AlfalfaGEDB | MsaG038878

M. sativa ssp. caerulea / MsaG038878

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0010022 GO:0010073 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048507 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038878	XP_003624437.1	77.000	200	33	7	1	199	1	188	1.62e-85	260

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038878	sp\|Q9FFX4\|KNU_ARATH	66.000	50	17	0	40	89	36	85	7.15e-14	69.3

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038878	tr\|G7KW55\|G7KW55_MEDTR	77.000	200	33	7	1	199	1	188	7.73e-86	260

TFs/TRs:

Gene ID	Type	Classification
MsaG038878	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038878	MtrunA17_Chr7g0251581	77.000	200	33	7	1	199	1	188	1.49e-89	260
MsaG038878	MtrunA17_Chr7g0254221	32.381	210	74	7	1	199	4	156	1.05e-19	81.6
MsaG038878	MtrunA17_Chr1g0207691	52.830	53	19	1	39	85	63	115	1.53e-12	63.5
MsaG038878	MtrunA17_Chr1g0149811	75.758	33	8	0	40	72	94	126	5.70e-12	62.8
MsaG038878	MtrunA17_Chr4g0072571	75.758	33	8	0	40	72	45	77	7.15e-12	61.2
MsaG038878	MtrunA17_Chr8g0376021	71.429	35	10	0	38	72	60	94	2.52e-11	60.5
MsaG038878	MtrunA17_Chr3g0110091	72.727	33	9	0	40	72	86	118	4.29e-11	60.1
MsaG038878	MtrunA17_Chr4g0001081	75.758	33	8	0	40	72	67	99	4.42e-11	60.1
MsaG038878	MtrunA17_Chr4g0053691	70.588	34	10	0	40	73	67	100	6.73e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038878	AT5G14010.1	66.000	50	17	0	40	89	36	85	7.27e-15	69.3
MsaG038878	AT5G57520.1	54.545	55	24	1	40	94	50	103	1.13e-13	65.9
MsaG038878	AT1G24625.1	72.727	33	9	0	40	72	57	89	9.60e-11	59.3

Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCATCATCATTACCCTTAT+TGG	0.093745	7:-81857589	MsaT038878.1:CDS
TATGGTTATGCTTCTGGTTT+TGG	0.247711	7:-81857476	MsaT038878.1:CDS
GGTTCCATTTGTTGCCAATA+AGG	0.254384	7:+81857575	None:intergenic
TTTCAAGTTTGTGAGCATTT+TGG	0.265375	7:+81857744	None:intergenic
GATCTTCTGCTAGTTGTTCT+TGG	0.275259	7:+81857860	None:intergenic
ATGCTTCCTTGCAATGGTTA+TGG	0.317002	7:-81857494	MsaT038878.1:CDS
GGTGGTGTTGATCAGGTTGA+TGG	0.328750	7:+81857700	None:intergenic
AATGGTTATGGTTATGCTTC+TGG	0.361952	7:-81857482	MsaT038878.1:CDS
GTTCCATTTGTTGCCAATAA+GGG	0.373916	7:+81857576	None:intergenic
AGAAGCAGAAGCAGCATTGT+TGG	0.377902	7:+81857415	None:intergenic
TGTTGGTGGTGGTGTTGATC+AGG	0.386212	7:+81857693	None:intergenic
TGTGGTGTTTGAAACTGTAT+AGG	0.418717	7:+81857554	None:intergenic
TTACCCTTATTGGCAACAAA+TGG	0.422059	7:-81857579	MsaT038878.1:CDS
AACATTGTTGGTGTTGTTGT+TGG	0.428219	7:+81857676	None:intergenic
GTTGGTGTTGTTGTTGGTGG+TGG	0.434485	7:+81857682	None:intergenic
TGTGGTGGTGGTGATGAAAA+AGG	0.435180	7:+81857650	None:intergenic
TTTCATGAGGAACTCGTAGA+TGG	0.442852	7:+81857907	None:intergenic
CATCCTATGCTTCCTTGCAA+TGG	0.462936	7:-81857500	MsaT038878.1:CDS
TTCTACACTTCTCAAGCTCT+TGG	0.466221	7:-81857773	MsaT038878.1:CDS
TACACTTCTCAAGCTCTTGG+TGG	0.467223	7:-81857770	MsaT038878.1:CDS
ATTGTTGGTGTTGTTGTTGG+TGG	0.489563	7:+81857679	None:intergenic
CTTCTGCTAGTTGTTCTTGG+TGG	0.497901	7:+81857863	None:intergenic
CTTGAGAAGTGTAGAACTTA+CGG	0.498780	7:+81857780	None:intergenic
GCTTCAACATGTTGATGTTG+TGG	0.525749	7:+81857536	None:intergenic
AGGAACTCGTAGATGGCTGA+AGG	0.562270	7:+81857914	None:intergenic
TAACCATTGCAAGGAAGCAT+AGG	0.562677	7:+81857497	None:intergenic
GAAACATGTGACTGTGGTGG+TGG	0.592935	7:+81857638	None:intergenic
AAGTTTGTTGTTGTTTCATG+AGG	0.595946	7:+81857894	None:intergenic
GCATAACCATAACCATTGCA+AGG	0.611111	7:+81857488	None:intergenic
TTCTTCAGAGATGAAGAGTG+AGG	0.651759	7:+81857342	None:intergenic
GTTTCTGAACAACATGAACA+AGG	0.674380	7:-81857620	MsaT038878.1:CDS
GGAACTCGTAGATGGCTGAA+GGG	0.682433	7:+81857915	None:intergenic
TTGTTGGTGAAAACATAGTG+AGG	0.685351	7:+81857431	None:intergenic
TCTGAACAACATGAACAAGG+TGG	0.702272	7:-81857617	MsaT038878.1:CDS
TCAGAAGCATCAACAAACTG+AGG	0.702630	7:+81857380	None:intergenic
GAGTGAGGTCAAGATTGACA+TGG	0.709894	7:+81857357	None:intergenic
TCAGAAACATGTGACTGTGG+TGG	0.727680	7:+81857635	None:intergenic
TGTTCAGAAACATGTGACTG+TGG	0.756060	7:+81857632	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	81857346	81857945	81857346	ID=MsaG038878
Chr7	mRNA	81857346	81857945	81857346	ID=MsaT038878.1;Parent=MsaG038878
Chr7	exon	81857346	81857945	81857346	ID=MsaT038878.1.exon1;Parent=MsaT038878.1
Chr7	CDS	81857346	81857945	81857346	ID=cds.MsaT038878.1;Parent=MsaT038878.1

Gene Sequence

>MsaT038878.1

ATGGCAGACCCTTCAGCCATCTACGAGTTCCTCATGAAACAACAACAAACTTCATCATCACCACCAAGAACAACTAGCAGAAGATCATCACAGCAACAACTTGCAGCTTCAACAACAAGAACTTTTCAGTGTCAATATTGTCACCGTAAGTTCTACACTTCTCAAGCTCTTGGTGGTCACCAAAATGCTCACAAACTTGAAAGAGCTGCTGCTAGATCAAAAACCATCAACCTGATCAACACCACCACCAACAACAACACCAACAATGTTGTTCCTTTTTCATCACCACCACCACAGTCACATGTTTCTGAACAACATGAACAAGGTGGTTTCTTTCATCATCATTACCCTTATTGGCAACAAATGGAACCTATACAGTTTCAAACACCACAACATCAACATGTTGAAGCAACAAACACTTTTCATCCTATGCTTCCTTGCAATGGTTATGGTTATGCTTCTGGTTTTGGTTTTGGTGCTTCATCTTCAACTCCTCACTATGTTTTCACCAACAATGCTGCTTCTGCTTCTGCTTCTACTACTCCTCAGTTTGTTGATGCTTCTGACCATGTCAATCTTGACCTCACTCTTCATCTCTGA

Protein sequence

>MsaT038878.1

MADPSAIYEFLMKQQQTSSSPPRTTSRRSSQQQLAASTTRTFQCQYCHRKFYTSQALGGHQNAHKLERAAARSKTINLINTTTNNNTNNVVPFSSPPPQSHVSEQHEQGGFFHHHYPYWQQMEPIQFQTPQHQHVEATNTFHPMLPCNGYGYASGFGFGASSSTPHYVFTNNAASASASTTPQFVDASDHVNLDLTLHL*