AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG038911


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG038911 MtrunA17_Chr7g0252041 97.521 484 3 5 1 484 1 475 0.0 949
MsaG038911 MtrunA17_Chr3g0131691 46.228 517 179 18 21 483 12 483 3.94e-119 358
MsaG038911 MtrunA17_Chr3g0141091 44.724 199 82 5 285 482 163 334 5.64e-40 147
MsaG038911 MtrunA17_Chr5g0411541 44.878 205 86 5 282 482 141 322 1.00e-37 140
MsaG038911 MtrunA17_Chr1g0211081 34.742 213 118 5 282 476 304 513 7.94e-31 125
MsaG038911 MtrunA17_Chr3g0089131 67.241 58 19 0 400 457 5 62 5.68e-21 87.4
MsaG038911 MtrunA17_Chr8g0365711 29.787 188 123 3 288 475 237 415 1.14e-18 88.2
MsaG038911 MtrunA17_Chr2g0298751 33.163 196 118 6 286 474 43 232 1.63e-18 85.1
MsaG038911 MtrunA17_Chr1g0185621 34.463 177 104 5 285 457 465 633 2.50e-18 88.2
MsaG038911 MtrunA17_Chr3g0135471 69.767 43 13 0 415 457 1 43 3.08e-15 70.5
MsaG038911 MtrunA17_Chr5g0400671 29.412 187 110 5 295 475 154 324 1.45e-14 74.7
MsaG038911 MtrunA17_Chr5g0400661 26.263 198 135 4 288 475 138 334 1.88e-14 74.3
MsaG038911 MtrunA17_Chr2g0318461 67.442 43 14 0 415 457 1 43 2.35e-14 67.8
MsaG038911 MtrunA17_Chr4g0002801 29.787 188 112 7 297 475 154 330 4.41e-14 73.2
MsaG038911 MtrunA17_Chr2g0280161 28.931 159 98 3 297 453 179 324 7.05e-14 72.8
MsaG038911 MtrunA17_Chr8g0346161 57.895 57 24 0 293 349 289 345 7.97e-14 73.6
MsaG038911 MtrunA17_Chr2g0320291 28.758 153 94 1 283 435 121 258 8.46e-14 72.4
MsaG038911 MtrunA17_Chr7g0275821 45.977 87 44 1 293 376 250 336 1.01e-13 73.2
MsaG038911 MtrunA17_Chr4g0028071 51.562 64 31 0 288 351 142 205 1.01e-13 72.4
MsaG038911 MtrunA17_Chr4g0052841 25.510 196 133 4 286 476 283 470 1.07e-13 73.2
MsaG038911 MtrunA17_Chr8g0346151 60.000 55 22 0 293 347 277 331 1.38e-13 72.8
MsaG038911 MtrunA17_Chr3g0089121 50.000 80 29 2 324 401 1 71 2.81e-13 66.2
MsaG038911 MtrunA17_Chr4g0049331 25.352 213 121 5 272 466 107 299 3.12e-13 70.5
MsaG038911 MtrunA17_Chr8g0366751 33.133 166 96 4 293 451 460 617 3.91e-13 71.6
MsaG038911 MtrunA17_Chr4g0052821 27.551 196 125 5 288 476 283 468 4.34e-13 71.2
MsaG038911 MtrunA17_Chr4g0002781 28.856 201 123 8 282 475 162 349 6.55e-13 70.1
MsaG038911 MtrunA17_Chr7g0260841 42.045 88 44 1 270 350 323 410 1.07e-12 70.1
MsaG038911 MtrunA17_Chr4g0033391 28.293 205 128 5 270 473 125 311 1.62e-12 68.6
MsaG038911 MtrunA17_Chr5g0411341 29.231 195 119 5 293 479 491 674 1.71e-12 69.7
MsaG038911 MtrunA17_Chr3g0089111 42.982 114 54 4 221 324 113 225 1.81e-12 67.0
MsaG038911 MtrunA17_Chr4g0054571 28.169 142 97 2 297 438 152 288 8.05e-12 66.6
