AlfalfaGEDB | MsaG039059

M. sativa ssp. caerulea / MsaG039059

KEGG: -
GO: -
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039059	XP_003624691.1	79.921	757	83	6	3	691	19	774	0.0	1165

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039059	sp\|Q8LFN2\|Y3037_ARATH	55.782	735	242	8	22	679	43	771	0.0	783

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039059	tr\|Q2HVC0\|Q2HVC0_MEDTR	79.921	757	83	6	3	691	19	774	0.0	1165

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039059	MtrunA17_Chr7g0253951	79.921	757	83	6	3	691	19	774	0.0	1165
MsaG039059	MtrunA17_Chr6g0460961	58.060	763	243	7	4	691	25	785	0.0	849
MsaG039059	MtrunA17_Chr8g0362301	40.767	704	359	11	4	668	27	711	1.81e-165	492
MsaG039059	MtrunA17_Chr6g0459201	35.000	760	387	17	3	674	29	769	6.58e-136	417
MsaG039059	MtrunA17_Chr3g0116231	34.626	748	385	12	4	666	25	753	5.12e-134	412
MsaG039059	MtrunA17_Chr7g0226051	35.425	765	379	18	3	672	21	765	1.95e-133	411
MsaG039059	MtrunA17_Chr8g0355271	54.918	366	155	6	319	681	475	833	6.94e-126	394
MsaG039059	MtrunA17_Chr8g0355271	50.000	210	102	2	83	292	178	384	1.23e-54	201
MsaG039059	MtrunA17_Chr5g0416151	39.356	559	294	11	4	549	30	556	9.22e-112	348
MsaG039059	MtrunA17_Chr7g0229941	27.477	666	413	23	25	658	38	665	1.35e-50	187

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039059	AT3G03770.2	55.782	735	242	8	22	679	43	771	0.0	783
MsaG039059	AT3G03770.3	55.782	735	242	8	22	679	43	771	0.0	783
MsaG039059	AT3G03770.1	55.782	735	242	8	22	679	43	771	0.0	783
MsaG039059	AT1G14390.1	40.225	711	360	16	2	668	26	715	1.01e-156	470
MsaG039059	AT2G02780.1	37.603	726	389	14	2	678	26	736	6.52e-145	440
MsaG039059	AT5G63410.1	37.106	698	367	15	4	671	23	678	7.17e-145	438
MsaG039059	AT5G14210.1	35.631	769	387	15	3	678	22	775	2.03e-142	435
MsaG039059	AT5G14210.2	34.375	800	386	16	3	678	22	806	6.09e-136	419
MsaG039059	AT2G02780.3	38.208	636	330	13	2	589	26	646	4.99e-123	382
MsaG039059	AT5G14210.3	35.269	689	339	14	3	598	22	696	3.90e-120	377

