AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG038884


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG038884 MtrunA17_Chr7g0251661 90.909 143 13 0 1 143 1 143 1.63e-96 275
MsaG038884 MtrunA17_Chr7g0251671 79.021 143 30 0 1 143 1 143 8.39e-81 236
MsaG038884 MtrunA17_Chr7g0251651 66.883 154 50 1 3 155 11 164 1.35e-70 211
MsaG038884 MtrunA17_Chr3g0124761 33.824 136 83 4 6 138 3 134 7.64e-21 86.3
MsaG038884 MtrunA17_Chr3g0139331 33.835 133 82 5 7 135 8 138 5.13e-20 84.7
MsaG038884 MtrunA17_Chr7g0252971 31.690 142 84 4 3 133 1 140 6.13e-19 81.6
MsaG038884 MtrunA17_Chr7g0253011 34.091 132 79 5 8 133 15 144 8.33e-19 81.6
MsaG038884 MtrunA17_Chr8g0359921 29.333 150 97 5 6 152 10 153 1.01e-18 80.9
MsaG038884 MtrunA17_Chr4g0042561 32.117 137 86 5 4 136 3 136 1.26e-18 79.7
MsaG038884 MtrunA17_Chr5g0433781 31.373 153 101 3 6 155 2 153 2.08e-18 80.9
MsaG038884 MtrunA17_Chr3g0109821 32.051 156 98 5 6 154 2 156 4.77e-18 80.1
MsaG038884 MtrunA17_Chr4g0047841 34.375 128 78 4 10 133 15 140 4.95e-18 79.3
MsaG038884 MtrunA17_Chr6g0461661 32.624 141 88 5 4 139 12 150 5.45e-18 79.3
MsaG038884 MtrunA17_Chr3g0130731 32.117 137 86 4 6 139 3 135 8.95e-18 77.8
MsaG038884 MtrunA17_Chr2g0318101 31.469 143 89 5 2 140 7 144 9.40e-18 78.6
MsaG038884 MtrunA17_Chr7g0214071 33.835 133 79 6 5 133 10 137 9.98e-18 77.4
MsaG038884 MtrunA17_Chr2g0318081 30.496 141 89 5 6 143 12 146 1.13e-17 78.2
MsaG038884 MtrunA17_Chr1g0147421 33.582 134 82 5 7 135 24 155 2.91e-17 77.0
MsaG038884 MtrunA17_Chr8g0384721 31.343 134 85 4 8 138 5 134 3.73e-17 76.3
MsaG038884 MtrunA17_Chr6g0481091 32.824 131 84 3 6 133 2 131 4.11e-17 75.5
MsaG038884 MtrunA17_Chr2g0309891 31.298 131 86 3 6 133 2 131 5.24e-17 76.3
MsaG038884 MtrunA17_Chr6g0453131 33.333 135 85 3 9 140 14 146 6.43e-17 76.3
MsaG038884 MtrunA17_Chr6g0484441 32.308 130 82 4 7 133 2 128 1.64e-16 74.7
MsaG038884 MtrunA17_Chr3g0144271 34.091 132 80 5 7 133 20 149 2.30e-16 75.1
MsaG038884 MtrunA17_Chr5g0417791 33.083 133 82 6 8 136 1 130 2.42e-16 73.6
MsaG038884 MtrunA17_Chr5g0417001 32.374 139 87 5 7 141 12 147 2.57e-16 74.7
MsaG038884 MtrunA17_Chr7g0217711 32.857 140 88 5 3 139 12 148 2.78e-16 72.0
MsaG038884 MtrunA17_Chr2g0316971 32.061 131 83 5 7 133 20 148 3.95e-16 73.9
MsaG038884 MtrunA17_Chr6g0453451 31.579 133 85 4 4 133 14 143 5.87e-16 73.2
MsaG038884 MtrunA17_Chr4g0017921 32.278 158 100 6 1 154 1 155 6.48e-16 73.2
MsaG038884 MtrunA17_Chr5g0442771 34.848 132 78 5 7 133 16 144 6.93e-16 72.8