MsaG038911 MtrunA17_Chr5g0400621 30.189 159 97 4 296 453 158 303 9.72e-12 66.2
MsaG038911 MtrunA17_Chr7g0225901 27.461 193 111 5 270 453 62 234 1.25e-11 65.1
MsaG038911 MtrunA17_Chr8g0336681 26.752 157 110 3 297 453 158 309 1.71e-11 65.5
MsaG038911 MtrunA17_Chr2g0307131 27.184 206 126 6 270 470 156 342 2.15e-11 65.5
MsaG038911 MtrunA17_Chr5g0404921 63.462 104 18 1 53 156 1 84 2.77e-11 60.5
MsaG038911 MtrunA17_Chr2g0333621 25.248 202 134 4 281 476 122 312 4.00e-11 64.3
MsaG038911 MtrunA17_Chr4g0033291 27.273 220 139 6 256 473 119 319 4.30e-11 64.3
MsaG038911 MtrunA17_Chr0c01g0489461 28.571 217 116 9 264 447 157 367 7.63e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG038911 AT3G26744.1 55.102 392 138 11 119 483 113 493 7.98e-117 352
MsaG038911 AT3G26744.4 55.102 392 138 11 119 483 113 493 7.98e-117 352
MsaG038911 AT3G26744.2 55.102 392 138 11 119 483 113 493 7.98e-117 352
MsaG038911 AT1G12860.1 56.676 367 111 10 128 483 120 449 5.47e-112 338
MsaG038911 AT3G26744.6 54.098 366 130 11 119 457 113 467 2.11e-100 310
MsaG038911 AT1G12860.2 55.357 336 112 10 128 457 120 423 3.47e-95 295
MsaG038911 AT5G65640.1 44.175 206 95 4 280 482 160 348 7.97e-38 142
MsaG038911 AT5G10570.1 42.927 205 87 4 280 482 136 312 1.72e-33 129
MsaG038911 AT2G16910.1 40.102 197 99 6 294 476 313 504 5.32e-31 126
MsaG038911 AT5G65640.2 70.270 74 19 1 280 350 160 233 2.09e-21 94.7
MsaG038911 AT1G12860.3 38.725 204 95 8 128 326 120 298 1.23e-18 87.0
MsaG038911 AT5G57150.1 32.240 183 115 4 293 472 52 228 1.24e-17 82.8
MsaG038911 AT3G26744.5 36.752 234 112 10 119 325 113 337 5.12e-17 82.8
MsaG038911 AT4G29930.2 30.323 155 88 3 294 448 53 187 2.37e-16 78.6
MsaG038911 AT4G29930.5 30.323 155 88 3 294 448 53 187 7.43e-16 77.4
MsaG038911 AT5G57150.3 33.125 160 98 4 293 449 53 206 7.99e-16 77.0
MsaG038911 AT5G57150.2 33.333 159 97 4 293 448 53 205 1.06e-15 76.6
MsaG038911 AT5G57150.5 33.333 159 97 4 293 448 52 204 1.27e-15 76.3
MsaG038911 AT4G29930.6 30.323 155 91 4 294 448 53 190 2.68e-15 75.5
MsaG038911 AT2G28160.1 36.283 113 59 2 239 351 88 187 2.72e-15 77.4
MsaG038911 AT2G28160.2 36.283 113 59 2 239 351 88 187 3.24e-15 77.0
MsaG038911 AT5G57150.4 33.333 159 97 4 293 448 53 205 6.67e-15 75.1
MsaG038911 AT2G46510.1 46.914 81 35 1 278 350 370 450 7.94e-15 77.4
MsaG038911 AT4G29930.4 47.761 67 35 0 294 360 53 119 1.63e-14 72.4
MsaG038911 AT4G09820.1 33.333 153 67 4 288 437 353 473 2.08e-14 75.9
MsaG038911 AT4G29930.1 47.761 67 35 0 294 360 53 119 3.47e-14 72.8
MsaG038911 AT4G29930.3 47.059 68 36 0 293 360 52 119 4.98e-14 72.8