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Find 135 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTCTGCATCATTTG+TGG	0.408974	7:-84201708	None:intergenic
AACAAGCTTAGGAGCTGATG+AGG	0.612825	7:+84202007	MsaT039059.1:CDS
AACATTCTAGTATCAATAAA+AGG	0.320542	7:+84201456	MsaT039059.1:CDS
AACTCAACTTCACATAATAG+GGG	0.625553	7:+84198182	MsaT039059.1:CDS
AAGCATGCCTTGCGGATTGC+TGG	0.343069	7:-84202053	None:intergenic
AAGGCTTCCGTGTGGCAAGA+AGG	0.553587	7:-84199050	None:intergenic
AAGTACAGGATGCTTGGAGA+GGG	0.558592	7:+84202186	MsaT039059.1:CDS
AAGTGTGATATATATGACTT+TGG	0.524536	7:+84201644	MsaT039059.1:CDS
AAGTTTGAAAGTCCTCGCAT+TGG	0.595247	7:+84198275	MsaT039059.1:CDS
AATGCGAGGACTTTCAAACT+TGG	0.539104	7:-84198273	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	84197164	84202274	84197164	ID=MsaG039059
Chr7	mRNA	84197164	84202274	84197164	ID=MsaT039059.1;Parent=MsaG039059
Chr7	exon	84197164	84197170	84197164	ID=MsaT039059.1.exon1;Parent=MsaT039059.1
Chr7	CDS	84197164	84197170	84197164	ID=cds.MsaT039059.1;Parent=MsaT039059.1
Chr7	exon	84198031	84198464	84198031	ID=MsaT039059.1.exon2;Parent=MsaT039059.1
Chr7	CDS	84198031	84198464	84198031	ID=cds.MsaT039059.1;Parent=MsaT039059.1
Chr7	exon	84198678	84199296	84198678	ID=MsaT039059.1.exon3;Parent=MsaT039059.1
Chr7	CDS	84198678	84199296	84198678	ID=cds.MsaT039059.1;Parent=MsaT039059.1
Chr7	exon	84199402	84199535	84199402	ID=MsaT039059.1.exon4;Parent=MsaT039059.1
Chr7	CDS	84199402	84199535	84199402	ID=cds.MsaT039059.1;Parent=MsaT039059.1
Chr7	exon	84199999	84200239	84199999	ID=MsaT039059.1.exon5;Parent=MsaT039059.1
Chr7	CDS	84199999	84200239	84199999	ID=cds.MsaT039059.1;Parent=MsaT039059.1
Chr7	exon	84201126	84201328	84201126	ID=MsaT039059.1.exon6;Parent=MsaT039059.1
Chr7	CDS	84201126	84201328	84201126	ID=cds.MsaT039059.1;Parent=MsaT039059.1
Chr7	exon	84201425	84201477	84201425	ID=MsaT039059.1.exon7;Parent=MsaT039059.1
Chr7	CDS	84201425	84201477	84201425	ID=cds.MsaT039059.1;Parent=MsaT039059.1
Chr7	exon	84201628	84201739	84201628	ID=MsaT039059.1.exon8;Parent=MsaT039059.1
Chr7	CDS	84201628	84201739	84201628	ID=cds.MsaT039059.1;Parent=MsaT039059.1
Chr7	exon	84202002	84202274	84202002	ID=MsaT039059.1.exon9;Parent=MsaT039059.1
Chr7	CDS	84202002	84202274	84202002	ID=cds.MsaT039059.1;Parent=MsaT039059.1