MsaG038884 MtrunA17_Chr2g0311651 32.609 138 85 5 3 133 14 150 1.33e-15 72.0
MsaG038884 MtrunA17_Chr2g0326361 31.429 140 87 5 10 145 14 148 1.81e-15 72.0
MsaG038884 MtrunA17_Chr7g0263931 30.827 133 86 4 5 133 6 136 2.30e-15 71.6
MsaG038884 MtrunA17_Chr2g0311661 33.333 138 84 5 2 133 14 149 3.13e-15 70.9
MsaG038884 MtrunA17_Chr4g0060931 30.769 130 84 5 7 133 14 140 4.25e-15 71.2
MsaG038884 MtrunA17_Chr2g0309331 30.657 137 91 3 1 133 1 137 7.20e-15 70.5
MsaG038884 MtrunA17_Chr8g0361731 32.639 144 89 6 7 146 12 151 8.41e-15 70.5
MsaG038884 MtrunA17_Chr8g0385991 28.148 135 89 4 3 133 7 137 1.84e-14 68.2
MsaG038884 MtrunA17_Chr3g0130101 29.452 146 99 3 13 155 10 154 2.51e-14 68.9
MsaG038884 MtrunA17_Chr1g0197351 30.709 127 84 3 10 133 42 167 2.62e-14 68.9
MsaG038884 MtrunA17_Chr7g0217721 29.221 154 96 6 3 153 12 155 3.27e-14 68.6
MsaG038884 MtrunA17_Chr1g0183741 29.927 137 90 4 1 133 1 135 4.08e-14 67.8
MsaG038884 MtrunA17_Chr5g0428991 33.858 127 80 3 10 133 25 150 4.37e-14 68.6
MsaG038884 MtrunA17_Chr1g0201021 30.159 126 84 3 13 135 22 146 9.91e-14 67.4
MsaG038884 MtrunA17_Chr4g0018391 29.412 153 96 6 10 154 7 155 2.97e-13 65.9
MsaG038884 MtrunA17_Chr4g0050701 34.127 126 73 5 10 133 11 128 6.83e-13 63.2
MsaG038884 MtrunA17_Chr5g0405211 30.137 146 94 5 5 146 3 144 7.60e-13 64.7
MsaG038884 MtrunA17_Chr7g0261411 30.657 137 89 4 1 133 1 135 1.01e-12 63.9
MsaG038884 MtrunA17_Chr8g0345701 25.170 147 88 4 6 133 3 146 1.32e-12 62.0
MsaG038884 MtrunA17_Chr8g0372121 30.534 131 86 4 7 133 3 132 3.14e-12 62.8
MsaG038884 MtrunA17_Chr5g0398971 28.906 128 87 3 10 133 7 134 3.16e-12 62.8
MsaG038884 MtrunA17_Chr2g0321631 30.822 146 92 4 9 146 3 147 5.23e-12 61.6
MsaG038884 MtrunA17_Chr3g0128151 29.801 151 99 5 10 154 22 171 8.19e-12 62.0
MsaG038884 MtrunA17_Chr1g0200561 28.571 133 90 4 5 133 14 145 9.82e-12 61.6
MsaG038884 MtrunA17_Chr3g0092671 26.400 125 87 3 13 133 8 131 1.67e-11 61.2
MsaG038884 MtrunA17_Chr1g0197361 29.104 134 87 5 13 142 11 140 1.68e-11 61.2
MsaG038884 MtrunA17_Chr4g0076731 29.231 130 86 4 7 133 52 178 1.77e-11 60.8
MsaG038884 MtrunA17_Chr3g0131911 27.737 137 89 4 3 133 7 139 7.68e-11 58.5
MsaG038884 MtrunA17_Chr8g0384201 26.846 149 105 4 10 155 6 153 9.94e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG038884 AT5G18270.1 36.434 129 77 4 8 133 19 145 6.65e-21 87.4
MsaG038884 AT5G18270.2 35.659 129 78 4 8 133 19 145 1.05e-20 86.7