MsaG038911 AT4G29930.7 47.059 68 36 0 293 360 52 119 4.98e-14 72.8
MsaG038911 AT1G01260.1 40.650 123 56 3 242 359 392 502 1.06e-13 73.9
MsaG038911 AT1G01260.2 40.650 123 56 3 242 359 392 502 1.06e-13 73.9
MsaG038911 AT1G01260.3 40.650 123 56 3 242 359 392 502 1.06e-13 73.9
MsaG038911 AT4G17880.1 30.159 189 114 6 293 479 414 586 1.86e-13 73.2
MsaG038911 AT5G46760.1 31.707 164 94 5 293 451 413 563 3.98e-13 72.0
MsaG038911 AT1G32640.1 29.744 195 108 6 293 479 450 623 5.39e-13 71.6
MsaG038911 AT4G00870.1 47.761 67 33 1 288 352 240 306 2.53e-12 68.9
MsaG038911 AT1G10610.3 41.379 87 46 1 271 352 138 224 3.15e-12 68.2
MsaG038911 AT2G22760.2 23.669 169 118 4 286 453 110 268 3.96e-12 67.4
MsaG038911 AT1G10610.2 41.379 87 46 1 271 352 205 291 4.64e-12 68.2
MsaG038911 AT5G46830.1 31.250 192 96 8 293 470 341 510 6.24e-12 68.2
MsaG038911 AT1G10610.1 41.379 87 46 1 271 352 235 321 6.79e-12 67.8
MsaG038911 AT2G22760.1 23.669 169 118 4 286 453 110 268 1.16e-11 65.9
MsaG038911 AT2G22770.1 26.752 157 110 3 286 438 123 278 4.73e-11 64.3
MsaG038911 AT4G16430.1 41.975 81 40 1 277 350 295 375 5.28e-11 65.1
MsaG038911 AT2G22750.5 27.273 143 97 2 296 438 151 286 8.22e-11 63.9

Find 138 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCATTTCAAATGGGTTAT+TGG 0.117688 7:-82268281 None:intergenic
GTTTGAAAATGGATTCTTTA+TGG 0.140965 7:+82268303 MsaT038911.1:CDS
TTTGAAATGGGGTTTGAAAA+TGG 0.212995 7:+82268292 MsaT038911.1:CDS
AATCTATGGTGTTTGTGTTT+TGG 0.283895 7:-82268195 None:intergenic
TCAGGTTCGGGTTGTGGTTC+GGG 0.284310 7:-82268088 None:intergenic
TTTGAAAATGGATTCTTTAT+GGG 0.287664 7:+82268304 MsaT038911.1:CDS
TAGAAGTTGTTGTTGTTATC+AGG 0.296637 7:-82268106 None:intergenic
ATCAGGTTCGGGTTGTGGTT+CGG 0.308632 7:-82268089 None:intergenic
TTGTGTTTAGGTTCGGAGTT+AGG 0.321519 7:-82268001 None:intergenic
ACCAATAACCCATTTGAAAT+GGG 0.328953 7:+82268280 MsaT038911.1:CDS
TCAGCCATCAAATTCTTTGC+AGG 0.331079 7:-82268766 None:intergenic
GTTGTTGTTGTTATCAGGTT+CGG 0.335301 7:-82268101 None:intergenic
TACCAATAACCCATTTGAAA+TGG 0.336052 7:+82268279 MsaT038911.1:CDS
TGGATTTGAAATTGAATCTA+TGG 0.348162 7:-82268209 None:intergenic
AGAGAAAGGTGGAGAAGAGC+TGG 0.362560 7:+82268590 MsaT038911.1:CDS
TTGTTGTTGTTATCAGGTTC+GGG 0.363227 7:-82268100 None:intergenic
GCTATCTACCATGAGGGCTT+TGG 0.366010 7:+82269941 MsaT038911.1:CDS
TCAAATGGGACTGTTGTTAC+TGG 0.376369 7:+82268709 MsaT038911.1:CDS
AACAAGAATCACCTTCTTCA+TGG 0.390694 7:+82267972 MsaT038911.1:CDS
TACAGGTGGAAGTTAGAGTA+AGG 0.391657 7:+82269865 MsaT038911.1:intron
