Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG038884 | KEH23482.1 | 90.968 | 155 | 14 | 0 | 1 | 155 | 1 | 155 | 2.17e-101 | 297 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG038884 | sp|Q75HE5|NAC2_ORYSJ | 37.594 | 133 | 77 | 4 | 4 | 133 | 11 | 140 | 8.11e-21 | 89.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG038884 | tr|A0A072U1D6|A0A072U1D6_MEDTR | 90.968 | 155 | 14 | 0 | 1 | 155 | 1 | 155 | 1.03e-101 | 297 |
Gene ID | Type | Classification |
---|---|---|
MsaG038884 | TF | NAC |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG046006 | MsaG038884 | 0.804173 | 4.135562e-49 | 6.150778e-47 |
MsaG023539 | MsaG038884 | 0.821495 | 6.885165e-53 | 1.575429e-50 |
MsaG027128 | MsaG038884 | 0.800046 | 2.893454e-48 | 3.916161e-46 |
MsaG027858 | MsaG038884 | 0.819986 | 1.524660e-52 | 3.352040e-50 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG038884 | MtrunA17_Chr7g0251661 | 90.909 | 143 | 13 | 0 | 1 | 143 | 1 | 143 | 1.63e-96 | 275 |
MsaG038884 | MtrunA17_Chr7g0251671 | 79.021 | 143 | 30 | 0 | 1 | 143 | 1 | 143 | 8.39e-81 | 236 |
MsaG038884 | MtrunA17_Chr7g0251651 | 66.883 | 154 | 50 | 1 | 3 | 155 | 11 | 164 | 1.35e-70 | 211 |
MsaG038884 | MtrunA17_Chr3g0124761 | 33.824 | 136 | 83 | 4 | 6 | 138 | 3 | 134 | 7.64e-21 | 86.3 |
MsaG038884 | MtrunA17_Chr3g0139331 | 33.835 | 133 | 82 | 5 | 7 | 135 | 8 | 138 | 5.13e-20 | 84.7 |
MsaG038884 | MtrunA17_Chr7g0252971 | 31.690 | 142 | 84 | 4 | 3 | 133 | 1 | 140 | 6.13e-19 | 81.6 |
MsaG038884 | MtrunA17_Chr7g0253011 | 34.091 | 132 | 79 | 5 | 8 | 133 | 15 | 144 | 8.33e-19 | 81.6 |
MsaG038884 | MtrunA17_Chr8g0359921 | 29.333 | 150 | 97 | 5 | 6 | 152 | 10 | 153 | 1.01e-18 | 80.9 |
MsaG038884 | MtrunA17_Chr4g0042561 | 32.117 | 137 | 86 | 5 | 4 | 136 | 3 | 136 | 1.26e-18 | 79.7 |
MsaG038884 | MtrunA17_Chr5g0433781 | 31.373 | 153 | 101 | 3 | 6 | 155 | 2 | 153 | 2.08e-18 | 80.9 |
MsaG038884 | MtrunA17_Chr3g0109821 | 32.051 | 156 | 98 | 5 | 6 | 154 | 2 | 156 | 4.77e-18 | 80.1 |
MsaG038884 | MtrunA17_Chr4g0047841 | 34.375 | 128 | 78 | 4 | 10 | 133 | 15 | 140 | 4.95e-18 | 79.3 |
MsaG038884 | MtrunA17_Chr6g0461661 | 32.624 | 141 | 88 | 5 | 4 | 139 | 12 | 150 | 5.45e-18 | 79.3 |
MsaG038884 | MtrunA17_Chr3g0130731 | 32.117 | 137 | 86 | 4 | 6 | 139 | 3 | 135 | 8.95e-18 | 77.8 |
MsaG038884 | MtrunA17_Chr2g0318101 | 31.469 | 143 | 89 | 5 | 2 | 140 | 7 | 144 | 9.40e-18 | 78.6 |
