AlfalfaGEDB | MsaG038810

M. sativa ssp. caerulea / MsaG038810

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038810	XP_013449407.1	96.846	761	24	0	1	761	1	761	0.0	1523

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038810	sp\|Q39183\|D6KL2_ARATH	66.536	511	153	6	260	761	85	586	0.0	681

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038810	tr\|A0A072UC53\|A0A072UC53_MEDTR	96.846	761	24	0	1	761	1	761	0.0	1523

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038810	MtrunA17_Chr7g0250631	96.846	761	24	0	1	761	1	761	0.0	1523
MsaG038810	MtrunA17_Chr8g0335351	77.232	773	162	7	1	761	1	771	0.0	1182
MsaG038810	MtrunA17_Chr2g0290691	67.197	503	141	7	270	761	115	604	0.0	684
MsaG038810	MtrunA17_Chr7g0227331	64.694	490	142	7	282	761	150	618	0.0	624
MsaG038810	MtrunA17_Chr6g0449401	58.077	520	159	6	281	761	180	679	0.0	609
MsaG038810	MtrunA17_Chr7g0266031	58.798	466	177	7	259	714	383	843	0.0	551
MsaG038810	MtrunA17_Chr1g0179101	58.599	471	174	9	299	761	402	859	0.0	548
MsaG038810	MtrunA17_Chr2g0309421	58.811	471	163	10	302	761	121	571	0.0	533
MsaG038810	MtrunA17_Chr8g0356291	58.986	434	167	7	334	761	96	524	1.40e-179	524
MsaG038810	MtrunA17_Chr3g0080101	63.104	393	136	4	329	715	380	769	3.51e-178	530

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG038810	AT2G44830.2	64.721	788	225	24	1	761	4	765	910
MsaG038810	AT2G44830.3	64.721	788	225	24	1	761	4	765	910
MsaG038810	AT2G44830.1	64.721	788	225	24	1	761	4	765	910
MsaG038810	AT5G47750.1	66.536	511	153	6	260	761	85	586	681
MsaG038810	AT4G26610.1	61.690	509	169	8	255	761	22	506	622
MsaG038810	AT5G55910.2	64.286	476	151	7	293	761	35	498	609
MsaG038810	AT5G55910.1	64.286	476	151	7	293	761	35	498	609
MsaG038810	AT5G40030.1	63.801	442	140	8	325	761	73	499	587
MsaG038810	AT3G27580.2	63.805	431	146	5	296	718	109	537	556
MsaG038810	AT3G27580.1	63.805	431	146	5	296	718	109	537	556

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Find 201 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCCTTTCAAAGGATC+AGG	0.476423	7:-80957313	MsaT038810.1:CDS
AAACAACGCACCTAAGAGAA+AGG	0.572342	7:+80957680	None:intergenic
AAACAGCACCCTTTCTTTGA+AGG	0.368314	7:-80957139	MsaT038810.1:CDS
AAAGAGCCACAGAACCGTCT+TGG	0.507088	7:-80957187	MsaT038810.1:CDS
AAAGCATGCAGATCTCCGCC+CGG	0.630026	7:+80959412	None:intergenic
AAAGCTGTAATAAGAGAAGC+TGG	0.545303	7:-80960678	MsaT038810.1:CDS
AACCGTCTTGGAGTGAAGAG+GGG	0.657915	7:-80957175	MsaT038810.1:CDS
AACGAAGAGCACGTCCTTGA+AGG	0.443303	7:-80960238	MsaT038810.1:CDS
AACGTACTAGTCCGAGAAGA+CGG	0.575392	7:-80957727	MsaT038810.1:CDS
AAGAGCAGCAGTGATTCTTT+TGG	0.319984	7:-80960378	MsaT038810.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	80956949	80960772	80956949	ID=MsaG038810
Chr7	mRNA	80956949	80960772	80956949	ID=MsaT038810.1;Parent=MsaG038810
Chr7	exon	80956949	80957828	80956949	ID=MsaT038810.1.exon2;Parent=MsaT038810.1
Chr7	CDS	80956949	80957828	80956949	ID=cds.MsaT038810.1;Parent=MsaT038810.1
Chr7	exon	80959367	80960772	80959367	ID=MsaT038810.1.exon1;Parent=MsaT038810.1
Chr7	CDS	80959367	80960772	80959367	ID=cds.MsaT038810.1;Parent=MsaT038810.1