AGGGACCCACCCATGAAAAC+AGG 0.394342 7:-82268349 None:intergenic
TTGTTATCAGGTTCGGGTTG+TGG 0.401185 7:-82268094 None:intergenic
TGTGGTTCGGGTTTGAAGAA+AGG 0.402846 7:-82268076 None:intergenic
AATGATTTGAATAATTCAAA+TGG 0.403338 7:+82268694 MsaT038911.1:CDS
CGCTGTTTCAGAAGCGTCGT+GGG 0.407593 7:+82268524 MsaT038911.1:CDS
GCTGTTATCAGTTGTTTCAA+TGG 0.414184 7:+82269990 MsaT038911.1:CDS
GTGGTTGTTGTGTTTAGGTT+CGG 0.421630 7:-82268008 None:intergenic
TGTTCGTGGTTGTTGTGTTT+AGG 0.423157 7:-82268013 None:intergenic
TGATGATGTTGTTGTGGTTG+TGG 0.425371 7:-82268466 None:intergenic
GCAGCAATGCAGAGAAGGTC+AGG 0.429129 7:+82270251 MsaT038911.1:intron
ATGAACTTGTTGAGGTGGTA+AGG 0.429477 7:-82267909 None:intergenic
TAATAATCTTCATAATGAAC+TGG 0.430336 7:+82269495 MsaT038911.1:CDS
GAAGGTTGCAGCAGTGAGCC+AGG 0.431678 7:-82269529 None:intergenic
GCTTCCTGCAAAGAATTTGA+TGG 0.433280 7:+82268762 MsaT038911.1:CDS
CAGCACTGCTTTAATTTGCT+CGG 0.447013 7:-82270283 None:intergenic
TAGATCCTCTTTGACTCGAC+AGG 0.449537 7:-82269599 None:intergenic
GTGGTTCGGGTTTGAAGAAA+GGG 0.450268 7:-82268075 None:intergenic
AGCACTGCTTTAATTTGCTC+GGG 0.451779 7:-82270282 None:intergenic
GAAGAAGGAAGTGGTGGTGG+TGG 0.454840 7:+82268616 MsaT038911.1:CDS
GCAATAGCTATTGCTATGGC+TGG 0.459874 7:+82268043 MsaT038911.1:CDS
TATCATTGAGTTTCTTCCTC+CGG 0.461791 7:-82268795 None:intergenic
CCTTGGATTGGATGTTCAGC+AGG 0.462769 7:+82269968 MsaT038911.1:CDS
GAAGGAAGTGGTGGTGGTGG+TGG 0.463647 7:+82268619 MsaT038911.1:CDS
ATGATAGGTTGTATATGCTT+AGG 0.465770 7:+82268812 MsaT038911.1:CDS
GGCTTTGGATAACCTTGGAT+TGG 0.469562 7:+82269956 MsaT038911.1:CDS
TTCCCCACGGTCTCCAACCT+CGG 0.472317 7:-82268559 None:intergenic
GAGAAGAGCTGGGAAGAAGA+AGG 0.472684 7:+82268601 MsaT038911.1:CDS
AATTATGATTCTGATGAGAA+TGG 0.474232 7:+82268670 MsaT038911.1:CDS
GGCGTTGGAGATTCCGAGGT+TGG 0.477216 7:+82268546 MsaT038911.1:CDS
TCGGTGGAGTGGGTGTCAAC+GGG 0.480196 7:-82269570 None:intergenic
ATGATTTGAATAATTCAAAT+GGG 0.485439 7:+82268695 MsaT038911.1:CDS
GCAAATTAAAGCAGTGCTGT+TGG 0.486197 7:+82270287 MsaT038911.1:CDS
CATGAGAAAATTGTCTGGTA+AGG 0.488924 7:-82268170 None:intergenic
TTTGGGGCTTAGCAAGTCAC+CGG 0.489029 7:-82269626 None:intergenic
TTTCAAACCCCATTTCAAAT+GGG 0.490689 7:-82268288 None:intergenic
CTATTGCAATGTCTTGTTCG+TGG 0.492928 7:-82268027 None:intergenic
ACAAAACATATGAATGTTGA+CGG 0.497241 7:-82269898 None:intergenic
TTGGATTCAGCGGGCTACCA+TGG 0.497757 7:+82270306 MsaT038911.1:CDS
TCAGAAGCGTCGTGGGGCGT+TGG 0.498023 7:+82268531 MsaT038911.1:CDS
CGCTTCTGAAACAGCGTCGT+GGG 0.499455 7:-82268517 None:intergenic
GTCGGTGGAGTGGGTGTCAA+CGG 0.499586 7:-82269571 None:intergenic
