AlfalfaGEDB | MsaG039089

M. sativa ssp. caerulea / MsaG039089

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039089	XP_003624725.3	96.479	426	13	1	1	426	1	424	0.0	853

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039089	sp\|Q93ZL5\|CDF2_ARATH	37.366	372	175	15	40	393	77	408	4.40e-52	184

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039089	tr\|A0A396H9C4\|A0A396H9C4_MEDTR	96.479	426	13	1	1	426	1	424	0.0	853

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TFs/TRs:

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Gene ID	Type	Classification
MsaG039089	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039089	MtrunA17_Chr7g0254161	96.479	426	13	1	1	426	1	424	0.0	853
MsaG039089	MtrunA17_Chr6g0460731	50.267	374	139	9	8	350	10	367	6.60e-106	318
MsaG039089	MtrunA17_Chr6g0460721	47.230	343	142	9	8	335	10	328	4.84e-93	283
MsaG039089	MtrunA17_Chr6g0453321	34.747	495	222	17	8	425	5	475	4.36e-64	214
MsaG039089	MtrunA17_Chr4g0042481	32.041	490	229	16	8	424	5	463	1.32e-54	188
MsaG039089	MtrunA17_Chr7g0217581	36.036	444	203	15	38	425	164	582	1.67e-54	190
MsaG039089	MtrunA17_Chr8g0355261	32.558	473	227	14	5	426	8	439	7.02e-54	185
MsaG039089	MtrunA17_Chr3g0092111	34.078	358	188	8	83	421	116	444	1.69e-49	174
MsaG039089	MtrunA17_Chr2g0283811	56.000	100	37	1	97	196	41	133	3.96e-32	119
MsaG039089	MtrunA17_Chr5g0417571	65.116	86	24	1	86	165	121	206	1.17e-31	123

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG039089	AT5G39660.3	37.366	372	175	15	40	393	77	408	4.47e-53	184
MsaG039089	AT5G39660.1	37.366	372	175	15	40	393	77	408	4.47e-53	184
MsaG039089	AT5G39660.2	37.366	372	175	15	40	393	77	408	4.47e-53	184
MsaG039089	AT3G47500.1	31.546	485	234	15	3	426	1	448	5.61e-50	176
MsaG039089	AT5G62430.1	42.424	198	65	5	82	277	33	183	1.34e-37	139
MsaG039089	AT1G26790.1	45.143	175	88	5	1	169	5	177	1.97e-34	132
MsaG039089	AT1G29160.1	81.667	60	11	0	97	156	56	115	8.37e-33	122
MsaG039089	AT2G34140.1	64.198	81	29	0	97	177	52	132	1.44e-32	121
MsaG039089	AT1G69570.1	65.823	79	27	0	91	169	120	198	3.76e-32	126
MsaG039089	AT3G55370.1	57.143	70	30	0	99	168	72	141	9.36e-25	104

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Find 118 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTATTATATGCTTTCC+TGG	0.318417	7:-84546022	None:intergenic
AACAGTTGCTGCTCAGGAAA+TGG	0.428682	7:+84545762	MsaT039089.1:CDS
AACGAGACTGTATTGAAATT+TGG	0.235896	7:+84545330	MsaT039089.1:CDS
AACTTGTAGCAGCATCACAT+TGG	0.575411	7:+84545697	MsaT039089.1:CDS
ACAAGAGTCTATACCAGAAA+AGG	0.468668	7:+84544951	MsaT039089.1:CDS
ACAAGTAACAGTTGCTGCTC+AGG	0.422483	7:+84545756	MsaT039089.1:CDS
ACACCTATGTTGGCAATTCC+AGG	0.386307	7:+84545648	MsaT039089.1:CDS
ACAGAAGATCCACACAAGGA+CGG	0.669016	7:-84545459	None:intergenic
ACCAAGAAGCCTAATGAAGA+AGG	0.504636	7:+84545927	MsaT039089.1:CDS
ACCATGGGTCCAGAATTGGC+CGG	0.674302	7:-84543791	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	84543713	84546037	84543713	ID=MsaG039089
Chr7	mRNA	84543713	84546037	84543713	ID=MsaT039089.1;Parent=MsaG039089
Chr7	exon	84543713	84543811	84543713	ID=MsaT039089.1.exon1;Parent=MsaT039089.1
Chr7	CDS	84543713	84543811	84543713	ID=cds.MsaT039089.1;Parent=MsaT039089.1
Chr7	exon	84544856	84546037	84544856	ID=MsaT039089.1.exon2;Parent=MsaT039089.1
Chr7	CDS	84544856	84546037	84544856	ID=cds.MsaT039089.1;Parent=MsaT039089.1

