Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039089 | XP_003624725.3 | 96.479 | 426 | 13 | 1 | 1 | 426 | 1 | 424 | 0.0 | 853 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039089 | sp|Q93ZL5|CDF2_ARATH | 37.366 | 372 | 175 | 15 | 40 | 393 | 77 | 408 | 4.40e-52 | 184 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039089 | tr|A0A396H9C4|A0A396H9C4_MEDTR | 96.479 | 426 | 13 | 1 | 1 | 426 | 1 | 424 | 0.0 | 853 |
Gene ID | Type | Classification |
---|---|---|
MsaG039089 | TF | C2C2-Dof |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039089 | MtrunA17_Chr7g0254161 | 96.479 | 426 | 13 | 1 | 1 | 426 | 1 | 424 | 0.0 | 853 |
MsaG039089 | MtrunA17_Chr6g0460731 | 50.267 | 374 | 139 | 9 | 8 | 350 | 10 | 367 | 6.60e-106 | 318 |
MsaG039089 | MtrunA17_Chr6g0460721 | 47.230 | 343 | 142 | 9 | 8 | 335 | 10 | 328 | 4.84e-93 | 283 |
MsaG039089 | MtrunA17_Chr6g0453321 | 34.747 | 495 | 222 | 17 | 8 | 425 | 5 | 475 | 4.36e-64 | 214 |
MsaG039089 | MtrunA17_Chr4g0042481 | 32.041 | 490 | 229 | 16 | 8 | 424 | 5 | 463 | 1.32e-54 | 188 |
MsaG039089 | MtrunA17_Chr7g0217581 | 36.036 | 444 | 203 | 15 | 38 | 425 | 164 | 582 | 1.67e-54 | 190 |
MsaG039089 | MtrunA17_Chr8g0355261 | 32.558 | 473 | 227 | 14 | 5 | 426 | 8 | 439 | 7.02e-54 | 185 |
MsaG039089 | MtrunA17_Chr3g0092111 | 34.078 | 358 | 188 | 8 | 83 | 421 | 116 | 444 | 1.69e-49 | 174 |
MsaG039089 | MtrunA17_Chr2g0283811 | 56.000 | 100 | 37 | 1 | 97 | 196 | 41 | 133 | 3.96e-32 | 119 |
MsaG039089 | MtrunA17_Chr5g0417571 | 65.116 | 86 | 24 | 1 | 86 | 165 | 121 | 206 | 1.17e-31 | 123 |
MsaG039089 | MtrunA17_Chr5g0417551 | 31.594 | 345 | 127 | 15 | 97 | 426 | 121 | 371 | 1.97e-31 | 123 |
MsaG039089 | MtrunA17_Chr5g0417561 | 30.117 | 342 | 136 | 11 | 97 | 426 | 113 | 363 | 8.02e-31 | 121 |
MsaG039089 | MtrunA17_Chr5g0417601 | 69.014 | 71 | 22 | 0 | 86 | 156 | 123 | 193 | 3.02e-28 | 114 |
MsaG039089 | MtrunA17_Chr8g0367161 | 51.807 | 83 | 39 | 1 | 77 | 158 | 5 | 87 | 7.48e-25 | 104 |
MsaG039089 | MtrunA17_Chr3g0127201 | 55.556 | 81 | 30 | 1 | 77 | 157 | 7 | 81 | 8.18e-25 | 103 |
MsaG039089 | MtrunA17_Chr8g0346551 | 61.905 | 63 | 24 | 0 | 98 | 160 | 19 | 81 | 9.94e-25 | 102 |
MsaG039089 | MtrunA17_Chr8g0374251 | 57.534 | 73 | 31 | 0 | 103 | 175 | 68 | 140 | 1.83e-24 | 103 |
