AlfalfaGEDB | MsaG038883

M. sativa ssp. caerulea / MsaG038883

KEGG: -
GO: -
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038883	RHN47318.1	79.114	158	33	0	1	158	1	158	8.42e-92	274

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038883	sp\|Q75HE5\|NAC2_ORYSJ	39.098	133	75	4	4	133	11	140	5.84e-23	95.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038883	tr\|A0A396H3F5\|A0A396H3F5_MEDTR	79.114	158	33	0	1	158	1	158	4.02e-92	274

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TFs/TRs:

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Gene ID	Type	Classification
MsaG038883	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000070	MsaG038883	0.803682	5.226195e-49	7.684787e-47
MsaG000083	MsaG038883	0.817937	4.433129e-52	9.238085e-50
MsaG000113	MsaG038883	0.849437	6.148147e-60	3.269029e-57
MsaG000496	MsaG038883	0.817427	5.771148e-52	1.186940e-49
MsaG000643	MsaG038883	0.802689	8.370332e-49	1.202911e-46
MsaG001004	MsaG038883	0.810802	1.646469e-50	2.867306e-48
MsaG001323	MsaG038883	0.820582	1.114974e-52	2.490255e-50
MsaG001600	MsaG038883	0.801302	1.608642e-48	2.239856e-46
MsaG002462	MsaG038883	0.801868	1.232669e-48	1.738623e-46
MsaG003072	MsaG038883	0.825324	8.855191e-54	2.247484e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038883	MtrunA17_Chr7g0251661	79.114	158	33	0	1	158	1	158	7.74e-96	274
MsaG038883	MtrunA17_Chr7g0251671	71.975	157	44	0	1	157	1	157	1.46e-81	238
MsaG038883	MtrunA17_Chr7g0251651	63.043	184	60	3	3	178	11	194	1.05e-80	237
MsaG038883	MtrunA17_Chr3g0124761	34.868	152	89	5	6	154	3	147	4.41e-22	90.1
MsaG038883	MtrunA17_Chr3g0139331	35.338	133	80	5	7	135	8	138	1.44e-21	89.7
MsaG038883	MtrunA17_Chr6g0461661	37.692	130	75	4	8	133	16	143	2.22e-21	89.4
MsaG038883	MtrunA17_Chr7g0253011	36.364	132	76	5	8	133	15	144	1.98e-20	87.0
MsaG038883	MtrunA17_Chr7g0252971	31.544	149	89	4	7	144	5	151	1.07e-19	84.3
MsaG038883	MtrunA17_Chr1g0147421	35.821	134	79	5	7	135	24	155	4.70e-19	82.8
MsaG038883	MtrunA17_Chr8g0359921	31.206	141	88	5	6	143	10	144	6.38e-19	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038883	AT5G13180.1	37.037	135	76	4	3	133	7	136	8.40e-24	94.4
MsaG038883	AT5G18270.1	37.209	129	76	4	8	133	19	145	8.30e-22	90.5
MsaG038883	AT5G18270.2	36.434	129	77	4	8	133	19	145	1.52e-21	89.7
MsaG038883	AT3G10500.1	35.036	137	84	4	10	142	9	144	3.50e-21	90.1
MsaG038883	AT5G04410.1	35.433	127	78	3	10	133	9	134	4.25e-21	90.1
MsaG038883	AT1G77450.1	33.758	157	94	5	1	154	1	150	6.22e-21	87.0
MsaG038883	AT5G63790.1	33.824	136	83	4	6	138	46	177	2.30e-20	86.3
MsaG038883	AT5G63790.2	33.824	136	83	4	6	138	56	187	2.51e-20	86.3
MsaG038883	AT5G08790.1	33.088	136	84	4	6	138	3	134	3.35e-20	85.5
MsaG038883	AT1G76420.1	36.641	131	77	5	7	133	19	147	3.46e-20	86.3

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Find 46 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCCTGGCAGCCTCCA+TGG	0.506870	7:+81955382	None:intergenic
AAATTCATGCATCCACCATC+GGG	0.513722	7:+81954846	None:intergenic
AATATGGACGCAAGACGAGC+TGG	0.462643	7:-81954988	MsaT038883.1:CDS
ACATGACATTTGGAAAAGGT+TGG	0.502196	7:+81955431	None:intergenic
ACATGAGTTCATGGAGAGGG+AGG	0.614894	7:+81954528	None:intergenic
ACTGAGCCATGGAGGCTGCC+AGG	0.492712	7:-81955388	MsaT038883.1:CDS
ACTTGCATCCTCCATTAGTG+TGG	0.678198	7:+81954563	None:intergenic
AGCACATTTGTTTACTGGAG+TGG	0.509000	7:-81954892	MsaT038883.1:CDS
AGGTGGCAAAACTGAGAAGA+AGG	0.540768	7:-81954589	MsaT038883.1:CDS
AGTATTATTTCTTTGATCTC+AGG	0.394952	7:-81955026	MsaT038883.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	81954536	81955554	81954536	ID=MsaG038883
Chr7	mRNA	81954536	81955554	81954536	ID=MsaT038883.1;Parent=MsaG038883
Chr7	exon	81954536	81954643	81954536	ID=MsaT038883.1.exon3;Parent=MsaT038883.1
Chr7	CDS	81954536	81954643	81954536	ID=cds.MsaT038883.1;Parent=MsaT038883.1
Chr7	exon	81954816	81955075	81954816	ID=MsaT038883.1.exon2;Parent=MsaT038883.1
Chr7	CDS	81954816	81955075	81954816	ID=cds.MsaT038883.1;Parent=MsaT038883.1
Chr7	exon	81955386	81955554	81955386	ID=MsaT038883.1.exon1;Parent=MsaT038883.1
Chr7	CDS	81955386	81955554	81955386	ID=cds.MsaT038883.1;Parent=MsaT038883.1

Gene Sequence

>MsaT038883.1

ATGGCTGTAGCTAATGCTGAGCTTGATCTACCTGCTGGATTCAGGTTTGATCCGACCGATCGTCAACTTGTTGAGTGCTACCTGACGAAGAAAATCTGCAACCAACCTTTTCCAAATGTCATGTCTGAATTTGATATATTTCAAACTGAGCCATGGAGGCTGCCAGGAGGTAATAGGTACTCTTTGCAGCACAGGAAGTATTATTTCTTTGATCTCAGGAACAGTCGGTTCGAAAATATGGACGCAAGACGAGCTGGAAATGGTGAATGGAGAGTAGTTGAAAAGAACAAGGAGTATGCTCATTCAAACAATCAATTGATTGTGAGAAAGAGCACATTTGTTTACTGGAGTGGGCAAGGAAATCGAGCTCTGATGACCCGATGGTGGATGCATGAATTTGTCATCGGTAGAATTTTTGATCCAACTAGGCTGTTGGTGCCTATCGGATCTTTAAGATATGAAGGTGGCAAAACTGAGAAGAAGGCCACCACACTAATGGAGGATGCAAGTGTTTCTGCCCCTCCTCCCTCTCCATGA

Protein sequence

>MsaT038883.1

MAVANAELDLPAGFRFDPTDRQLVECYLTKKICNQPFPNVMSEFDIFQTEPWRLPGGNRYSLQHRKYYFFDLRNSRFENMDARRAGNGEWRVVEKNKEYAHSNNQLIVRKSTFVYWSGQGNRALMTRWWMHEFVIGRIFDPTRLLVPIGSLRYEGGKTEKKATTLMEDASVSAPPPSP*