MsaG038884 AT5G13180.1 35.556 135 78 5 3 133 7 136 8.69e-20 83.2
MsaG038884 AT5G04410.1 33.117 154 90 6 10 154 9 158 9.50e-20 85.1
MsaG038884 AT1G76420.1 35.115 131 79 5 7 133 19 147 2.83e-19 82.8
MsaG038884 AT1G61110.1 31.690 142 89 4 2 140 8 144 3.06e-19 82.8
MsaG038884 AT5G63790.1 33.088 136 84 4 6 138 46 177 3.21e-19 82.4
MsaG038884 AT1G77450.1 31.507 146 93 4 1 143 1 142 3.32e-19 81.6
MsaG038884 AT5G63790.2 33.088 136 84 4 6 138 56 187 3.39e-19 82.4
MsaG038884 AT5G08790.1 32.353 136 85 4 6 138 3 134 5.58e-19 81.3
MsaG038884 AT3G04070.2 30.667 150 95 4 1 143 1 148 1.13e-18 81.3
MsaG038884 AT3G10500.1 33.071 127 81 3 10 133 9 134 1.21e-18 82.0
MsaG038884 AT3G04070.1 30.667 150 95 4 1 143 1 148 1.86e-18 80.9
MsaG038884 AT2G24430.2 34.351 131 80 5 7 133 13 141 2.21e-18 80.1
MsaG038884 AT2G24430.1 34.351 131 80 5 7 133 13 141 2.21e-18 80.1
MsaG038884 AT1G65910.1 30.323 155 101 4 6 154 2 155 5.02e-18 80.1
MsaG038884 AT3G15500.1 31.206 141 88 5 6 143 10 144 7.26e-18 79.0
MsaG038884 AT5G53950.1 33.594 128 79 5 10 133 17 142 8.91e-18 79.0
MsaG038884 AT3G17730.1 32.911 158 93 5 6 154 2 155 9.69e-18 77.4
MsaG038884 AT3G03200.1 32.877 146 90 4 6 148 2 142 1.56e-17 79.0
MsaG038884 AT5G17260.1 32.824 131 84 3 6 133 2 131 1.92e-17 78.6
MsaG038884 AT1G01720.1 32.090 134 84 4 8 138 5 134 2.30e-17 77.0
MsaG038884 AT3G10480.2 31.646 158 102 5 2 155 19 174 2.67e-17 78.2
MsaG038884 AT1G52890.1 31.915 141 87 5 6 143 10 144 2.71e-17 77.4
MsaG038884 AT3G04060.1 32.558 129 82 4 8 133 18 144 4.98e-17 76.6
MsaG038884 AT3G29035.1 33.077 130 81 5 7 133 21 147 6.08e-17 76.3
MsaG038884 AT5G39610.1 31.618 136 87 5 1 133 11 143 7.29e-17 75.9
MsaG038884 AT1G69490.1 31.724 145 90 6 4 145 3 141 9.31e-17 75.1
MsaG038884 AT1G54330.1 30.519 154 99 4 6 154 2 152 1.19e-16 75.5
MsaG038884 AT4G27410.2 30.534 131 85 4 6 133 10 137 2.10e-16 74.7
MsaG038884 AT5G61430.1 32.308 130 82 5 7 133 13 139 2.37e-16 74.7
MsaG038884 AT3G12910.1 32.886 149 89 5 8 149 20 164 2.41e-16 74.3
MsaG038884 AT5G07680.1 31.655 139 88 6 5 139 12 147 2.47e-16 74.7
MsaG038884 AT5G39820.1 30.769 143 92 5 7 145 18 157 2.74e-16 74.7
MsaG038884 AT3G15170.1 32.061 131 83 5 7 133 17 145 2.75e-16 74.3
MsaG038884 AT5G07680.2 32.353 136 85 6 8 139 1 133 4.28e-16 73.9
MsaG038884 AT2G33480.1 32.812 128 75 5 10 133 15 135 5.27e-16 73.2
MsaG038884 AT2G43000.1 33.846 130 79 5 7 133 16 141 5.53e-16 73.2
MsaG038884 AT2G33480.2 32.812 128 75 5 10 133 15 135 6.01e-16 73.2
MsaG038884 AT2G27300.1 35.714 126 76 5 13 135 17 140 7.66e-16 73.6
MsaG038884 AT3G15510.1 32.258 124 78 4 14 133 21 142 8.66e-16 73.6
MsaG038884 AT3G10480.1 31.447 159 102 6 2 155 19 175 9.50e-16 73.6
MsaG038884 AT3G10490.1 33.088 136 85 5 2 133 19 152 9.58e-16 72.0
MsaG038884 AT4G17980.1 28.369 141 97 3 10 146 6 146 1.37e-15 72.0
MsaG038884 AT4G17980.2 28.369 141 97 3 10 146 6 146 2.94e-15 71.2
MsaG038884 AT1G26870.1 32.576 132 80 6 7 133 14 141 6.27e-15 71.2
MsaG038884 AT3G10490.2 33.088 136 85 5 2 133 19 152 1.34e-14 70.5
MsaG038884 AT1G34190.1 30.000 150 94 5 13 154 19 165 1.67e-14 70.1
MsaG038884 AT1G33280.1 31.013 158 102 5 1 154 1 155 2.64e-14 68.9
MsaG038884 AT4G27410.3 27.397 146 87 4 6 133 10 154 3.19e-14 68.9
MsaG038884 AT4G36160.2 29.927 137 91 4 1 133 5 140 6.88e-14 68.2
MsaG038884 AT1G33060.2 31.496 127 83 3 10 133 24 149 7.28e-14 68.2
MsaG038884 AT4G36160.1 29.927 137 91 4 1 133 1 136 7.37e-14 68.2
MsaG038884 AT4G36160.3 29.927 137 91 4 1 133 1 136 7.37e-14 68.2
MsaG038884 AT1G33060.1 31.496 127 83 3 10 133 24 149 7.93e-14 68.2
MsaG038884 AT1G34180.1 30.159 126 84 3 13 135 19 143 1.34e-13 67.4
MsaG038884 AT4G10350.1 32.353 136 87 4 10 141 9 143 1.37e-13 67.0
MsaG038884 AT1G79580.3 25.478 157 113 3 2 154 9 165 1.42e-13 67.4
MsaG038884 AT1G79580.5 25.478 157 113 3 2 154 9 165 1.42e-13 67.4
MsaG038884 AT1G79580.4 25.478 157 113 3 2 154 9 165 1.42e-13 67.4
MsaG038884 AT1G79580.2 25.478 157 113 3 2 154 9 165 1.42e-13 67.4
MsaG038884 AT1G79580.1 25.478 157 113 3 2 154 9 165 1.42e-13 67.4
MsaG038884 AT1G34180.3 30.159 126 84 3 13 135 19 143 2.29e-13 66.6
MsaG038884 AT5G46590.1 27.338 139 97 3 10 145 6 143 3.67e-13 65.5
MsaG038884 AT5G66300.1 31.538 130 84 4 8 133 10 138 3.81e-13 65.5
MsaG038884 AT5G46590.2 27.338 139 97 3 10 145 6 143 4.22e-13 65.5
MsaG038884 AT4G35580.1 32.283 127 82 3 10 133 9 134 4.63e-13 65.9
MsaG038884 AT5G14000.2 25.899 139 93 5 3 136 8 141 5.10e-13 63.2
MsaG038884 AT5G14000.1 24.204 157 109 5 3 154 8 159 7.33e-13 63.9
MsaG038884 AT4G35580.3 32.283 127 82 3 10 133 9 134 7.56e-13 65.5
MsaG038884 AT4G35580.2 32.283 127 82 3 10 133 9 134 7.63e-13 65.5
MsaG038884 AT2G18060.3 30.000 130 86 4 8 133 7 135 1.65e-12 64.3
MsaG038884 AT2G18060.1 30.000 130 86 4 8 133 7 135 1.65e-12 64.3
MsaG038884 AT5G24590.2 29.139 151 101 4 10 154 13 163 1.69e-12 64.3
MsaG038884 AT5G64060.1 28.244 131 90 3 6 133 2 131 4.80e-12 62.8