MsaG039089 | MtrunA17_Chr4g0010151 | 65.517 | 58 | 20 | 0 | 99 | 156 | 78 | 135 | 5.60e-24 | 102 |
MsaG039089 | MtrunA17_Chr8g0374111 | 38.462 | 130 | 55 | 3 | 58 | 187 | 3 | 107 | 6.15e-24 | 99.4 |
MsaG039089 | MtrunA17_Chr2g0308011 | 73.469 | 49 | 13 | 0 | 103 | 151 | 37 | 85 | 6.31e-24 | 99.0 |
MsaG039089 | MtrunA17_Chr2g0326001 | 66.102 | 59 | 20 | 0 | 98 | 156 | 35 | 93 | 1.23e-23 | 100 |
MsaG039089 | MtrunA17_Chr2g0328021 | 56.000 | 75 | 33 | 0 | 82 | 156 | 41 | 115 | 1.60e-23 | 99.8 |
MsaG039089 | MtrunA17_Chr4g0031411 | 37.903 | 124 | 74 | 2 | 90 | 211 | 60 | 182 | 2.87e-23 | 99.8 |
MsaG039089 | MtrunA17_Chr4g0047001 | 70.909 | 55 | 16 | 0 | 104 | 158 | 56 | 110 | 3.57e-23 | 100 |
MsaG039089 | MtrunA17_Chr8g0341671 | 69.231 | 52 | 16 | 0 | 103 | 154 | 20 | 71 | 4.58e-23 | 96.7 |
MsaG039089 | MtrunA17_Chr4g0061761 | 67.925 | 53 | 17 | 0 | 101 | 153 | 38 | 90 | 6.81e-23 | 98.6 |
MsaG039089 | MtrunA17_Chr1g0188851 | 51.899 | 79 | 33 | 1 | 82 | 155 | 17 | 95 | 2.02e-22 | 96.7 |
MsaG039089 | MtrunA17_Chr4g0030051 | 62.121 | 66 | 24 | 1 | 91 | 155 | 28 | 93 | 2.05e-22 | 96.7 |
MsaG039089 | MtrunA17_Chr2g0282441 | 59.375 | 64 | 26 | 0 | 91 | 154 | 13 | 76 | 2.67e-22 | 97.1 |
MsaG039089 | MtrunA17_Chr7g0237921 | 38.760 | 129 | 66 | 2 | 91 | 217 | 62 | 179 | 2.76e-22 | 97.4 |
MsaG039089 | MtrunA17_Chr7g0223311 | 69.091 | 55 | 16 | 1 | 104 | 157 | 78 | 132 | 1.91e-21 | 95.1 |
MsaG039089 | MtrunA17_Chr5g0411951 | 65.455 | 55 | 19 | 0 | 99 | 153 | 39 | 93 | 2.02e-21 | 94.7 |
MsaG039089 | MtrunA17_Chr2g0282051 | 67.857 | 56 | 17 | 1 | 103 | 158 | 46 | 100 | 2.36e-21 | 93.2 |
MsaG039089 | MtrunA17_Chr3g0126201 | 67.308 | 52 | 17 | 0 | 105 | 156 | 53 | 104 | 3.98e-21 | 93.6 |
MsaG039089 | MtrunA17_Chr2g0282511 | 69.388 | 49 | 15 | 0 | 103 | 151 | 45 | 93 | 5.88e-21 | 92.8 |
MsaG039089 | MtrunA17_Chr1g0177251 | 67.308 | 52 | 17 | 0 | 105 | 156 | 14 | 65 | 7.18e-21 | 92.0 |
MsaG039089 | MtrunA17_Chr4g0047761 | 66.071 | 56 | 18 | 1 | 103 | 158 | 72 | 126 | 7.80e-21 | 92.8 |
MsaG039089 | MtrunA17_Chr3g0117601 | 58.065 | 62 | 25 | 1 | 93 | 153 | 50 | 111 | 2.30e-20 | 91.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG039089 | AT5G39660.3 | 37.366 | 372 | 175 | 15 | 40 | 393 | 77 | 408 | 4.47e-53 | 184 |