ATGAGGGCTTTGGATAACCT+TGG 0.500549 7:+82269951 MsaT038911.1:CDS
AGGAAACTCAGAAGCTGAAA+GGG 0.502922 7:-82268368 None:intergenic
GAAGAAGAAGGAAGTGGTGG+TGG 0.503536 7:+82268613 MsaT038911.1:CDS
GAGAAAGGTGGAGAAGAGCT+GGG 0.504559 7:+82268591 MsaT038911.1:CDS
TGTTGTTGTGGTTCAGTCCA+AGG 0.506094 7:-82267947 None:intergenic
ATGGACAGGGCTTCAATACT+CGG 0.509966 7:+82269433 MsaT038911.1:CDS
GAAGCACTGAAAGGTGGTAC+TGG 0.513909 7:-82268415 None:intergenic
GGAGGAAGAAACTCAATGAT+AGG 0.514773 7:+82268797 MsaT038911.1:CDS
AGCTGGGAAGAAGAAGGAAG+TGG 0.518800 7:+82268607 MsaT038911.1:CDS
TCTCTTCTTCTTGTTCCCCA+CGG 0.521728 7:-82268572 None:intergenic
TGGTGCATGAGAAAATTGTC+TGG 0.522663 7:-82268175 None:intergenic
ATTATGATTCTGATGAGAAT+GGG 0.525864 7:+82268671 MsaT038911.1:CDS
ATTTGATGGCTGAGAGGCGC+CGG 0.526012 7:+82268776 MsaT038911.1:CDS
CAGGGAAGAGTCGGTGGAGT+GGG 0.527264 7:-82269580 None:intergenic
GTCAAAGAGGATCTATATCC+CGG 0.532043 7:+82269607 MsaT038911.1:CDS
GAGGAAACTCAGAAGCTGAA+AGG 0.532923 7:-82268369 None:intergenic
TCAGAAGGGGAAGAAGAAGA+AGG 0.533310 7:+82268738 MsaT038911.1:CDS
TGAACTTGTTGAGGTGGTAA+GGG 0.534290 7:-82267908 None:intergenic
ATAATACTCTCACTATACCT+TGG 0.539865 7:+82267930 MsaT038911.1:CDS
ACAGGTGGAAGTTAGAGTAA+GGG 0.540261 7:+82269866 MsaT038911.1:intron
AGCAGTGCTGTTGGATTCAG+CGG 0.541017 7:+82270296 MsaT038911.1:CDS
CAGAAGGGGAAGAAGAAGAA+GGG 0.544979 7:+82268739 MsaT038911.1:CDS
GTGGAAGTTAGAGTAAGGGA+AGG 0.547671 7:+82269870 MsaT038911.1:CDS
GATTCCGAGGTTGGAGACCG+TGG 0.550901 7:+82268555 MsaT038911.1:CDS
CCAATAACCCATTTGAAATG+GGG 0.552722 7:+82268281 MsaT038911.1:CDS
AGATGCAGTTGACTACTTGA+AGG 0.553444 7:+82269456 MsaT038911.1:CDS
TCTTAGCAGCAATGCAGAGA+AGG 0.556860 7:+82270246 MsaT038911.1:intron
ACGCTGTTTCAGAAGCGTCG+TGG 0.560372 7:+82268523 MsaT038911.1:CDS
TGAAAGCTTGCACTTGCAGA+AGG 0.560535 7:-82269547 None:intergenic
CATTGCAATAGCTATTGCTA+TGG 0.561250 7:+82268039 MsaT038911.1:CDS
AAGGTTATCCAAAGCCCTCA+TGG 0.562752 7:-82269949 None:intergenic
TTTAGGTTCGGAGTTAGGTG+TGG 0.567779 7:-82267996 None:intergenic
TGATGATGATGATGTTGTTG+TGG 0.568352 7:-82268472 None:intergenic
ATTCCGAGGTTGGAGACCGT+GGG 0.568857 7:+82268556 MsaT038911.1:CDS
TGTTACTGGTGGAGATCAGA+AGG 0.571281 7:+82268723 MsaT038911.1:CDS
TGGAAGTTAGAGTAAGGGAA+GGG 0.572558 7:+82269871 MsaT038911.1:CDS
TGTGGTTGAGCTAGCTCAAG+AGG 0.578961 7:-82268448 None:intergenic
ATGAGAAAATTGTCTGGTAA+GGG 0.579342 7:-82268169 None:intergenic
GAACAAGAAGAAGAGAAAGG+TGG 0.581110 7:+82268579 MsaT038911.1:CDS
TGGGAAGAAGAAGGAAGTGG+TGG 0.581705 7:+82268610 MsaT038911.1:CDS