MsaG038884 AT5G04395.1 29.221 154 91 6 1 137 19 171 5.06e-12 61.2
MsaG038884 AT1G71930.2 29.008 131 88 4 7 133 6 135 5.40e-12 62.4
MsaG038884 AT1G71930.1 29.008 131 88 4 7 133 6 135 5.40e-12 62.4
MsaG038884 AT1G32870.2 29.457 129 89 2 10 137 10 137 6.31e-12 62.8
MsaG038884 AT1G32870.1 29.457 129 89 2 10 137 10 137 6.51e-12 62.8
MsaG038884 AT1G32870.3 29.457 129 89 2 10 137 46 173 7.19e-12 62.4
MsaG038884 AT5G64530.2 30.000 130 77 5 8 135 1 118 8.80e-12 60.1
MsaG038884 AT1G56010.2 27.941 136 91 4 2 133 11 143 1.41e-11 61.2
MsaG038884 AT5G64530.1 30.000 130 77 5 8 135 1 118 2.85e-11 59.3
MsaG038884 AT3G44290.2 27.692 130 89 4 13 139 17 144 5.67e-11 58.9
MsaG038884 AT5G09330.5 30.534 131 87 4 6 133 2 131 6.80e-11 59.7
MsaG038884 AT5G09330.2 30.534 131 87 4 6 133 2 131 6.80e-11 59.7
MsaG038884 AT5G09330.4 30.534 131 87 4 6 133 2 131 6.80e-11 59.7
MsaG038884 AT5G09330.3 30.534 131 87 4 6 133 2 131 6.80e-11 59.7
MsaG038884 AT5G09330.1 30.534 131 87 4 6 133 2 131 6.80e-11 59.7
MsaG038884 AT5G50820.1 29.630 135 85 3 2 133 9 136 8.40e-11 58.2

Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCTACCTGCTGGATTC+AGG 0.237662 7:-81964152 MsaT038884.1:CDS
TGCAGAAAATAGATACTCTT+TGG 0.273533 7:-81963722 MsaT038884.1:intron
GAACCGTAGGTTCGAGAATA+TGG 0.296257 7:-81963668 MsaT038884.1:CDS
TCAAATTCTGACATGACATT+TGG 0.343033 7:+81964063 None:intergenic
ATTGTATTCCTTACCCTAGT+TGG 0.360957 7:+81963466 None:intergenic
GAAAGAACAGATATGTTTAC+TGG 0.378161 7:-81963561 MsaT038884.1:CDS
ATAGATACTCTTTGGAGAAT+AGG 0.394512 7:-81963714 MsaT038884.1:CDS
AGTACTATTTCTTTGATCTC+AGG 0.411387 7:-81963690 MsaT038884.1:CDS
AAGATCCGATAGGCAGCTAT+AGG 0.467878 7:+81963295 None:intergenic
ACAGATATGTTTACTGGATA+GGG 0.475339 7:-81963555 MsaT038884.1:CDS
TCTGACATGACATTTGGAAA+AGG 0.488494 7:+81964069 None:intergenic
ACTGAGCCATGGAGGCTGCC+AGG 0.492712 7:-81964030 MsaT038884.1:CDS
AACAGATATGTTTACTGGAT+AGG 0.498598 7:-81963556 MsaT038884.1:CDS
TCAACAAGTACGCGATCGGT+TGG 0.506848 7:+81964123 None:intergenic
AAACCTCCTGGCAGCCTCCA+TGG 0.506870 7:+81964024 None:intergenic
ATCGGATCTTTAAGATATGA+AGG 0.521757 7:-81963282 None:intergenic
GCTGAGGTTGATCTACCTGC+TGG 0.528162 7:-81964159 MsaT038884.1:CDS
AATATGGATGCAAGAAGAGC+TGG 0.531324 7:-81963652 MsaT038884.1:CDS
ATATATTTCAAACTGAGCCA+TGG 0.550284 7:-81964041 MsaT038884.1:CDS
ACATGACATTTGGAAAAGGT+TGG 0.561346 7:+81964073 None:intergenic
CATCCATATTCTCGAACCTA+CGG 0.563017 7:+81963665 None:intergenic
GTAGAATTTCTGATCCAACT+AGG 0.564430 7:-81963480 MsaT038884.1:CDS