Gene Sequence

>MsaT038810.1

ATGGAAAGGGTTGCAGAGACAAAGGTACTTCCTCGGACCTTGCCAGTTCTGGTTGAGGTATCTGATGCACACAAAGCTGTAATAAGAGAAGCTGGTCAGAGACTAACGGGGGAGGATGTTTCATGTGCCCGTGCGGTTTCAGCAAGAGAATTGAATCAGTTTTCAAAAGCACAGGATGGCCCTATGACACTCCTGGCCTCCAGTAGAGAAGTGGCTCAGTTGTCAAATGCAAGAATTCTTTTGGTAAGAGAAGATACAGGATTCAATACGCGATCTTCTGAAAAACTTGTCTCGGCTGCACCTACAAGAACACCAAAAGGAAAAGCCTCTTTTCCAGACCACAAAGAACTCTTGCCTGATATCGAGATGTTGAAGAGCAGCAGTGATTCTTTTGGGGAAACTGATCCAAGTTCATTTGCTGGTGCTAGTCATCCCCCAGAACCTATCGATACTGATCTCATGAGAACGGTTTATGTACCAATAGGTCAGAACAAATCTGAGGCTGGATGCATAACGAAGAGCACGTCCTTGAAGGGTCCTTTCCTAGAAGATCTTTCGATTCGTAATCTCACTAAGAAACCAATCCTAGCTGTTGTTTCTCCTGCAGAAAGTATGGCTGAAGAATCAAATGACATGCGGAACTCAGCCTTACCGTTTTCAGGCGCTCGTGCATCGCAGAATACCGAGAACTGTCTACTTCCCCCGGGTTCTGAGGAGAACGATTGCGTTTGGGATTCTTCTTTGCCTCCAAGTGGAAATGTCAGTCCACACAGTAGCGTTGATAGTACCAGTGTTGTGAGAACAATGAGCATTGCCAATAGTTGTGCGAGTACATATCGCAGCGATGCATTGACTAGTGATGGCATGCTTAGTATAGACAAAAATTGTGATAGTATTAAAGGAAATGTTAGAGGGGATTCACTTGAGAGTGCAAAAACTAGTGCTAGTCGAGCAAGTGATAGCAGTGGCCTCAGCGATGACAGCAACTGGAGTAACATCACTGCTAGTGCCAGTAAACCACATAAAGGAAATGACCCTAGGTGGAAGGCTATCCTTGCCGTCCGAGCACGGGATGGAAATTTGGGCATGAGTCATTTTAAGTTACTTAGACGACTTGGTTGTGGTGATATTGGAAGCGTGTATCTCTCCGAGTTGAGTGCAACTCGGTGTTATTTTGCAATGAAAGTTATGGACAAGGCATCCCTATCTGCCAGAAAGAAGCTGATTAGAGCGCAGACAGAAAGGGAGATATTGCAGTTGCTGGACCATCCATTTCTACCTATGCTGTATACACATTTTGAGACCGACAGATTCTCATGTTTGGTAATGGAGTACTGTCCGGGCGGAGATCTGCATGCTTTAAGGCAACGGCAACCAGGGAAACATTTCTCAGAGTATGCTGCACGTTTTTATGCTGCAGAGGTCCTGTTGGCAATTGAATATCTTCACATGCTCGGAGTTGTTTATCGAGACCTTAAACCTGAAAACGTACTAGTCCGAGAAGACGGTCACATAATGCTCTCGGATTTCGACCTTTCTCTTAGGTGCGTTGTTTCACCTACCCTTATCAGAACTCACGATGGCGACCCTTCAAAACGAGCAGGTGCATTCTGTGTCCAGCCTGCTTGTATCGAGCCTACATCAGTATGCATTCAGCCTGCCTGTTTTTTGCCGAAGCTTTTTTCTCAGAAAAATAAGAAGTCACGGAAACCTAAACCTGATCCTGGCCTATCAACTGATTCACTTCCGGAACTTCTTGCTGAGCCTACAACAGCTCGGTCGATGTCCTTCGTTGGTACTCATGAGTATCTCGCCCCTGAAATTATCAAAGGAGAAGGCCATGGAAGTGCAGTTGATTGGTGGACATTTGGAATTTTCTTGCACGAGTTATTGTATGGTAAAACGCCTTTCAAAGGATCAGGAAACCGAGCTACACTGTTCAATGTAGTTGGCCAGCAGCTCAAGTTTCCTGAGTCGCCGGCTACGAGTTATGCAAGCCGTGATCTGATCCGAGGTTTGCTTGCAAAAGAGCCACAGAACCGTCTTGGAGTGAAGAGGGGTGCAACTGAACTCAAACAGCACCCTTTCTTTGAAGGCGTGAACTGGGCGTTGATTAGGTGCAGCACACCACCGGAAATTCCAAGGCCGATGGAAAGTGAACTACCGGCTAAATTTGAAGCCGTTGAAAATACTGTTGGGGTTGGGAGCAATAGTAACAAGATGGTTGGTGGTAATAATGAGATGAAGTCTGGGGGTGGTAAATATCTTGACTTTGAGTTCTTTTAG

Protein sequence

>MsaT038810.1

MERVAETKVLPRTLPVLVEVSDAHKAVIREAGQRLTGEDVSCARAVSARELNQFSKAQDGPMTLLASSREVAQLSNARILLVREDTGFNTRSSEKLVSAAPTRTPKGKASFPDHKELLPDIEMLKSSSDSFGETDPSSFAGASHPPEPIDTDLMRTVYVPIGQNKSEAGCITKSTSLKGPFLEDLSIRNLTKKPILAVVSPAESMAEESNDMRNSALPFSGARASQNTENCLLPPGSEENDCVWDSSLPPSGNVSPHSSVDSTSVVRTMSIANSCASTYRSDALTSDGMLSIDKNCDSIKGNVRGDSLESAKTSASRASDSSGLSDDSNWSNITASASKPHKGNDPRWKAILAVRARDGNLGMSHFKLLRRLGCGDIGSVYLSELSATRCYFAMKVMDKASLSARKKLIRAQTEREILQLLDHPFLPMLYTHFETDRFSCLVMEYCPGGDLHALRQRQPGKHFSEYAARFYAAEVLLAIEYLHMLGVVYRDLKPENVLVREDGHIMLSDFDLSLRCVVSPTLIRTHDGDPSKRAGAFCVQPACIEPTSVCIQPACFLPKLFSQKNKKSRKPKPDPGLSTDSLPELLAEPTTARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLAKEPQNRLGVKRGATELKQHPFFEGVNWALIRCSTPPEIPRPMESELPAKFEAVENTVGVGSNSNKMVGGNNEMKSGGGKYLDFEFF*