MsaG039089 | AT5G39660.1 | 37.366 | 372 | 175 | 15 | 40 | 393 | 77 | 408 | 4.47e-53 | 184 |
MsaG039089 | AT5G39660.2 | 37.366 | 372 | 175 | 15 | 40 | 393 | 77 | 408 | 4.47e-53 | 184 |
MsaG039089 | AT3G47500.1 | 31.546 | 485 | 234 | 15 | 3 | 426 | 1 | 448 | 5.61e-50 | 176 |
MsaG039089 | AT5G62430.1 | 42.424 | 198 | 65 | 5 | 82 | 277 | 33 | 183 | 1.34e-37 | 139 |
MsaG039089 | AT1G26790.1 | 45.143 | 175 | 88 | 5 | 1 | 169 | 5 | 177 | 1.97e-34 | 132 |
MsaG039089 | AT1G29160.1 | 81.667 | 60 | 11 | 0 | 97 | 156 | 56 | 115 | 8.37e-33 | 122 |
MsaG039089 | AT2G34140.1 | 64.198 | 81 | 29 | 0 | 97 | 177 | 52 | 132 | 1.44e-32 | 121 |
MsaG039089 | AT1G69570.1 | 65.823 | 79 | 27 | 0 | 91 | 169 | 120 | 198 | 3.76e-32 | 126 |
MsaG039089 | AT3G55370.1 | 57.143 | 70 | 30 | 0 | 99 | 168 | 72 | 141 | 9.36e-25 | 104 |
MsaG039089 | AT3G55370.2 | 57.143 | 70 | 30 | 0 | 99 | 168 | 72 | 141 | 1.16e-24 | 104 |
MsaG039089 | AT3G55370.3 | 57.143 | 70 | 30 | 0 | 99 | 168 | 117 | 186 | 1.88e-24 | 104 |
MsaG039089 | AT5G60850.1 | 54.762 | 84 | 32 | 2 | 103 | 186 | 51 | 128 | 2.87e-24 | 102 |
MsaG039089 | AT5G60200.1 | 56.338 | 71 | 31 | 0 | 99 | 169 | 51 | 121 | 4.47e-24 | 100 |
MsaG039089 | AT1G51700.1 | 69.231 | 52 | 16 | 0 | 103 | 154 | 33 | 84 | 4.79e-24 | 99.4 |
MsaG039089 | AT4G24060.1 | 44.444 | 117 | 60 | 2 | 100 | 214 | 50 | 163 | 1.41e-23 | 101 |
MsaG039089 | AT3G61850.2 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 1.52e-23 | 100 |
MsaG039089 | AT3G61850.3 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 1.52e-23 | 100 |
MsaG039089 | AT3G61850.1 | 64.407 | 59 | 21 | 0 | 98 | 156 | 69 | 127 | 2.11e-23 | 100 |
MsaG039089 | AT3G61850.5 | 64.407 | 59 | 21 | 0 | 98 | 156 | 57 | 115 | 2.47e-23 | 100 |
MsaG039089 | AT2G28810.2 | 66.071 | 56 | 19 | 0 | 99 | 154 | 73 | 128 | 2.77e-23 | 100 |
MsaG039089 | AT3G61850.4 | 64.407 | 59 | 21 | 0 | 98 | 156 | 69 | 127 | 3.32e-23 | 100 |
MsaG039089 | AT3G21270.1 | 69.811 | 53 | 16 | 0 | 103 | 155 | 29 | 81 | 3.54e-23 | 97.1 |
MsaG039089 | AT2G28810.1 | 66.071 | 56 | 19 | 0 | 99 | 154 | 90 | 145 | 4.86e-23 | 99.8 |
MsaG039089 | AT3G45610.1 | 52.857 | 70 | 33 | 0 | 99 | 168 | 36 | 105 | 5.79e-23 | 97.4 |
MsaG039089 | AT2G37590.1 | 63.793 | 58 | 21 | 0 | 99 | 156 | 85 | 142 | 6.09e-23 | 99.4 |