Gene Sequence

>MsaT039059.1

ATGAAAGAACAGCTTCAATCCTCACACTCTCAAACCCTTTTAAGAATTCAACAGCTATTGAACTTTCCTTCAGCTTTAAGCAATTGGAATAACTCCACAGATTTTTGCAACACAGACTCAAACTCTTCACTCACTATAGTATGCTATGAAGACACAATAACTCAACTTCACATAATAGGGGAAGGAAAAACTCCACCTCTCCCTAAAAATTTCTCAATTGATTCCTTTGTCACAACACTAGTAAAGCTTCCAAGTTTGAAAGTCCTCGCATTGGTTTCTCTTGGTATATGGGGTCCATTACCAGGTAAAATTGCACGCCTTTCGTCGTTGGAAATCGTTAACATGAGTTCGAATCATCTCTACGGTTCAATCCCTATGGAGCTTTCATCACTCTCAAATCTTCAGACACTCATTCTTGACAGCAACATGTTTTCTGGTCAGTTTCCTAAGCTTGGTAACAAGTTGGTTACTATAGTGCTAAGAAATAACATGTTCAGGTCAGGTATTCCTGCTGATGTGAGCTCATATCATCAGCTCGAGCGATTTGATATCTCATCAAATACATTTGTAGGGCCATTCCAACCAGCATTGTTGTCACTTCCTTCTATTGCTTACCTCAACATTTCTCGGAACAAATTAACCGGAATGCTCTTTGAGAATCTGTCTTGTAATTCTGAGCTTGAAGTTGTTGATTTATCATCAAATCTTTTGACTGGGAGCTTACCTAAATGTTTAGTTTCAAATTCTAGTGATAGAACTGTTTTGTATGCTAGAAATTGTCTCGAGACGACGAATCAAAATCAGCAGCCGCCGCCTTCTTGCCACACGGAAGCCTTAGCTGTGGGAATATTACCTGATAGAAAGAAGAAAAAACAAGTATCAAAGGTAGTTCTTACCCTTGGTATAGTAGGTGGAACTCTTGGAGGAGTAGCACTTGTTTTGCTGATTTTGTTTATTGTTAGAAGAGGAAATGCTAGAAGCAAAATGAAGAATCCTCCCACAAGATTAATATCGGAGAATGCAGCTTCTGGATACACCTCTAAGTTGCTTTCTGATGCAAGATATATATCTCAAACGAAGAAGTTTGGAGCACTTGGCCTGCCAACCTATAGGAGTTTTTCATTGGAAGAGATTGAGGCAGCTACAAACAACTTTGACACCGCTTCTTTAATGGGTGAAGATTCTTATGGAGAGATGTACAGAGGTCAGTTGAAGAATGGCTCAATTGTTGTTATTAGATGTATCAAAATGAAAAAAAGATACAGCACTCAAAATTTCATGCACCACATGGAGCTTATATCGAAACTTAGGCATCGTCATTTAGTCAGCGCTCTTGGACACTGCTTCGAATGTTCTTTAGAAGATTCAAGTGTCAGCAAAATATTTCTTGTCTTTGAATATGTACCAAATGGTACACTGAGGAGCTGGACATCTGATGGCCACACTGGAAAATCTCTGAATTGGACCCAACGCATTGGAGCTGCAATTGGAGTAGCAAAGGGAATCCAATTTTTGCATACAGGAATTGTCCCTGGTGTATATTCCAACAATATCAAAATAGAAGATATTTATTTGGATCACAATCTTGTTGCAAAAATTAGCAGTTATAATTTACCTCTGTTATCTAACATAGGAAAGGCTCGACGTGGAAGTTCTTCTGATGGATCCAAACATTCTAGTATCAATAAAAGTGGAAAGCATGAAGATAAGTGTGATATATATGACTTTGGAGTAATACTACTGGAAATCATTCTAGGAAGGACAATAAAGACCACAAATGATGCAGAAGCTTTTAAGGATCTGTTGCAAACAAGCTTAGGAGCTGATGAGGACGCTCGGAGGAGCATTATTGATCCAGCAATCCGCAAGGCATGCTTGGAACAATCACTGAAGACAATGACGGAGATATGTGTGAGGTGTATGATTAAAGAACCTGCAGAAAGGCCATCCATAGAGGATGTTTTGTGGAATTTGCAGTTTGCTGCTCAAGTACAGGATGCTTGGAGAGGGGATTCTCAAAGTAGTGAGGGGTCACCAGGTTCTCCTTTAGGGCCTCAAAGAACAGCCTTCCATTAA

Protein sequence

>MsaT039059.1

MKEQLQSSHSQTLLRIQQLLNFPSALSNWNNSTDFCNTDSNSSLTIVCYEDTITQLHIIGEGKTPPLPKNFSIDSFVTTLVKLPSLKVLALVSLGIWGPLPGKIARLSSLEIVNMSSNHLYGSIPMELSSLSNLQTLILDSNMFSGQFPKLGNKLVTIVLRNNMFRSGIPADVSSYHQLERFDISSNTFVGPFQPALLSLPSIAYLNISRNKLTGMLFENLSCNSELEVVDLSSNLLTGSLPKCLVSNSSDRTVLYARNCLETTNQNQQPPPSCHTEALAVGILPDRKKKKQVSKVVLTLGIVGGTLGGVALVLLILFIVRRGNARSKMKNPPTRLISENAASGYTSKLLSDARYISQTKKFGALGLPTYRSFSLEEIEAATNNFDTASLMGEDSYGEMYRGQLKNGSIVVIRCIKMKKRYSTQNFMHHMELISKLRHRHLVSALGHCFECSLEDSSVSKIFLVFEYVPNGTLRSWTSDGHTGKSLNWTQRIGAAIGVAKGIQFLHTGIVPGVYSNNIKIEDIYLDHNLVAKISSYNLPLLSNIGKARRGSSSDGSKHSSINKSGKHEDKCDIYDFGVILLEIILGRTIKTTNDAEAFKDLLQTSLGADEDARRSIIDPAIRKACLEQSLKTMTEICVRCMIKEPAERPSIEDVLWNLQFAAQVQDAWRGDSQSSEGSPGSPLGPQRTAFH*