AlfalfaGEDB | MsaG038901

M. sativa ssp. caerulea / MsaG038901

KEGG: -
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038901	XP_003624470.1	95.946	296	3	2	1	291	23	314	0.0	585

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038901	sp\|Q9LW31\|FUS3_ARATH	51.634	306	95	12	23	291	24	313	1.71e-86	264

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038901	tr\|Q2HUJ5\|Q2HUJ5_MEDTR	95.946	296	3	2	1	291	23	314	0.0	585

TFs/TRs:

Gene ID	Type	Classification
MsaG038901	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038901	MtrunA17_Chr7g0251891	98.990	198	2	0	94	291	7	204	5.35e-148	413
MsaG038901	MtrunA17_Chr7g0251881	83.333	108	8	3	1	103	22	124	6.56e-51	164
MsaG038901	MtrunA17_Chr7g0237841	54.054	111	51	0	98	208	618	728	2.10e-33	129
MsaG038901	MtrunA17_Chr2g0281191	39.394	132	71	3	103	229	352	479	1.01e-20	92.4
MsaG038901	MtrunA17_Chr4g0012861	39.806	103	61	1	103	205	314	415	7.37e-20	89.7
MsaG038901	MtrunA17_Chr5g0432721	49.412	85	42	1	103	187	321	404	7.60e-20	89.7
MsaG038901	MtrunA17_Chr3g0107701	40.777	103	60	1	103	205	338	439	9.70e-20	89.4
MsaG038901	MtrunA17_Chr4g0047031	33.333	171	95	5	45	207	120	279	1.00e-19	87.8
MsaG038901	MtrunA17_Chr7g0244871	43.182	88	49	1	103	190	12	98	6.23e-19	80.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG038901	AT3G26790.1	51.634	306	95	12	23	291	24	313	1.73e-87	264
MsaG038901	AT3G24650.1	39.352	216	73	6	45	204	459	672	6.54e-36	136
MsaG038901	AT1G28300.1	49.606	127	64	0	95	221	162	288	9.60e-35	129
MsaG038901	AT2G30470.1	39.806	103	61	1	103	205	294	395	5.02e-21	93.6
MsaG038901	AT4G32010.2	34.104	173	98	5	103	272	281	440	1.07e-20	92.4
MsaG038901	AT4G32010.1	34.104	173	98	5	103	272	285	444	1.08e-20	92.4
MsaG038901	AT4G21550.2	38.835	103	60	2	103	205	327	426	4.54e-17	81.6
MsaG038901	AT4G21550.1	38.835	103	60	2	103	205	327	426	4.85e-17	81.6
MsaG038901	AT4G21550.3	38.835	103	60	2	103	205	327	426	5.09e-17	81.3
MsaG038901	AT1G13260.1	35.897	117	67	5	98	209	182	295	5.04e-11	62.8

Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACTGTTCTTCAACTCCTTT+TGG	0.172423	7:-82159067	None:intergenic
TGATCCAATTCTTGAGTAAT+TGG	0.227933	7:-82160133	None:intergenic
ATTATCTTGGTAAACCATAA+TGG	0.319330	7:-82159775	None:intergenic
GGTTTAGTTGCTGCTGCATT+TGG	0.326686	7:+82157044	MsaT038901.1:CDS
ATTGGATCAGTTGAAACATT+TGG	0.328924	7:+82160147	MsaT038901.1:CDS
TACATTCGACTGTTATTGTT+AGG	0.354796	7:-82159607	None:intergenic
TGCATTACTACAGGTAATTC+AGG	0.355023	7:+82159912	MsaT038901.1:intron
ATGACCAATTACTCAAGAAT+TGG	0.363460	7:+82160129	MsaT038901.1:CDS
ACGCTTTGGAGACTCCATTA+TGG	0.373590	7:+82159761	MsaT038901.1:CDS
GAATTCCTTCCTTCGATTCA+AGG	0.374741	7:-82159270	None:intergenic
CTGCATTTGGAACTGTTCAT+AGG	0.379357	7:+82157057	MsaT038901.1:CDS
AACAACAACAACAAGATTAA+CGG	0.429296	7:+82156993	MsaT038901.1:CDS
AGCACACATGGTCTACGCTT+TGG	0.436188	7:+82159747	MsaT038901.1:CDS
TTGTGATCAAGATGAGTATA+TGG	0.437591	7:+82159945	MsaT038901.1:CDS
AGAGGTGGAATTGGAGAGAT+TGG	0.443660	7:-82157176	None:intergenic
CCTTCCTTCGATTCAAGGAC+AGG	0.443951	7:-82159265	None:intergenic
GAACTGTTCATAGGAAGAAA+AGG	0.451838	7:+82157066	MsaT038901.1:CDS
GTTTATAGGAAATCGATCAT+AGG	0.469630	7:+82159027	MsaT038901.1:intron
ATATAGATGGTCTTCATGTA+TGG	0.471743	7:+82159308	MsaT038901.1:CDS
ACAACAACAACAAGATTAAC+GGG	0.472192	7:+82156994	MsaT038901.1:CDS
TATCTTCGTCGATGATTATG+AGG	0.472524	7:+82159993	MsaT038901.1:CDS
TCTCTTGATGACTTCTATTG+AGG	0.486619	7:+82160186	MsaT038901.1:CDS
ATGTATGGAGTTTCAAGTAC+AGG	0.489515	7:+82159323	MsaT038901.1:CDS
GAGGCGTGTGGTTTCATGGC+AGG	0.489847	7:+82156930	None:intergenic
CTCAGCATGAATGATATAGA+TGG	0.492894	7:+82159295	MsaT038901.1:CDS
ATACTTGTATCATTCATTGC+AGG	0.501561	7:-82160045	None:intergenic
CCTTCCTGTCCTTGAATCGA+AGG	0.505006	7:+82159261	MsaT038901.1:CDS
TAGGAGAATGGTGTTGCCTA+AGG	0.511895	7:+82159103	MsaT038901.1:CDS
TAGGCAACACCATTCTCCTA+AGG	0.515359	7:-82159100	None:intergenic
AGATTAACGGGTCGGGTCAA+CGG	0.518369	7:+82157006	MsaT038901.1:CDS
GAGGTAGTAGTAGTAGAAGA+AGG	0.523751	7:-82157146	None:intergenic
TGTTAGCTCCCTTAGGAGAA+TGG	0.536299	7:+82159091	MsaT038901.1:CDS
CAACGGATCCATCATGATCA+TGG	0.538714	7:+82157023	MsaT038901.1:CDS
CTAGGGTTTGTCAACGTGAA+AGG	0.540011	7:+82156966	MsaT038901.1:CDS
GGAGACTTTGTTAGCACACA+TGG	0.544519	7:+82159735	MsaT038901.1:intron
GCAGGTGTTGAAGATGAACT+AGG	0.544873	7:+82156948	MsaT038901.1:CDS
CAACTAAACCATGATCATGA+TGG	0.545398	7:-82157031	None:intergenic
AACAACAAGATTAACGGGTC+GGG	0.549708	7:+82156999	MsaT038901.1:CDS
ATAGGAAGAAAAGGATGGCT+AGG	0.560627	7:+82157075	MsaT038901.1:CDS
CAACAACAAGATTAACGGGT+CGG	0.560654	7:+82156998	MsaT038901.1:CDS
ACAGTGATGTTAGCTCCCTT+AGG	0.583324	7:+82159084	MsaT038901.1:CDS
CAGGTGTTGAAGATGAACTA+GGG	0.583873	7:+82156949	MsaT038901.1:CDS
CCTGTCCTTGAATCGAAGGA+AGG	0.585425	7:+82159265	MsaT038901.1:CDS
TATAGGAAATCGATCATAGG+AGG	0.597683	7:+82159030	MsaT038901.1:intron
AGGCAACACCATTCTCCTAA+GGG	0.607377	7:-82159099	None:intergenic
CCTTCGATTCAAGGACAGGA+AGG	0.620428	7:-82159261	None:intergenic
TGGAGAGATTGGCACGTGCG+AGG	0.625104	7:-82157165	None:intergenic
ATGTATGTACTTGAAAACAC+TGG	0.631186	7:+82159625	MsaT038901.1:CDS
TGTTCATAGGAAGAAAAGGA+TGG	0.632115	7:+82157070	MsaT038901.1:CDS
AAGTGGTGAGTCATTTGAGA+TGG	0.633283	7:-82160088	None:intergenic
TAACTTGCAGAAAGCAGCAG+AGG	0.635910	7:+82159234	MsaT038901.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	82156945	82160206	82156945	ID=MsaG038901
Chr7	mRNA	82156945	82160206	82156945	ID=MsaT038901.1;Parent=MsaG038901
Chr7	exon	82156945	82157223	82156945	ID=MsaT038901.1.exon1;Parent=MsaT038901.1
Chr7	CDS	82156945	82157223	82156945	ID=cds.MsaT038901.1;Parent=MsaT038901.1
Chr7	exon	82159035	82159124	82159035	ID=MsaT038901.1.exon2;Parent=MsaT038901.1
Chr7	CDS	82159035	82159124	82159035	ID=cds.MsaT038901.1;Parent=MsaT038901.1
Chr7	exon	82159244	82159344	82159244	ID=MsaT038901.1.exon3;Parent=MsaT038901.1
Chr7	CDS	82159244	82159344	82159244	ID=cds.MsaT038901.1;Parent=MsaT038901.1
Chr7	exon	82159600	82159646	82159600	ID=MsaT038901.1.exon4;Parent=MsaT038901.1
Chr7	CDS	82159600	82159646	82159600	ID=cds.MsaT038901.1;Parent=MsaT038901.1
Chr7	exon	82159736	82159812	82159736	ID=MsaT038901.1.exon5;Parent=MsaT038901.1
Chr7	CDS	82159736	82159812	82159736	ID=cds.MsaT038901.1;Parent=MsaT038901.1
Chr7	exon	82159925	82160206	82159925	ID=MsaT038901.1.exon6;Parent=MsaT038901.1
Chr7	CDS	82159925	82160206	82159925	ID=cds.MsaT038901.1;Parent=MsaT038901.1