MsaG039089 | AT1G07640.1 | 69.091 | 55 | 16 | 1 | 103 | 156 | 21 | 75 | 1.20e-22 | 97.4 |
MsaG039089 | AT1G07640.2 | 69.091 | 55 | 16 | 1 | 103 | 156 | 77 | 131 | 1.68e-22 | 98.2 |
MsaG039089 | AT4G00940.1 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.12e-22 | 97.1 |
MsaG039089 | AT4G00940.3 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.12e-22 | 97.1 |
MsaG039089 | AT4G00940.2 | 56.944 | 72 | 27 | 1 | 91 | 158 | 52 | 123 | 2.12e-22 | 97.1 |
MsaG039089 | AT1G28310.1 | 68.519 | 54 | 17 | 0 | 103 | 156 | 27 | 80 | 2.12e-22 | 97.4 |
MsaG039089 | AT1G07640.3 | 69.091 | 55 | 16 | 1 | 103 | 156 | 85 | 139 | 2.26e-22 | 97.8 |
MsaG039089 | AT5G65590.1 | 70.370 | 54 | 16 | 0 | 103 | 156 | 41 | 94 | 2.46e-22 | 97.4 |
MsaG039089 | AT1G28310.2 | 68.519 | 54 | 17 | 0 | 103 | 156 | 51 | 104 | 3.14e-22 | 97.4 |
MsaG039089 | AT5G02460.1 | 44.898 | 98 | 53 | 1 | 99 | 195 | 91 | 188 | 4.45e-22 | 97.8 |
MsaG039089 | AT1G64620.1 | 65.385 | 52 | 18 | 0 | 100 | 151 | 46 | 97 | 5.90e-22 | 97.1 |
MsaG039089 | AT3G50410.1 | 70.588 | 51 | 15 | 0 | 105 | 155 | 32 | 82 | 5.91e-22 | 94.7 |
MsaG039089 | AT4G38000.1 | 66.071 | 56 | 18 | 1 | 102 | 156 | 40 | 95 | 8.18e-22 | 94.4 |
MsaG039089 | AT5G66940.1 | 50.000 | 80 | 33 | 1 | 90 | 169 | 26 | 98 | 8.28e-22 | 94.0 |
MsaG039089 | AT2G28510.1 | 66.071 | 56 | 19 | 0 | 105 | 160 | 50 | 105 | 1.64e-21 | 94.4 |
MsaG039089 | AT4G21050.1 | 40.800 | 125 | 59 | 3 | 76 | 198 | 4 | 115 | 2.91e-21 | 92.0 |
MsaG039089 | AT2G46590.1 | 62.264 | 53 | 20 | 0 | 98 | 150 | 63 | 115 | 1.18e-20 | 93.2 |
MsaG039089 | AT3G52440.1 | 65.385 | 52 | 18 | 0 | 105 | 156 | 27 | 78 | 1.24e-20 | 90.9 |
MsaG039089 | AT2G46590.2 | 62.264 | 53 | 20 | 0 | 98 | 150 | 75 | 127 | 1.48e-20 | 93.2 |
MsaG039089 | AT3G52440.2 | 65.385 | 52 | 18 | 0 | 105 | 156 | 46 | 97 | 1.53e-20 | 91.3 |
MsaG039089 | AT1G21340.1 | 66.000 | 50 | 17 | 0 | 105 | 154 | 40 | 89 | 3.34e-20 | 90.1 |
MsaG039089 | AT1G47655.1 | 70.213 | 47 | 14 | 0 | 105 | 151 | 31 | 77 | 3.70e-20 | 88.6 |
MsaG039089 | AT5G62940.1 | 57.812 | 64 | 26 | 1 | 91 | 153 | 60 | 123 | 8.78e-20 | 90.9 |
MsaG039089 | AT4G21040.1 | 63.462 | 52 | 19 | 0 | 105 | 156 | 27 | 78 | 6.48e-18 | 82.8 |
MsaG039089 | AT4G21080.1 | 57.895 | 57 | 24 | 0 | 105 | 161 | 27 | 83 | 2.60e-17 | 81.6 |