GATGCAAGAAGAGCTGGAAA+TGG 0.566075 7:-81963646 MsaT038884.1:CDS
ATCAAGCTCTGATGACAAGA+TGG 0.571832 7:-81963525 MsaT038884.1:CDS
TCTTTGATCTCAGGAACCGT+AGG 0.573721 7:-81963681 MsaT038884.1:CDS
GAAGAGCTGGAAATGGTGAA+TGG 0.577138 7:-81963639 MsaT038884.1:CDS
GGATCAAACCTGAATCCAGC+AGG 0.578674 7:+81964144 None:intergenic
TAGAATTTCTGATCCAACTA+GGG 0.584601 7:-81963479 MsaT038884.1:intron
GCGAATAGTTCAAAGGAATG+AGG 0.587265 7:-81963617 MsaT038884.1:CDS
TATGTTTACTGGATAGGGCA+AGG 0.598697 7:-81963550 MsaT038884.1:CDS
GTGAATGGCGAATAGTTCAA+AGG 0.604587 7:-81963624 MsaT038884.1:CDS
GGTCACCTATAGCTGCCTAT+CGG 0.611918 7:-81963300 MsaT038884.1:CDS
GCACTCAACAAGTACGCGAT+CGG 0.627245 7:+81964119 None:intergenic
TCATATCTTAAAGATCCGAT+AGG 0.653307 7:+81963285 None:intergenic
AAGCTCTGATGACAAGATGG+TGG 0.668891 7:-81963522 MsaT038884.1:CDS
TATTTCAAACTGAGCCATGG+AGG 0.675314 7:-81964038 MsaT038884.1:CDS
CATGGCTGTAGCTAATGCTG+AGG 0.680042 7:-81964175 MsaT038884.1:CDS
GAGCCATGGAGGCTGCCAGG+AGG 0.693460 7:-81964027 MsaT038884.1:intron
TGGATGCATGAATTTGTCAT+CGG 0.708626 7:-81963502 MsaT038884.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 81963285 81964196 81963285 ID=MsaG038884
Chr7 mRNA 81963285 81964196 81963285 ID=MsaT038884.1;Parent=MsaG038884
Chr7 exon 81963285 81963323 81963285 ID=MsaT038884.1.exon3;Parent=MsaT038884.1
Chr7 CDS 81963285 81963323 81963285 ID=cds.MsaT038884.1;Parent=MsaT038884.1
Chr7 exon 81963480 81963739 81963480 ID=MsaT038884.1.exon2;Parent=MsaT038884.1
Chr7 CDS 81963480 81963739 81963480 ID=cds.MsaT038884.1;Parent=MsaT038884.1
Chr7 exon 81964028 81964196 81964028 ID=MsaT038884.1.exon1;Parent=MsaT038884.1
Chr7 CDS 81964028 81964196 81964028 ID=cds.MsaT038884.1;Parent=MsaT038884.1
Gene Sequence

>MsaT038884.1

ATGGCTGTAGCTAATGCTGAGGTTGATCTACCTGCTGGATTCAGGTTTGATCCAACCGATCGCGTACTTGTTGAGTGCTACCTGACGAAGAAAATATACAACCAACCTTTTCCAAATGTCATGTCAGAATTTGATATATTTCAAACTGAGCCATGGAGGCTGCCAGGAGAAAATAGATACTCTTTGGAGAATAGGAAGTACTATTTCTTTGATCTCAGGAACCGTAGGTTCGAGAATATGGATGCAAGAAGAGCTGGAAATGGTGAATGGCGAATAGTTCAAAGGAATGAGGAGTTTGCTCATTCAAACAATCAACTGATTGTGAGAAAGAACAGATATGTTTACTGGATAGGGCAAGGAAATCAAGCTCTGATGACAAGATGGTGGATGCATGAATTTGTCATCGGTAGAATTTCTGATCCAACTAGGGGGTCACCTATAGCTGCCTATCGGATCTTTAAGATATGA

Protein sequence

>MsaT038884.1

MAVANAEVDLPAGFRFDPTDRVLVECYLTKKIYNQPFPNVMSEFDIFQTEPWRLPGENRYSLENRKYYFFDLRNRRFENMDARRAGNGEWRIVQRNEEFAHSNNQLIVRKNRYVYWIGQGNQALMTRWWMHEFVIGRISDPTRGSPIAAYRIFKI*