MsaG038884 | MtrunA17_Chr7g0214071 | 33.835 | 133 | 79 | 6 | 5 | 133 | 10 | 137 | 9.98e-18 | 77.4 |
MsaG038884 | MtrunA17_Chr2g0318081 | 30.496 | 141 | 89 | 5 | 6 | 143 | 12 | 146 | 1.13e-17 | 78.2 |
MsaG038884 | MtrunA17_Chr1g0147421 | 33.582 | 134 | 82 | 5 | 7 | 135 | 24 | 155 | 2.91e-17 | 77.0 |
MsaG038884 | MtrunA17_Chr8g0384721 | 31.343 | 134 | 85 | 4 | 8 | 138 | 5 | 134 | 3.73e-17 | 76.3 |
MsaG038884 | MtrunA17_Chr6g0481091 | 32.824 | 131 | 84 | 3 | 6 | 133 | 2 | 131 | 4.11e-17 | 75.5 |
MsaG038884 | MtrunA17_Chr2g0309891 | 31.298 | 131 | 86 | 3 | 6 | 133 | 2 | 131 | 5.24e-17 | 76.3 |
MsaG038884 | MtrunA17_Chr6g0453131 | 33.333 | 135 | 85 | 3 | 9 | 140 | 14 | 146 | 6.43e-17 | 76.3 |
MsaG038884 | MtrunA17_Chr6g0484441 | 32.308 | 130 | 82 | 4 | 7 | 133 | 2 | 128 | 1.64e-16 | 74.7 |
MsaG038884 | MtrunA17_Chr3g0144271 | 34.091 | 132 | 80 | 5 | 7 | 133 | 20 | 149 | 2.30e-16 | 75.1 |
MsaG038884 | MtrunA17_Chr5g0417791 | 33.083 | 133 | 82 | 6 | 8 | 136 | 1 | 130 | 2.42e-16 | 73.6 |
MsaG038884 | MtrunA17_Chr5g0417001 | 32.374 | 139 | 87 | 5 | 7 | 141 | 12 | 147 | 2.57e-16 | 74.7 |
MsaG038884 | MtrunA17_Chr7g0217711 | 32.857 | 140 | 88 | 5 | 3 | 139 | 12 | 148 | 2.78e-16 | 72.0 |
MsaG038884 | MtrunA17_Chr2g0316971 | 32.061 | 131 | 83 | 5 | 7 | 133 | 20 | 148 | 3.95e-16 | 73.9 |
MsaG038884 | MtrunA17_Chr6g0453451 | 31.579 | 133 | 85 | 4 | 4 | 133 | 14 | 143 | 5.87e-16 | 73.2 |
MsaG038884 | MtrunA17_Chr4g0017921 | 32.278 | 158 | 100 | 6 | 1 | 154 | 1 | 155 | 6.48e-16 | 73.2 |
MsaG038884 | MtrunA17_Chr5g0442771 | 34.848 | 132 | 78 | 5 | 7 | 133 | 16 | 144 | 6.93e-16 | 72.8 |
MsaG038884 | MtrunA17_Chr2g0311651 | 32.609 | 138 | 85 | 5 | 3 | 133 | 14 | 150 | 1.33e-15 | 72.0 |
MsaG038884 | MtrunA17_Chr2g0326361 | 31.429 | 140 | 87 | 5 | 10 | 145 | 14 | 148 | 1.81e-15 | 72.0 |
MsaG038884 | MtrunA17_Chr7g0263931 | 30.827 | 133 | 86 | 4 | 5 | 133 | 6 | 136 | 2.30e-15 | 71.6 |
MsaG038884 | MtrunA17_Chr2g0311661 | 33.333 | 138 | 84 | 5 | 2 | 133 | 14 | 149 | 3.13e-15 | 70.9 |
MsaG038884 | MtrunA17_Chr4g0060931 | 30.769 | 130 | 84 | 5 | 7 | 133 | 14 | 140 | 4.25e-15 | 71.2 |
MsaG038884 | MtrunA17_Chr2g0309331 | 30.657 | 137 | 91 | 3 | 1 | 133 | 1 | 137 | 7.20e-15 | 70.5 |
MsaG038884 | MtrunA17_Chr8g0361731 | 32.639 | 144 | 89 | 6 | 7 | 146 | 12 | 151 | 8.41e-15 | 70.5 |