MsaG039089 | AT4G21030.1 | 59.091 | 44 | 18 | 0 | 105 | 148 | 23 | 66 | 2.81e-11 | 62.8 |
Find 118 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTCTTCATTAGGCTTCT+TGG | 0.163517 | 7:-84545928 | None:intergenic |
TTTGGGTGGCTCTCAGATTT+TGG | 0.205376 | 7:+84545962 | MsaT039089.1:CDS |
GATCATGGTATTATGCTATT+TGG | 0.221788 | 7:+84543737 | MsaT039089.1:CDS |
AACGAGACTGTATTGAAATT+TGG | 0.235896 | 7:+84545330 | MsaT039089.1:CDS |
TGTCCAATTCCGGCCAATTC+TGG | 0.261036 | 7:+84543782 | MsaT039089.1:CDS |
TACTTCATTTCCTTGATTGC+CGG | 0.302888 | 7:-84545490 | None:intergenic |
TATCTCTATTGTGCTTTCCT+AGG | 0.318213 | 7:-84545794 | None:intergenic |
AAATTTATTATATGCTTTCC+TGG | 0.318417 | 7:-84546022 | None:intergenic |
GTGGGCTTGGAATTTACTAT+TGG | 0.321756 | 7:-84544976 | None:intergenic |
GGTCCAGAATTGGCCGGAAT+TGG | 0.321957 | 7:-84543785 | None:intergenic |
CGTGTTATCTTCGGTGGGCT+TGG | 0.325634 | 7:-84544989 | None:intergenic |
GCTATTTGGTTGGAAGATTC+CGG | 0.345460 | 7:+84543751 | MsaT039089.1:CDS |
GATTCGCAAAGAGGGGTATC+AGG | 0.380348 | 7:-84545354 | None:intergenic |
AGAAGGAAAAGACGGTGTTT+TGG | 0.384688 | 7:+84545944 | MsaT039089.1:CDS |
ACACCTATGTTGGCAATTCC+AGG | 0.386307 | 7:+84545648 | MsaT039089.1:CDS |
CAGAACACAATGCATCAAAT+TGG | 0.395828 | 7:+84545514 | MsaT039089.1:CDS |
TTTATCTTGATCCGTATTAC+CGG | 0.399758 | 7:-84545016 | None:intergenic |
GGTAGTACCCATGGAGAAAC+AGG | 0.400241 | 7:-84545549 | None:intergenic |
TTGGAATAATGTTGCTTCAA+TGG | 0.402306 | 7:+84545584 | MsaT039089.1:CDS |
CACCAGCAGTCCAGTACCTT+TGG | 0.404005 | 7:-84545155 | None:intergenic |
TTATTCCAACCTGGATTCAT+TGG | 0.406197 | 7:-84545570 | None:intergenic |
AGACAATTCTTCTGATTCAA+TGG | 0.409932 | 7:+84544921 | MsaT039089.1:CDS |
TTGGCCGGAATTGGACATTC+CGG | 0.413804 | 7:-84543776 | None:intergenic |
TCGTGGTTACTATAATTTGC+CGG | 0.419212 | 7:-84545242 | None:intergenic |
ACAAGTAACAGTTGCTGCTC+AGG | 0.422483 | 7:+84545756 | MsaT039089.1:CDS |
ATCTCTATTGTGCTTTCCTA+GGG | 0.423915 | 7:-84545793 | None:intergenic |
GGACACTGAACAATCTTGTC+TGG | 0.427093 | 7:-84545051 | None:intergenic |
AACAGTTGCTGCTCAGGAAA+TGG | 0.428682 | 7:+84545762 | MsaT039089.1:CDS |
CTATTGTGCTTTCCTAGGGT+TGG | 0.437965 | 7:-84545789 | None:intergenic |
GCAAGAACTGCCAAAGGTAC+TGG | 0.438215 | 7:+84545145 | MsaT039089.1:CDS |
