaT038724.1
Chr7	CDS	79979055	79979189	79979055	ID=cds.MsaT038724.1;Parent=MsaT038724.1
Chr7	exon	79980750	79981797	79980750	ID=MsaT038724.1.exon2;Parent=MsaT038724.1
Chr7	CDS	79980750	79981797	79980750	ID=cds.MsaT038724.1;Parent=MsaT038724.1
Chr7	exon	79981887	79982011	79981887	ID=MsaT038724.1.exon1;Parent=MsaT038724.1
Chr7	CDS	79981887	79982011	79981887	ID=cds.MsaT038724.1;Parent=MsaT038724.1

Gene Sequence

>MsaT038724.1

ATGTCATTCACGAAGCTCAAAAAGCCCTCACTGACTACCTCCACAACACCAAATCCATACCCTTCACCTATGCAGAACACATGGGCAACAACACTCTCTGTTCCCTCACAAATCTCATTTCAAAGCATAGGGATAGATTATACTTTGGTTTCTGATTTGTTACCCAATGATAAGTTGTTCTTTTCAGAAGATAAGACTCTTCTAGAAGCTGCTTGTGTGCTTTGTGATTTTGGGTTTCCTTGGGAGAAGTTAGGTGTGTTGTATATGGAGAAGAGTTCTATATTTGGGAAAAGTGTTGAAGAGTTGAAATTGAGGCTTTGTTGGGTTAAAAGACGTGGTTTTGGTAATGTTGAAGTTATTGGGATTTGTTTGGCTTTTCCTTTTGTTTTGAGTGAGGAACTGGGTCAAATTCAAAAGGGTGTTTTTGGAATTGATGAGTTGTTTAGTGATCTAAAGTTGATTTTTTTAGATAATTCTTTGGGGAGTTATGTTGAAGGAAATGTAGATTCATGGCATGAGGTGTGTAGAAAGTTGCGATTGTTTTATGATTTGAATGGATGGAAGGGTAATGTAGGAGAACTCATGGGGAGGAATAAAAGTATATTTGTTGATCACAAAGAAGATGAGATAGTACATAAAGTAGAGTATTTCTGTAGATTTGGTGGAAAGAAGGAGGAAGTAGCTTTGTTGATTCTACAATGCCCTGAAGTCTTGAAGCTTGATTTGGAGAAGACGGTGATTAATGTTTTGGAGCTGTTGAAACACTTTGGCATGAACTCTAAAGATTTGGAGGATGTTATTGAAAATTTTGGTCATGTGCTGGGAACAATTAGAATGGTTAATCTACCAAATGTGATGAGAGCTATGAGTTTGAAAGAATGGTTCTGTGATAAGTTAAAGGGTGGACATCATCGGTTGTTAGCGGATTATATCACAAGTGATCGCAATGAAGACCGGGATAAAGATTATCAAGATGGTTTGAGGAGAATTCTCATTTCACGAGCTCGAGTTCATAGCATTAATAAGTTGAATTTCTTACATAGGTTAGGCTTTGGAGAAAATGCATTGACTATGAATCTCTTGGATCGTTTGCATGGCACAAGCAGTGAGTTACAGGAAAGATTTGACTGCCTTTTACGCCCAAGAATTGAATTCTCAAAGCTCTGCATGATGGATGGTGATTTGCCCTGTAGCAATGAAGAAGCTATGCTGCTGTTGACAAGTGGAGCTTGCAGTACTCAATCAGATGGTGATTTCGAAAGTCTGCGGATGTATGGTGATGCTGGAGGTTCTGTTGGGGTAATCTGA

Protein sequence

>MsaT038724.1

MSFTKLKKPSLTTSTTPNPYPSPMQNTWATTLSVPSQISFQSIGIDYTLVSDLLPNDKLFFSEDKTLLEAACVLCDFGFPWEKLGVLYMEKSSIFGKSVEELKLRLCWVKRRGFGNVEVIGICLAFPFVLSEELGQIQKGVFGIDELFSDLKLIFLDNSLGSYVEGNVDSWHEVCRKLRLFYDLNGWKGNVGELMGRNKSIFVDHKEDEIVHKVEYFCRFGGKKEEVALLILQCPEVLKLDLEKTVINVLELLKHFGMNSKDLEDVIENFGHVLGTIRMVNLPNVMRAMSLKEWFCDKLKGGHHRLLADYITSDRNEDRDKDYQDGLRRILISRARVHSINKLNFLHRLGFGENALTMNLLDRLHGTSSELQERFDCLLRPRIEFSKLCMMDGDLPCSNEEAMLLLTSGACSTQSDGDFESLRMYGDAGGSVGVI*