MsaG038884 | MtrunA17_Chr8g0385991 | 28.148 | 135 | 89 | 4 | 3 | 133 | 7 | 137 | 1.84e-14 | 68.2 |
MsaG038884 | MtrunA17_Chr3g0130101 | 29.452 | 146 | 99 | 3 | 13 | 155 | 10 | 154 | 2.51e-14 | 68.9 |
MsaG038884 | MtrunA17_Chr1g0197351 | 30.709 | 127 | 84 | 3 | 10 | 133 | 42 | 167 | 2.62e-14 | 68.9 |
MsaG038884 | MtrunA17_Chr7g0217721 | 29.221 | 154 | 96 | 6 | 3 | 153 | 12 | 155 | 3.27e-14 | 68.6 |
MsaG038884 | MtrunA17_Chr1g0183741 | 29.927 | 137 | 90 | 4 | 1 | 133 | 1 | 135 | 4.08e-14 | 67.8 |
MsaG038884 | MtrunA17_Chr5g0428991 | 33.858 | 127 | 80 | 3 | 10 | 133 | 25 | 150 | 4.37e-14 | 68.6 |
MsaG038884 | MtrunA17_Chr1g0201021 | 30.159 | 126 | 84 | 3 | 13 | 135 | 22 | 146 | 9.91e-14 | 67.4 |
MsaG038884 | MtrunA17_Chr4g0018391 | 29.412 | 153 | 96 | 6 | 10 | 154 | 7 | 155 | 2.97e-13 | 65.9 |
MsaG038884 | MtrunA17_Chr4g0050701 | 34.127 | 126 | 73 | 5 | 10 | 133 | 11 | 128 | 6.83e-13 | 63.2 |
MsaG038884 | MtrunA17_Chr5g0405211 | 30.137 | 146 | 94 | 5 | 5 | 146 | 3 | 144 | 7.60e-13 | 64.7 |
MsaG038884 | MtrunA17_Chr7g0261411 | 30.657 | 137 | 89 | 4 | 1 | 133 | 1 | 135 | 1.01e-12 | 63.9 |
MsaG038884 | MtrunA17_Chr8g0345701 | 25.170 | 147 | 88 | 4 | 6 | 133 | 3 | 146 | 1.32e-12 | 62.0 |
MsaG038884 | MtrunA17_Chr8g0372121 | 30.534 | 131 | 86 | 4 | 7 | 133 | 3 | 132 | 3.14e-12 | 62.8 |
MsaG038884 | MtrunA17_Chr5g0398971 | 28.906 | 128 | 87 | 3 | 10 | 133 | 7 | 134 | 3.16e-12 | 62.8 |
MsaG038884 | MtrunA17_Chr2g0321631 | 30.822 | 146 | 92 | 4 | 9 | 146 | 3 | 147 | 5.23e-12 | 61.6 |
MsaG038884 | MtrunA17_Chr3g0128151 | 29.801 | 151 | 99 | 5 | 10 | 154 | 22 | 171 | 8.19e-12 | 62.0 |
MsaG038884 | MtrunA17_Chr1g0200561 | 28.571 | 133 | 90 | 4 | 5 | 133 | 14 | 145 | 9.82e-12 | 61.6 |
MsaG038884 | MtrunA17_Chr3g0092671 | 26.400 | 125 | 87 | 3 | 13 | 133 | 8 | 131 | 1.67e-11 | 61.2 |
MsaG038884 | MtrunA17_Chr1g0197361 | 29.104 | 134 | 87 | 5 | 13 | 142 | 11 | 140 | 1.68e-11 | 61.2 |
MsaG038884 | MtrunA17_Chr4g0076731 | 29.231 | 130 | 86 | 4 | 7 | 133 | 52 | 178 | 1.77e-11 | 60.8 |
MsaG038884 | MtrunA17_Chr3g0131911 | 27.737 | 137 | 89 | 4 | 3 | 133 | 7 | 139 | 7.68e-11 | 58.5 |
MsaG038884 | MtrunA17_Chr8g0384201 | 26.846 | 149 | 105 | 4 | 10 | 155 | 6 | 153 | 9.94e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG038884 | AT5G18270.1 | 36.434 | 129 | 77 | 4 | 8 | 133 | 19 | 145 | 6.65e-21 | 87.4 |