Gene Sequence

>MsaT039089.1

ATGAACATGTCTCAGACTCAGAAGGATCATGGTATTATGCTATTTGGTTGGAAGATTCCGGTGCCGGAATGTCCAATTCCGGCCAATTCTGGACCCATGGATACTTGCAGCAGTACAAGGAAAACAGAAGTGGAAATACCTTGTGCAGAAAAAACCGAGCAACAAGACAATTCTTCTGATTCAATGGATAGTAAACAAGAGTCTATACCAGAAAAGGAGCCAATAGTAAATTCCAAGCCCACCGAAGATAACACGGAGACCGGTAATACGGATCAAGATAAACTCTTAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGATGCAACAGTTGGGACACCAAGTTTTGTTATTTCAACAACTATAACGTCAATCAACCTCGACATTTCTGCAAGAACTGCCAAAGGTACTGGACTGCTGGTGGAACGATGAGAAATGTTCCGATAGGTGCTGGGAGGCGGAAGAATAAGCACCTAGCCTCTCAATACCGGCAAATTATAGTAACCACGAATGGAGTTCCAACCACGAGGCTAGAAACTACAAACTCATCCGATCACCACCACACATCCATGGATAACGAGACTGTATTGAAATTTGGTCCTGATACCCCTCTTTGCGAATCAATGGAATCAATGCTTCATCTTAGAGACCAAAAAAGAAGTGCCGATGCAAATTCAAACAGTTCTGTGCAACATAGAGAGGAACCGTCCTTGTGTGGATCTTCTGTAACAAACACCGGCAATCAAGGAAATGAAGTATCAGAACACAATGCATCAAATTGGTTGCAGTGTTATCCTGTTTCTCCATGGGTACTACCAATGAATCCAGGTTGGAATAATGTTGCTTCAATGGCAGCAGTTCATCCGACTTCGGCATCCATGCAATGGTGTCCAACACCTATGTTGGCAATTCCAGGAATTCAGCCACAAAATATACCTTTACAACTTGTAGCAGCATCACATTGGAGTGGACCATCACTTTGCCTCTCGCCGCCTTCCTCTACAAGTAACAGTTGCTGCTCAGGAAATGGCTCACCAACCCTAGGAAAGCACAATAGAGATACAGTTTTCGCAGATGAAGATAAAACAGACAAGTGTGTTCCGGTTCGAAAAACAATTAGAACTGATGTCACAGATGCAGTCTCGAAAAGTCCTATCCGGGCTACATTAGCTACCAAGAAGCCTAATGAAGAAGGAAAAGACGGTGTTTTGGGTGGCTCTCAGATTTTGGAAGCCAGCTCAGGAGCTATTTCTCATGCTCATACAATCCAGGAAAGCATATAA

Protein sequence

>MsaT039089.1

MNMSQTQKDHGIMLFGWKIPVPECPIPANSGPMDTCSSTRKTEVEIPCAEKTEQQDNSSDSMDSKQESIPEKEPIVNSKPTEDNTETGNTDQDKLLKKPDKIVQCPRCNSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVTTNGVPTTRLETTNSSDHHHTSMDNETVLKFGPDTPLCESMESMLHLRDQKRSADANSNSSVQHREEPSLCGSSVTNTGNQGNEVSEHNASNWLQCYPVSPWVLPMNPGWNNVASMAAVHPTSASMQWCPTPMLAIPGIQPQNIPLQLVAASHWSGPSLCLSPPSSTSNSCCSGNGSPTLGKHNRDTVFADEDKTDKCVPVRKTIRTDVTDAVSKSPIRATLATKKPNEEGKDGVLGGSQILEASSGAISHAHTIQESI*