TAAAACAGACAAGTGTGTTC+CGG | 0.446244 | 7:+84545836 | MsaT039089.1:CDS |
CAGTCTCGAAAAGTCCTATC+CGG | 0.447133 | 7:+84545892 | MsaT039089.1:CDS |
ATGTACCATGGGTCCAGAAT+TGG | 0.447645 | 7:-84543795 | None:intergenic |
ACCGGTCTCCGTGTTATCTT+CGG | 0.448248 | 7:-84544998 | None:intergenic |
TTCCGATAGGTGCTGGGAGG+CGG | 0.450898 | 7:+84545193 | MsaT039089.1:CDS |
AGAAATGTTCCGATAGGTGC+TGG | 0.459160 | 7:+84545186 | MsaT039089.1:CDS |
ATGGTATTATGCTATTTGGT+TGG | 0.461686 | 7:+84543741 | MsaT039089.1:CDS |
TGGTTGGAAGATTCCGGTGC+CGG | 0.462466 | 7:+84543757 | MsaT039089.1:CDS |
TACCCCTCTTTGCGAATCAA+TGG | 0.468240 | 7:+84545359 | MsaT039089.1:CDS |
ACAAGAGTCTATACCAGAAA+AGG | 0.468668 | 7:+84544951 | MsaT039089.1:CDS |
TAACACGGAGACCGGTAATA+CGG | 0.475853 | 7:+84545005 | MsaT039089.1:CDS |
GGTGCCGGAATGTCCAATTC+CGG | 0.477329 | 7:+84543772 | MsaT039089.1:CDS |
GTGTTATCCTGTTTCTCCAT+GGG | 0.479488 | 7:+84545542 | MsaT039089.1:CDS |
AGGATACTTGCAGCAGTACA+AGG | 0.490268 | 7:+84544854 | MsaT039089.1:intron |
GTAACAAACACCGGCAATCA+AGG | 0.493046 | 7:+84545480 | MsaT039089.1:CDS |
AGTGTTATCCTGTTTCTCCA+TGG | 0.495037 | 7:+84545541 | MsaT039089.1:CDS |
GGAATTGGACATTCCGGCAC+CGG | 0.499395 | 7:-84543770 | None:intergenic |
ACCAAGAAGCCTAATGAAGA+AGG | 0.504636 | 7:+84545927 | MsaT039089.1:CDS |
GTCTCCGTGTTATCTTCGGT+GGG | 0.507024 | 7:-84544994 | None:intergenic |
AGAAGAATTGTCTTGTTGCT+CGG | 0.510082 | 7:-84544911 | None:intergenic |
AGCACCTAGCCTCTCAATAC+CGG | 0.512664 | 7:+84545223 | MsaT039089.1:CDS |
CGTGGTTGGAACTCCATTCG+TGG | 0.513560 | 7:-84545259 | None:intergenic |
TTCTCATGCTCATACAATCC+AGG | 0.520401 | 7:+84546004 | MsaT039089.1:CDS |
CAATACAGTCTCGTTATCCA+TGG | 0.528405 | 7:-84545322 | None:intergenic |
TTCCGCCTCCCAGCACCTAT+CGG | 0.529039 | 7:-84545195 | None:intergenic |
TGCCAAAGGTACTGGACTGC+TGG | 0.529099 | 7:+84545153 | MsaT039089.1:CDS |
GTAGTTTCTAGCCTCGTGGT+TGG | 0.531644 | 7:-84545273 | None:intergenic |
TATAATTTGCCGGTATTGAG+AGG | 0.538214 | 7:-84545232 | None:intergenic |
ACCGAAGATAACACGGAGAC+CGG | 0.539518 | 7:+84544997 | MsaT039089.1:CDS |
GGAATTGCCAACATAGGTGT+TGG | 0.540068 | 7:-84545645 | None:intergenic |
GTGTCCGCGATGCAACAGTT+GGG | 0.540349 | 7:+84545068 | MsaT039089.1:CDS |
GTTGTTGAAATAACAAAACT+TGG | 0.540457 | 7:-84545094 | None:intergenic |
TCTCAGACTCAGAAGGATCA+TGG | 0.542010 | 7:+84543722 | MsaT039089.1:CDS |
ATTCCATTGATTCGCAAAGA+GGG | 0.549386 | 7:-84545362 | None:intergenic |
CGATCACCACCACACATCCA+TGG | 0.550071 | 7:+84545305 | MsaT039089.1:CDS |
GGATTCATTGGTAGTACCCA+TGG | 0.554215 | 7:-84545558 | None:intergenic |
GTAGCTAATGTAGCCCGGAT+AGG | 0.554980 | 7:-84545906 | None:intergenic |
GGTCTCCGTGTTATCTTCGG+TGG | 0.555105 | 7:-84544995 | None:intergenic |
ATGAGAAATAGCTCCTGAGC+TGG | 0.556629 | 7:-84545988 | None:intergenic |
CATGGATGTGTGGTGGTGAT+CGG | 0.559985 | 7:-84545304 | None:intergenic |
GGAAATGGCTCACCAACCCT+AGG | 0.561749 | 7:+84545777 | MsaT039089.1:CDS |
CAGTTCTTGCAGAAATGTCG+AGG | 0.563164 | 7:-84545132 | None:intergenic |
CGACTTCGGCATCCATGCAA+TGG | 0.568776 | 7:+84545619 | MsaT039089.1:CDS |
GATTCCATTGATTCGCAAAG+AGG | 0.571846 | 7:-84545363 | None:intergenic |
TCTTGGTAGCTAATGTAGCC+CGG | 0.573000 | 7:-84545911 | None:intergenic |
AACTTGTAGCAGCATCACAT+TGG | 0.575411 | 7:+84545697 | MsaT039089.1:CDS |
AGAACTGTTTGAATTTGCAT+CGG | 0.575677 | 7:-84545418 | None:intergenic |
AGTGTCCGCGATGCAACAGT+TGG | 0.576096 | 7:+84545067 | MsaT039089.1:CDS |
GGCAGCAGTTCATCCGACTT+CGG | 0.576744 | 7:+84545605 | MsaT039089.1:CDS |
CAAATTATAGTAACCACGAA+TGG | 0.580675 | 7:+84545246 | MsaT039089.1:CDS |
TCCGGCCAATTCTGGACCCA+TGG | 0.581876 | 7:+84543790 | MsaT039089.1:CDS |
GCAGCAACTGTTACTTGTAG+AGG | 0.584099 | 7:-84545751 | None:intergenic |
TGGGTACTACCAATGAATCC+AGG | 0.586175 | 7:+84545561 | MsaT039089.1:CDS |
CATTGCATGGATGCCGAAGT+CGG | 0.595329 | 7:-84545618 | None:intergenic |
AGTCTCGAAAAGTCCTATCC+GGG | 0.597281 | 7:+84545893 | MsaT039089.1:CDS |
ATTCCTGGAATTGCCAACAT+AGG | 0.597632 | 7:-84545651 | None:intergenic |
AGAGAGGAACCGTCCTTGTG+TGG | 0.598119 | 7:+84545450 | MsaT039089.1:CDS |
TACTACCAATGAATCCAGGT+TGG | 0.601762 | 7:+84545565 | MsaT039089.1:CDS |
CAGTTCTGTGCAACATAGAG+AGG | 0.603480 | 7:+84545434 | MsaT039089.1:CDS |
CCTAATGAAGAAGGAAAAGA+CGG | 0.611817 | 7:+84545936 | MsaT039089.1:CDS |
GAAATGTTCCGATAGGTGCT+GGG | 0.612734 | 7:+84545187 | MsaT039089.1:CDS |
GGCGGCGAGAGGCAAAGTGA+TGG | 0.613227 | 7:-84545726 | None:intergenic |
TTCCATTGATTCGCAAAGAG+GGG | 0.615780 | 7:-84545361 | None:intergenic |
GATGCTGCTACAAGTTGTAA+AGG | 0.617256 | 7:-84545690 | None:intergenic |
CAGTACAAGGAAAACAGAAG+TGG | 0.617838 | 7:+84544867 | MsaT039089.1:CDS |
GAAGCAACATTATTCCAACC+TGG | 0.621410 | 7:-84545579 | None:intergenic |
GAACATGTCTCAGACTCAGA+AGG | 0.626037 | 7:+84543715 | MsaT039089.1:CDS |
CAAGCCCACCGAAGATAACA+CGG | 0.626181 | 7:+84544990 | MsaT039089.1:CDS |
TTGTAGAGGAAGGCGGCGAG+AGG | 0.626239 | 7:-84545737 | None:intergenic |
TTTGCCGGTATTGAGAGGCT+AGG | 0.626885 | 7:-84545227 | None:intergenic |
ATGGTGTCCAACACCTATGT+TGG | 0.630522 | 7:+84545638 | MsaT039089.1:CDS |
CAACTGTTACTTGTAGAGGA+AGG | 0.635921 | 7:-84545747 | None:intergenic |
GTTTGTAGTTTCTAGCCTCG+TGG | 0.637790 | 7:-84545277 | None:intergenic |
AGGTGTTGGACACCATTGCA+TGG | 0.641634 | 7:-84545631 | None:intergenic |
CAAAGGTACTGGACTGCTGG+TGG | 0.641821 | 7:+84545156 | MsaT039089.1:CDS |
ACGATGAGAAATGTTCCGAT+AGG | 0.643759 | 7:+84545180 | MsaT039089.1:CDS |
GGATCTTCTGTAACAAACAC+CGG | 0.647048 | 7:+84545471 | MsaT039089.1:CDS |
CGTTATCCATGGATGTGTGG+TGG | 0.660626 | 7:-84545311 | None:intergenic |
ACAGAAGATCCACACAAGGA+CGG | 0.669016 | 7:-84545459 | None:intergenic |
ACCATGGGTCCAGAATTGGC+CGG | 0.674302 | 7:-84543791 | None:intergenic |
GTAGCAGCATCACATTGGAG+TGG | 0.674545 | 7:+84545702 | MsaT039089.1:CDS |
CTGTTACTTGTAGAGGAAGG+CGG | 0.676133 | 7:-84545744 | None:intergenic |
ATTTCTGCAAGAACTGCCAA+AGG | 0.677880 | 7:+84545139 | MsaT039089.1:CDS |
TCTCGTTATCCATGGATGTG+TGG | 0.680622 | 7:-84545314 | None:intergenic |
CGAATGGAGTTCCAACCACG+AGG | 0.695228 | 7:+84545262 | MsaT039089.1:CDS |
GTGTCCCAACTGTTGCATCG+CGG | 0.715720 | 7:-84545072 | None:intergenic |
TGTTACAGAAGATCCACACA+AGG | 0.727736 | 7:-84545463 | None:intergenic |
ATGTTCCGATAGGTGCTGGG+AGG | 0.729596 | 7:+84545190 | MsaT039089.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 84543713 | 84546037 | 84543713 | ID=MsaG039089 |
Chr7 | mRNA | 84543713 | 84546037 | 84543713 | ID=MsaT039089.1;Parent=MsaG039089 |
Chr7 | exon | 84543713 | 84543811 | 84543713 | ID=MsaT039089.1.exon1;Parent=MsaT039089.1 |
Chr7 | CDS | 84543713 | 84543811 | 84543713 | ID=cds.MsaT039089.1;Parent=MsaT039089.1 |
Chr7 | exon | 84544856 | 84546037 | 84544856 | ID=MsaT039089.1.exon2;Parent=MsaT039089.1 |
Chr7 | CDS | 84544856 | 84546037 | 84544856 | ID=cds.MsaT039089.1;Parent=MsaT039089.1 |
Gene Sequence |
Protein sequence |