Gene Sequence

>MsaT038901.1

ATGGCAGGTGTTGAAGATGAACTAGGGTTTGTCAACGTGAAAGGAGACAACAACAACAACAAGATTAACGGGTCGGGTCAACGGATCCATCATGATCATGGTTTAGTTGCTGCTGCATTTGGAACTGTTCATAGGAAGAAAAGGATGGCTAGGCAAAGAAGATCTTCATCTTCAACCATCACTATTCATCTCAAAAATCTTCCTTCTTCTACTACTACTACCTCGCACGTGCCAATCTCTCCAATTCCACCTCTTTTTCATTCTCTCCCTCCCGCACGTGAAATCGATCATAGGAGGTTGAGATTCCTTTTCCAAAAGGAGTTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTGTTGCCTAAGAAAGCAGCAGAGGCTTTCCTTCCTGTCCTTGAATCGAAGGAAGGAATTCTTCTCAGCATGAATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAACAGTCGAATGTATGTACTTGAAAACACTGGAGACTTTGTTAGCACACATGGTCTACGCTTTGGAGACTCCATTATGGTTTACCAAGATAATCAAAATCACAATTATGTAATTCAGGCAAAGAAAGCTTGTGATCAAGATGAGTATATGGAAGAAGCTAATGATACAATCAATCATATCTTCGTCGATGATTATGAGGTGAACAAAAGTTGCTTTGATGTAGCTTATCCTGCAATGAATGATACAAGTATGTCATTTATATATGACACAACCATCTCAAATGACTCACCACTTGATTTTTTGGGTGGATCAATGACCAATTACTCAAGAATTGGATCAGTTGAAACATTTGGCTCTGTTGAGAATCTGTCTCTTGATGACTTCTATTGA

Protein sequence

>MsaT038901.1

MAGVEDELGFVNVKGDNNNNKINGSGQRIHHDHGLVAAAFGTVHRKKRMARQRRSSSSTITIHLKNLPSSTTTTSHVPISPIPPLFHSLPPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPVLESKEGILLSMNDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDSIMVYQDNQNHNYVIQAKKACDQDEYMEEANDTINHIFVDDYEVNKSCFDVAYPAMNDTSMSFIYDTTISNDSPLDFLGGSMTNYSRIGSVETFGSVENLSLDDFY*