TTAGGTGTGGACCATGAAGA+AGG 0.581820 7:-82267983 None:intergenic
GTATTATGAACTTGTTGAGG+TGG 0.581897 7:-82267914 None:intergenic
TTGTTGTGAAAGAAAGAGTG+TGG 0.583509 7:-82268229 None:intergenic
TCTTCCCTGTCGAGTCAAAG+AGG 0.586826 7:+82269594 MsaT038911.1:CDS
GGGACCCACCCATGAAAACA+GGG 0.591270 7:-82268348 None:intergenic
AGAAGGGGAAGAAGAAGAAG+GGG 0.595564 7:+82268740 MsaT038911.1:CDS
AATGGGACTGTTGTTACTGG+TGG 0.595592 7:+82268712 MsaT038911.1:CDS
TTGACTCGACAGGGAAGAGT+CGG 0.596564 7:-82269589 None:intergenic
TGATGGCTGAGAGGCGCCGG+AGG 0.599553 7:+82268779 MsaT038911.1:CDS
ACTTGAAGGAGCTGCTGCAG+CGG 0.611585 7:+82269470 MsaT038911.1:CDS
ACTCGACAGGGAAGAGTCGG+TGG 0.612573 7:-82269586 None:intergenic
CAAAGAATTTGATGGCTGAG+AGG 0.613701 7:+82268770 MsaT038911.1:CDS
ACAGGGAAGAGTCGGTGGAG+TGG 0.614037 7:-82269581 None:intergenic
ATTAGATGTGTTCAGAGCTG+AGG 0.615420 7:+82270019 MsaT038911.1:CDS
ATGGTAGATAGCAAAAGTCC+TGG 0.618329 7:-82269930 None:intergenic
ATAGAAAACGAAGCACTGAA+AGG 0.618637 7:-82268424 None:intergenic
GAACTGGAATCAACTCCACC+TGG 0.619030 7:+82269511 MsaT038911.1:CDS
GGGGAACAAGAAGAAGAGAA+AGG 0.621823 7:+82268576 MsaT038911.1:CDS
ACTTCATTCAATTCAAACCA+TGG 0.624434 7:-82270323 None:intergenic
GTTACTGGTGGAGATCAGAA+GGG 0.630933 7:+82268724 MsaT038911.1:CDS
TGTTGTGCCTAAAATTAGCA+AGG 0.631769 7:+82268837 MsaT038911.1:CDS
TTGGGGCTTAGCAAGTCACC+GGG 0.636110 7:-82269625 None:intergenic
GTGGGGCGTTGGAGATTCCG+AGG 0.636781 7:+82268542 MsaT038911.1:CDS
GAAAACGAAGCACTGAAAGG+TGG 0.640228 7:-82268421 None:intergenic
CCTGCTGAACATCCAATCCA+AGG 0.640256 7:-82269968 None:intergenic
ACGCTTCTGAAACAGCGTCG+TGG 0.647570 7:-82268518 None:intergenic
GCAGTGCTGTTGGATTCAGC+GGG 0.652187 7:+82270297 MsaT038911.1:CDS
AGATCCTCTTTGACTCGACA+GGG 0.653087 7:-82269598 None:intergenic
GCACTGCTTTAATTTGCTCG+GGG 0.667619 7:-82270281 None:intergenic
TTACTGGTGGAGATCAGAAG+GGG 0.669179 7:+82268725 MsaT038911.1:CDS
GGTTGCAGCAGTGAGCCAGG+TGG 0.670958 7:-82269526 None:intergenic
GCTGTTTCAGAAGCGTCGTG+GGG 0.673826 7:+82268525 MsaT038911.1:CDS
AGAGTATTATGAACTTGTTG+AGG 0.689686 7:-82267917 None:intergenic
TTCCGAGGTTGGAGACCGTG+GGG 0.692226 7:+82268557 MsaT038911.1:CDS
GGACCCACCCATGAAAACAG+GGG 0.693712 7:-82268347 None:intergenic
GCAGCATCGAGTTCAAGACT+CGG 0.694688 7:-82268391 None:intergenic
GCATCGAGTTCAAGACTCGG+AGG 0.717250 7:-82268388 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr7 gene 82267890 82270338 82267890 ID=MsaG038911
Chr7 mRNA 82267890 82270338 82267890 ID=MsaT038911.1;Parent=MsaG038911
Chr7 exon 82267890 82268858 82267890 ID=MsaT038911.1.exon1;Parent=MsaT038911.1