MsaG038884 | AT5G18270.2 | 35.659 | 129 | 78 | 4 | 8 | 133 | 19 | 145 | 1.05e-20 | 86.7 |
MsaG038884 | AT5G13180.1 | 35.556 | 135 | 78 | 5 | 3 | 133 | 7 | 136 | 8.69e-20 | 83.2 |
MsaG038884 | AT5G04410.1 | 33.117 | 154 | 90 | 6 | 10 | 154 | 9 | 158 | 9.50e-20 | 85.1 |
MsaG038884 | AT1G76420.1 | 35.115 | 131 | 79 | 5 | 7 | 133 | 19 | 147 | 2.83e-19 | 82.8 |
MsaG038884 | AT1G61110.1 | 31.690 | 142 | 89 | 4 | 2 | 140 | 8 | 144 | 3.06e-19 | 82.8 |
MsaG038884 | AT5G63790.1 | 33.088 | 136 | 84 | 4 | 6 | 138 | 46 | 177 | 3.21e-19 | 82.4 |
MsaG038884 | AT1G77450.1 | 31.507 | 146 | 93 | 4 | 1 | 143 | 1 | 142 | 3.32e-19 | 81.6 |
MsaG038884 | AT5G63790.2 | 33.088 | 136 | 84 | 4 | 6 | 138 | 56 | 187 | 3.39e-19 | 82.4 |
MsaG038884 | AT5G08790.1 | 32.353 | 136 | 85 | 4 | 6 | 138 | 3 | 134 | 5.58e-19 | 81.3 |
MsaG038884 | AT3G04070.2 | 30.667 | 150 | 95 | 4 | 1 | 143 | 1 | 148 | 1.13e-18 | 81.3 |
MsaG038884 | AT3G10500.1 | 33.071 | 127 | 81 | 3 | 10 | 133 | 9 | 134 | 1.21e-18 | 82.0 |
MsaG038884 | AT3G04070.1 | 30.667 | 150 | 95 | 4 | 1 | 143 | 1 | 148 | 1.86e-18 | 80.9 |
MsaG038884 | AT2G24430.2 | 34.351 | 131 | 80 | 5 | 7 | 133 | 13 | 141 | 2.21e-18 | 80.1 |
MsaG038884 | AT2G24430.1 | 34.351 | 131 | 80 | 5 | 7 | 133 | 13 | 141 | 2.21e-18 | 80.1 |
MsaG038884 | AT1G65910.1 | 30.323 | 155 | 101 | 4 | 6 | 154 | 2 | 155 | 5.02e-18 | 80.1 |
MsaG038884 | AT3G15500.1 | 31.206 | 141 | 88 | 5 | 6 | 143 | 10 | 144 | 7.26e-18 | 79.0 |
MsaG038884 | AT5G53950.1 | 33.594 | 128 | 79 | 5 | 10 | 133 | 17 | 142 | 8.91e-18 | 79.0 |
MsaG038884 | AT3G17730.1 | 32.911 | 158 | 93 | 5 | 6 | 154 | 2 | 155 | 9.69e-18 | 77.4 |
MsaG038884 | AT3G03200.1 | 32.877 | 146 | 90 | 4 | 6 | 148 | 2 | 142 | 1.56e-17 | 79.0 |
MsaG038884 | AT5G17260.1 | 32.824 | 131 | 84 | 3 | 6 | 133 | 2 | 131 | 1.92e-17 | 78.6 |
MsaG038884 | AT1G01720.1 | 32.090 | 134 | 84 | 4 | 8 | 138 | 5 | 134 | 2.30e-17 | 77.0 |
MsaG038884 | AT3G10480.2 | 31.646 | 158 | 102 | 5 | 2 | 155 | 19 | 174 | 2.67e-17 | 78.2 |
MsaG038884 | AT1G52890.1 | 31.915 | 141 | 87 | 5 | 6 | 143 | 10 | 144 | 2.71e-17 | 77.4 |
MsaG038884 | AT3G04060.1 | 32.558 | 129 | 82 | 4 | 8 | 133 | 18 | 144 | 4.98e-17 | 76.6 |
MsaG038884 | AT3G29035.1 | 33.077 | 130 | 81 | 5 | 7 | 133 | 21 | 147 | 6.08e-17 | 76.3 |
MsaG038884 | AT5G39610.1 | 31.618 | 136 | 87 | 5 | 1 | 133 | 11 | 143 | 7.29e-17 | 75.9 |
MsaG038884 | AT1G69490.1 | 31.724 | 145 | 90 | 6 | 4 | 145 | 3 | 141 | 9.31e-17 | 75.1 |
MsaG038884 | AT1G54330.1 | 30.519 | 154 | 99 | 4 | 6 | 154 | 2 | 152 | 1.19e-16 | 75.5 |
MsaG038884 | AT4G27410.2 | 30.534 | 131 | 85 | 4 | 6 | 133 | 10 | 137 | 2.10e-16 | 74.7 |
MsaG038884 | AT5G61430.1 | 32.308 | 130 | 82 | 5 | 7 | 133 | 13 | 139 | 2.37e-16 | 74.7 |
MsaG038884 | AT3G12910.1 | 32.886 | 149 | 89 | 5 | 8 | 149 | 20 | 164 | 2.41e-16 | 74.3 |
MsaG038884 | AT5G07680.1 | 31.655 | 139 | 88 | 6 | 5 | 139 | 12 | 147 | 2.47e-16 | 74.7 |
MsaG038884 | AT5G39820.1 | 30.769 | 143 | 92 | 5 | 7 | 145 | 18 | 157 | 2.74e-16 | 74.7 |
MsaG038884 | AT3G15170.1 | 32.061 | 131 | 83 | 5 | 7 | 133 | 17 | 145 | 2.75e-16 | 74.3 |
MsaG038884 | AT5G07680.2 | 32.353 | 136 | 85 | 6 | 8 | 139 | 1 | 133 | 4.28e-16 | 73.9 |
MsaG038884 | AT2G33480.1 | 32.812 | 128 | 75 | 5 | 10 | 133 | 15 | 135 | 5.27e-16 | 73.2 |
MsaG038884 | AT2G43000.1 | 33.846 | 130 | 79 | 5 | 7 | 133 | 16 | 141 | 5.53e-16 | 73.2 |
MsaG038884 | AT2G33480.2 | 32.812 | 128 | 75 | 5 | 10 | 133 | 15 | 135 | 6.01e-16 | 73.2 |
MsaG038884 | AT2G27300.1 | 35.714 | 126 | 76 | 5 | 13 | 135 | 17 | 140 | 7.66e-16 | 73.6 |
MsaG038884 | AT3G15510.1 | 32.258 | 124 | 78 | 4 | 14 | 133 | 21 | 142 | 8.66e-16 | 73.6 |
MsaG038884 | AT3G10480.1 | 31.447 | 159 | 102 | 6 | 2 | 155 | 19 | 175 | 9.50e-16 | 73.6 |
MsaG038884 | AT3G10490.1 | 33.088 | 136 | 85 | 5 | 2 | 133 | 19 | 152 | 9.58e-16 | 72.0 |
MsaG038884 | AT4G17980.1 | 28.369 | 141 | 97 | 3 | 10 | 146 | 6 | 146 | 1.37e-15 | 72.0 |
MsaG038884 | AT4G17980.2 | 28.369 | 141 | 97 | 3 | 10 | 146 | 6 | 146 | 2.94e-15 | 71.2 |
MsaG038884 | AT1G26870.1 | 32.576 | 132 | 80 | 6 | 7 | 133 | 14 | 141 | 6.27e-15 | 71.2 |
MsaG038884 | AT3G10490.2 | 33.088 | 136 | 85 | 5 | 2 | 133 | 19 | 152 | 1.34e-14 | 70.5 |
MsaG038884 | AT1G34190.1 | 30.000 | 150 | 94 | 5 | 13 | 154 | 19 | 165 | 1.67e-14 | 70.1 |
MsaG038884 | AT1G33280.1 | 31.013 | 158 | 102 | 5 | 1 | 154 | 1 | 155 | 2.64e-14 | 68.9 |
MsaG038884 | AT4G27410.3 | 27.397 | 146 | 87 | 4 | 6 | 133 | 10 | 154 | 3.19e-14 | 68.9 |
MsaG038884 | AT4G36160.2 | 29.927 | 137 | 91 | 4 | 1 | 133 | 5 | 140 | 6.88e-14 | 68.2 |
MsaG038884 | AT1G33060.2 | 31.496 | 127 | 83 | 3 | 10 | 133 | 24 | 149 | 7.28e-14 | 68.2 |
MsaG038884 | AT4G36160.1 | 29.927 | 137 | 91 | 4 | 1 | 133 | 1 | 136 | 7.37e-14 | 68.2 |
MsaG038884 | AT4G36160.3 | 29.927 | 137 | 91 | 4 | 1 | 133 | 1 | 136 | 7.37e-14 | 68.2 |
MsaG038884 | AT1G33060.1 | 31.496 | 127 | 83 | 3 | 10 | 133 | 24 | 149 | 7.93e-14 | 68.2 |
MsaG038884 | AT1G34180.1 | 30.159 | 126 | 84 | 3 | 13 | 135 | 19 | 143 | 1.34e-13 | 67.4 |
MsaG038884 | AT4G10350.1 | 32.353 | 136 | 87 | 4 | 10 | 141 | 9 | 143 | 1.37e-13 | 67.0 |
MsaG038884 | AT1G79580.3 | 25.478 | 157 | 113 | 3 | 2 | 154 | 9 | 165 | 1.42e-13 | 67.4 |
MsaG038884 | AT1G79580.5 | 25.478 | 157 | 113 | 3 | 2 | 154 | 9 | 165 | 1.42e-13 | 67.4 |
MsaG038884 | AT1G79580.4 | 25.478 | 157 | 113 | 3 | 2 | 154 | 9 | 165 | 1.42e-13 | 67.4 |
MsaG038884 | AT1G79580.2 | 25.478 | 157 | 113 | 3 | 2 | 154 | 9 | 165 | 1.42e-13 | 67.4 |
MsaG038884 | AT1G79580.1 | 25.478 | 157 | 113 | 3 | 2 | 154 | 9 | 165 | 1.42e-13 | 67.4 |
MsaG038884 | AT1G34180.3 | 30.159 | 126 | 84 | 3 | 13 | 135 | 19 | 143 | 2.29e-13 | 66.6 |
MsaG038884 | AT5G46590.1 | 27.338 | 139 | 97 | 3 | 10 | 145 | 6 | 143 | 3.67e-13 | 65.5 |
MsaG038884 | AT5G66300.1 | 31.538 | 130 | 84 | 4 | 8 | 133 | 10 | 138 | 3.81e-13 | 65.5 |
MsaG038884 | AT5G46590.2 | 27.338 | 139 | 97 | 3 | 10 | 145 | 6 | 143 | 4.22e-13 | 65.5 |
MsaG038884 | AT4G35580.1 | 32.283 | 127 | 82 | 3 | 10 | 133 | 9 | 134 | 4.63e-13 | 65.9 |
MsaG038884 | AT5G14000.2 | 25.899 | 139 | 93 | 5 | 3 | 136 | 8 | 141 | 5.10e-13 | 63.2 |
MsaG038884 | AT5G14000.1 | 24.204 | 157 | 109 | 5 | 3 | 154 | 8 | 159 | 7.33e-13 | 63.9 |
MsaG038884 | AT4G35580.3 | 32.283 | 127 | 82 | 3 | 10 | 133 | 9 | 134 | 7.56e-13 | 65.5 |
MsaG038884 | AT4G35580.2 | 32.283 | 127 | 82 | 3 | 10 | 133 | 9 | 134 | 7.63e-13 | 65.5 |
MsaG038884 | AT2G18060.3 | 30.000 | 130 | 86 | 4 | 8 | 133 | 7 | 135 | 1.65e-12 | 64.3 |
MsaG038884 | AT2G18060.1 | 30.000 | 130 | 86 | 4 | 8 | 133 | 7 | 135 | 1.65e-12 | 64.3 |
MsaG038884 | AT5G24590.2 | 29.139 | 151 | 101 | 4 | 10 | 154 | 13 | 163 | 1.69e-12 | 64.3 |
MsaG038884 | AT5G64060.1 | 28.244 | 131 | 90 | 3 | 6 | 133 | 2 | 131 | 4.80e-12 | 62.8 |
MsaG038884 | AT5G04395.1 | 29.221 | 154 | 91 | 6 | 1 | 137 | 19 | 171 | 5.06e-12 | 61.2 |
MsaG038884 | AT1G71930.2 | 29.008 | 131 | 88 | 4 | 7 | 133 | 6 | 135 | 5.40e-12 | 62.4 |
MsaG038884 | AT1G71930.1 | 29.008 | 131 | 88 | 4 | 7 | 133 | 6 | 135 | 5.40e-12 | 62.4 |
MsaG038884 | AT1G32870.2 | 29.457 | 129 | 89 | 2 | 10 | 137 | 10 | 137 | 6.31e-12 | 62.8 |
MsaG038884 | AT1G32870.1 | 29.457 | 129 | 89 | 2 | 10 | 137 | 10 | 137 | 6.51e-12 | 62.8 |
MsaG038884 | AT1G32870.3 | 29.457 | 129 | 89 | 2 | 10 | 137 | 46 | 173 | 7.19e-12 | 62.4 |
MsaG038884 | AT5G64530.2 | 30.000 | 130 | 77 | 5 | 8 | 135 | 1 | 118 | 8.80e-12 | 60.1 |
MsaG038884 | AT1G56010.2 | 27.941 | 136 | 91 | 4 | 2 | 133 | 11 | 143 | 1.41e-11 | 61.2 |
MsaG038884 | AT5G64530.1 | 30.000 | 130 | 77 | 5 | 8 | 135 | 1 | 118 | 2.85e-11 | 59.3 |
MsaG038884 | AT3G44290.2 | 27.692 | 130 | 89 | 4 | 13 | 139 | 17 | 144 | 5.67e-11 | 58.9 |
MsaG038884 | AT5G09330.5 | 30.534 | 131 | 87 | 4 | 6 | 133 | 2 | 131 | 6.80e-11 | 59.7 |
MsaG038884 | AT5G09330.2 | 30.534 | 131 | 87 | 4 | 6 | 133 | 2 | 131 | 6.80e-11 | 59.7 |
MsaG038884 | AT5G09330.4 | 30.534 | 131 | 87 | 4 | 6 | 133 | 2 | 131 | 6.80e-11 | 59.7 |
MsaG038884 | AT5G09330.3 | 30.534 | 131 | 87 | 4 | 6 | 133 | 2 | 131 | 6.80e-11 | 59.7 |
MsaG038884 | AT5G09330.1 | 30.534 | 131 | 87 | 4 | 6 | 133 | 2 | 131 | 6.80e-11 | 59.7 |
MsaG038884 | AT5G50820.1 | 29.630 | 135 | 85 | 3 | 2 | 133 | 9 | 136 | 8.40e-11 | 58.2 |
Find 39 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGATCTACCTGCTGGATTC+AGG | 0.237662 | 7:-81964152 | MsaT038884.1:CDS |
TGCAGAAAATAGATACTCTT+TGG | 0.273533 | 7:-81963722 | MsaT038884.1:intron |
GAACCGTAGGTTCGAGAATA+TGG | 0.296257 | 7:-81963668 | MsaT038884.1:CDS |
TCAAATTCTGACATGACATT+TGG | 0.343033 | 7:+81964063 | None:intergenic |
ATTGTATTCCTTACCCTAGT+TGG | 0.360957 | 7:+81963466 | None:intergenic |
GAAAGAACAGATATGTTTAC+TGG | 0.378161 | 7:-81963561 | MsaT038884.1:CDS |
ATAGATACTCTTTGGAGAAT+AGG | 0.394512 | 7:-81963714 | MsaT038884.1:CDS |
AGTACTATTTCTTTGATCTC+AGG | 0.411387 | 7:-81963690 | MsaT038884.1:CDS |
AAGATCCGATAGGCAGCTAT+AGG | 0.467878 | 7:+81963295 | None:intergenic |
ACAGATATGTTTACTGGATA+GGG | 0.475339 | 7:-81963555 | MsaT038884.1:CDS |
TCTGACATGACATTTGGAAA+AGG | 0.488494 | 7:+81964069 | None:intergenic |
ACTGAGCCATGGAGGCTGCC+AGG | 0.492712 | 7:-81964030 | MsaT038884.1:CDS |
AACAGATATGTTTACTGGAT+AGG | 0.498598 | 7:-81963556 | MsaT038884.1:CDS |
TCAACAAGTACGCGATCGGT+TGG | 0.506848 | 7:+81964123 | None:intergenic |
AAACCTCCTGGCAGCCTCCA+TGG | 0.506870 | 7:+81964024 | None:intergenic |
ATCGGATCTTTAAGATATGA+AGG | 0.521757 | 7:-81963282 | None:intergenic |
GCTGAGGTTGATCTACCTGC+TGG | 0.528162 | 7:-81964159 | MsaT038884.1:CDS |
AATATGGATGCAAGAAGAGC+TGG | 0.531324 | 7:-81963652 | MsaT038884.1:CDS |
ATATATTTCAAACTGAGCCA+TGG | 0.550284 | 7:-81964041 | MsaT038884.1:CDS |
ACATGACATTTGGAAAAGGT+TGG | 0.561346 | 7:+81964073 | None:intergenic |
CATCCATATTCTCGAACCTA+CGG | 0.563017 | 7:+81963665 | None:intergenic |
GTAGAATTTCTGATCCAACT+AGG | 0.564430 | 7:-81963480 | MsaT038884.1:CDS |
GATGCAAGAAGAGCTGGAAA+TGG | 0.566075 | 7:-81963646 | MsaT038884.1:CDS |
ATCAAGCTCTGATGACAAGA+TGG | 0.571832 | 7:-81963525 | MsaT038884.1:CDS |
TCTTTGATCTCAGGAACCGT+AGG | 0.573721 | 7:-81963681 | MsaT038884.1:CDS |
GAAGAGCTGGAAATGGTGAA+TGG | 0.577138 | 7:-81963639 | MsaT038884.1:CDS |
GGATCAAACCTGAATCCAGC+AGG | 0.578674 | 7:+81964144 | None:intergenic |
TAGAATTTCTGATCCAACTA+GGG | 0.584601 | 7:-81963479 | MsaT038884.1:intron |
GCGAATAGTTCAAAGGAATG+AGG | 0.587265 | 7:-81963617 | MsaT038884.1:CDS |
TATGTTTACTGGATAGGGCA+AGG | 0.598697 | 7:-81963550 | MsaT038884.1:CDS |
GTGAATGGCGAATAGTTCAA+AGG | 0.604587 | 7:-81963624 | MsaT038884.1:CDS |
GGTCACCTATAGCTGCCTAT+CGG | 0.611918 | 7:-81963300 | MsaT038884.1:CDS |
GCACTCAACAAGTACGCGAT+CGG | 0.627245 | 7:+81964119 | None:intergenic |
TCATATCTTAAAGATCCGAT+AGG | 0.653307 | 7:+81963285 | None:intergenic |
AAGCTCTGATGACAAGATGG+TGG | 0.668891 | 7:-81963522 | MsaT038884.1:CDS |
TATTTCAAACTGAGCCATGG+AGG | 0.675314 | 7:-81964038 | MsaT038884.1:CDS |
CATGGCTGTAGCTAATGCTG+AGG | 0.680042 | 7:-81964175 | MsaT038884.1:CDS |
GAGCCATGGAGGCTGCCAGG+AGG | 0.693460 | 7:-81964027 | MsaT038884.1:intron |
TGGATGCATGAATTTGTCAT+CGG | 0.708626 | 7:-81963502 | MsaT038884.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 81963285 | 81964196 | 81963285 | ID=MsaG038884 |
Chr7 | mRNA | 81963285 | 81964196 | 81963285 | ID=MsaT038884.1;Parent=MsaG038884 |
Chr7 | exon | 81963285 | 81963323 | 81963285 | ID=MsaT038884.1.exon3;Parent=MsaT038884.1 |
Chr7 | CDS | 81963285 | 81963323 | 81963285 | ID=cds.MsaT038884.1;Parent=MsaT038884.1 |
Chr7 | exon | 81963480 | 81963739 | 81963480 | ID=MsaT038884.1.exon2;Parent=MsaT038884.1 |
Chr7 | CDS | 81963480 | 81963739 | 81963480 | ID=cds.MsaT038884.1;Parent=MsaT038884.1 |
Chr7 | exon | 81964028 | 81964196 | 81964028 | ID=MsaT038884.1.exon1;Parent=MsaT038884.1 |
Chr7 | CDS | 81964028 | 81964196 | 81964028 | ID=cds.MsaT038884.1;Parent=MsaT038884.1 |
Gene Sequence |
Protein sequence |