Chr7 CDS 82267890 82268858 82267890 ID=cds.MsaT038911.1;Parent=MsaT038911.1
Chr7 exon 82269433 82269663 82269433 ID=MsaT038911.1.exon2;Parent=MsaT038911.1
Chr7 CDS 82269433 82269663 82269433 ID=cds.MsaT038911.1;Parent=MsaT038911.1
Chr7 exon 82269870 82270040 82269870 ID=MsaT038911.1.exon3;Parent=MsaT038911.1
Chr7 CDS 82269870 82270040 82269870 ID=cds.MsaT038911.1;Parent=MsaT038911.1
Chr7 exon 82270255 82270338 82270255 ID=MsaT038911.1.exon4;Parent=MsaT038911.1
Chr7 CDS 82270255 82270338 82270255 ID=cds.MsaT038911.1;Parent=MsaT038911.1
Gene Sequence

>MsaT038911.1

ATGGAGAGATACACGTTACCCTTACCACCTCAACAAGTTCATAATACTCTCACTATACCTTGGACTGAACCACAACAACAACAACAAGAATCACCTTCTTCATGGTCCACACCTAACTCCGAACCTAAACACAACAACCACGAACAAGACATTGCAATAGCTATTGCTATGGCTGGTTCTTCTATCCCTTTCTTCAAACCCGAACCACAACCCGAACCTGATAACAACAACAACTTCTACAACAACAACAACAACGTTGTTAATGTTAATAATGTTATTCCCTTACCAGACAATTTTCTCATGCACCAAAACACAAACACCATAGATTCAATTTCAAATCCACACTCTTTCTTTCACAACAATAACAACTACTTCTTCAACAACAATAATACCAATAACCCATTTGAAATGGGGTTTGAAAATGGATTCTTTATGGGAAACAACAACACTTCAAATTCCCCTGTTTTCATGGGTGGGTCCCTTTCAGCTTCTGAGTTTCCTCCGAGTCTTGAACTCGATGCTGCTCCAGTACCACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAGCTAGCTCAACCACAACCACAACAACATCATCATCATCATCAGCAACAACAACAACAACAACCCACGACGCTGTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTGGAGACCGTGGGGAACAAGAAGAAGAGAAAGGTGGAGAAGAGCTGGGAAGAAGAAGGAAGTGGTGGTGGTGGTGGTGATGATGTTGATGATTTTTCTGAGTTGAATTATGATTCTGATGAGAATGGGAATGATTTGAATAATTCAAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGGAAGAAGAAGAAGGGGCTTCCTGCAAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTATATGCTTAGGTCTGTTGTGCCTAAAATTAGCAAGATGGACAGGGCTTCAATACTCGGAGATGCAGTTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATAATCTTCATAATGAACTGGAATCAACTCCACCTGGCTCACTGCTGCAACCTTCTGCAAGTGCAAGCTTTCACCCGTTGACACCCACTCCACCGACTCTTCCCTGTCGAGTCAAAGAGGATCTATATCCCGGTGACTTGCTAAGCCCCAAAAACCAATCTCCCAAGGTGGAAGTTAGAGTAAGGGAAGGGAGAGCCGTCAACATTCATATGTTTTGTACTCGCAGACCAGGACTTTTGCTATCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATCAGTTGTTTCAATGGCTTTGCATTAGATGTGTTCAGAGCTGAGCAATGCAGAGAAGGTCAGGATGTACTCCCCGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCGGGCTACCATGGTTTGAATTGA

Protein sequence

>MsaT038911.1

MERYTLPLPPQQVHNTLTIPWTEPQQQQQESPSSWSTPNSEPKHNNHEQDIAIAIAMAGSSIPFFKPEPQPEPDNNNNFYNNNNNVVNVNNVIPLPDNFLMHQNTNTIDSISNPHSFFHNNNNYFFNNNNTNNPFEMGFENGFFMGNNNTSNSPVFMGGSLSASEFPPSLELDAAPVPPFSASFSMPLELAQPQPQQHHHHHQQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKSWEEEGSGGGGGDDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGYHGLN*